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Importing Java class into a python project

I've been trying to find a method to importing Java-ml into my python project. I have the jar file in the same path as my project.
I want to use it for kmeans clustering, since it allows me to change the distance metric. I am wondering though whether with the implementation that one of you suggest, whether I'll be able to pass a different java class as a parameter for the function?
I tried using:
import sys
sys.path.append(r"C:\Users\X\Desktop\X\javaml-0.1.7\javaml-0.1.7.jar")
import net.sf.javaml as jml
test = jml.clustering.Kmeans()
I considered using jython, however I am unsure of how it works, and it is unclear whether I could continue using idle and whether I would have to reprogram my project.
Lastly I considered using PyJNIus, however it is simply not working.

In short, you can't run Java code natively in a CPython interpreter.
Firstly, Python is just the name of the specification for the language. If you are using the Python supplied by your operating system (or downloaded from the official Python website), then you are using CPython. CPython does not have the ability to interpret Java code.
However, as you mentioned, there is an implementation of Python for the JVM called Jython. Jython is an implementation of Python that operates on the JVM and therefore can interact with Java modules. However, very few people work with Jython and therefore you will be a bit on your own about making everything work properly. You would not need to re-write your vanilla Python code (since Jython can interpret Python 2.x) but not all libraries (such as numpy) will be supported.
Finally, I think you need to better understand the K-Means algorithm, as the algorithm is implicitly defined in terms of the Euclidean distance. Using any other distance metric would no longer be considered K-Means and may affect the convergence of the algorithm. See here for more information.
Again, you can't run Java code natively in a CPython interpreter. Of course there are various third party libraries that will handle marshalling of data between Java and Python. However, I stand by my statement that for this particular use case you are likely better to use a native Python library (something like K-Medoid in Scikit-Learn). Attempting to call through to Java, with all the associated overhead, is overkill for this problem, in my opinion.

To "answer" your question directly, Jython will be your best bet if you simply want to import Java classes. Jython strives very hard to be as compatible with Python 2.x as possible and does a good job. So you won't have to spend too much time rewriting code. Just simply run it with Jython and see what happens, then modify what breaks.
Now for the Python answer :D. You may want to use scikit for a native implementation. It will certainly be faster than running anything in Jython.
Update
I think the Py4J module is what you're looking. It works by running a server in your Java code and the Python code will communicate with the Java server. The only good thing about "Py4J" is that it provides the boiler plate code for you. You can very easily setup your own client/server with no extra modules. However I still don't think it's a superior option compared to Pythons native modules.
References
How to import Java class w/ Jython
Scikit - K-Means

Running algorithms in compiled C/C++ code within a Java/PHP/Python framework?

Occasionally, I have come across programming techniques that involve creating application frameworks or websites in Java, PHP or Python, but when complex algorithms are needed, writing those out in C or C++ and running them as API-like function calls within your Java/PHP/Python code.
I have been googling and searching around the net for this, and unless I don't know the name of the practice, I can't seem to find anything on it.
To put simply, how can I:
Create functions or classes in C or C++
Compile them into a DLL/binary/some form
Run the functions from -
Java
PHP
Python
I suspect JSON/XML like output and input must be created between the Java/PHP/Python and the C/C++ function so the data can be easily bridged, but that is okay.
I'm just not sure how to approach this technique, but it seems like a very smart way to take advantage of the great features of Java, PHP, and Python while at the same time utilizing the very fast programming languages for large, complex tasks.
The other thought going through my head is if I am creating functions using only literals in Java/PHP/Python, will it go nearly as fast as C anyway?
The specific tasks I'm looking to work with C/C++ on is massive loops, pinging a database, and analyzing maps. No work has started yet, its all theory now.

You can easily extend a python script with custom C++ code using Boost.Python, see this website for more details: http://www.boost.org/doc/libs/1_50_0/libs/python/doc/
This is how you can use it:
char const* greet()
{
return "hello, world";
}
#include <boost/python.hpp>
BOOST_PYTHON_MODULE(hello_ext)
{
using namespace boost::python;
def("greet", greet);
}
You need to compile this into a shared library. You will get a .dll on windows and a .so on Linux. The library will include the necessary code to make it available to python. Example using it:
>>> import hello_ext
>>> print hello_ext.greet()
hello, world
Here are some more examples: http://www.boost.org/doc/libs/1_50_0/libs/python/doc/tutorial/doc/html/index.html
When using Boost.Python remember to link your shared object to python if you are not using weak dynamic linking. There are similar things for PHP and Java.
As for other languages, I never used a custom shared library with Java but did so with PHP and it was a pain using the native Api. I found using swig way more pleasant.

Altough I agree with the comments (you might do it for fun, for business it's a bad idea) you might be interested in this similar question. The mentioned SWIG framework supports
all the languages you mentioned. I worked with it in a project with tons of legacy C code. Not really simple, but very powerful.

For Java, you can search JNI (Java Native Interface), there're a lot of guides telling how to use it.

On a slightly different take from the other proposed solutions, you could look into Gearman
Basically, it's a broker system. You have workers, which can be written in C in your case, to which you can delegate tasks from your python / php / java / w/e code.
Strong point is that you decouple both applications (if you rewrite your app in another language, you'll probably have less work as you only need to get the app to talk to Gearman).
Bad thing is that I think you'll be adding overhead which could make the performance boost irrelevant.

Combining Java and C without gcj -- move C to Java or Java to C?

First, I have no experience doing this. But like the beginning of any good program, I have problem that I need to fix, so I'm willing to learn.
So many of you are probably already familiar with pdftk, the handy utility for handling various pdf-related tasks. So far as I can tell, most of these features are available in much newer, lighter libraries/extensions, except the one I need (and probably the only reason it still exists): merging form data files (fdf and xfdf) with a form PDF and getting a new file as the output.
The problem is that my server doesn't have gcj, which is fundamental to build/compile pdftk. I don't know if it's because I'm on Solaris or if it's for some other sysadmin-level reason, but I'm not getting gcj anytime soon. And there are no pre-compiled binaries for Solaris as far as I can find.
So I'm thinking that the MAKE file and C code can be rewritten to import the Java library (very ancient version of itext) directly, via javac.
But I'm not sure where to really start. All I know is:
I want a binary when I'm done, so that there won't be a need for a Java VM on every use.
The current app uses GCJ.
So my first thought was "Oh this is easy, I can probably just call the classes with some other C-based method", but instead of finding a simple method for doing this, I'm finding tons of lengthy posts on the various angles that this can be approached, etc.
Then I found a page on Sun's site on how to call other languages (like C) in a Java class. But the problems with that approach are:
I'd have to write a wrapper for the wrapper
I'd probably be better off skipping that part and writing the whole thing in Java
I ain't ready for that just yet if I can just import the classes with what is already there
I'm not clear on if I can compile and get a binary at the end or if I'm trapped in Java being needed every time.
Again, I apologize for my ignorance. I just need some advice and examples of how one would replace GCJ dependent C code with something that works directly with Java.
And of course if I'm asking one of those "if we could do that, we'd be rich already" type questions, let me know.

I'm not sure what you are looking for exactly, so I provided several answers.
If you have java code that needs to run, you must:
Run it in a jvm. You can start that vm within your own custom c-code, but it is still using a jvm
Rewrite it in another language.
Compile with an ahead-of-time compiler (eg gcj)
Incidentally, you could compile a copy of gcj in your home folder and use that. I believe the magic switch is --enable-languages=java,c (see: here for more)
If you have c-code you want to call from java, you have four options:
Java Native Interface (JNI). It seems you found this
Java Native Access (JNA). This is slower than JNI, but requires less coding and no wrapper c-code. It does require a jar and a library
Create a CLI utility and use Runtime.Exec(...) to call it.
Use some sort of Inter Process Communication to have the Java code ask the c-code to perform the operation and return the result.
Additional platform dependent options
Use JACOB (win32 only: com access)

I am not sure if I understand what you are looking for.
If you are looking to incorporate the C code into Java to make a native binary without the gcj, I think you are out of luck. You can include the C in Java, but it would be a primarily Java program meaning you would need the JVM on each run. Is there anything stopping you from compiling the gcj yourself?

Using Python from within Java [duplicate]

This question already has answers here:
Closed 13 years ago.
Possible Duplicate:
Java Python Integration
I have a large existing codebase written in 100% Java, but I would like to use Python for some new sections of it. I need to do some text and language processing, and I'd much rather use Python and a library like NLTK to do this.
I'm aware of the Jython project, but it looks like this represents a way to use Java and its libraries from within Python, rather than the other way round - am I wrong about this?
If not, what would be the best method to interface between Java and Python, such that (ideally) I can call a method in Python and have the result returned to Java?

I'm aware of the Jython project, but
it looks like this represents a way to
use Java and its libraries from within
Python, rather than the other way
round - am I wrong about this?
Yes, you are wrong. You can either call a command line interpreter to run python code using Jyton or use python code from Java. In the past there was also a python-to-Java compiler, but it got discontinued with Jython 2.2

I would write a Python module to handle the text and language processing, and then build a small bridge in jython that your java program can interact with. The jython bridge will be a very simple one, that's really only responsible for forwarding calls to the python module, and return the answer from the python module to the java module. Jython is really easy to use, and setup shouldn't take you more than 15 minutes.
Best of luck!

I don't think you could use NLTK from Jython, since it depends on Numpy which isn't ported to the JVM. If you need NLTK or any other native CPython extension, you might consider using some IPC mechanism to communicate between CPython and the JVM. That being said, there is a project to allow calling CPython from Java, called Jepp:
http://jepp.sourceforge.net/
The reverse (calling Java code from CPython) is the goal of JPype and javaclass:
sourceforge.net/projects/jpype/
pypi.python.org/pypi/javaclass/0.1
I've never used any of these project, so I cant't vow for their quality.

Jython is a Python implementation running on the JVM. You can find information about embedding Python in an existing Java app in the user guide.
I don't know the environment that you're working in, but be aware that mixing languages in the same app can quickly lead to a mess. I recommend creating Java interfaces to represent the operations that you plan to use, along with separately-packaged implementation classes that wrap the Python code.

IN my opinion, Jython is exactly what you are looking at.
It is an implementation of Python within the JVM; as such, you can freely exchange objects and, for instance, inherit from a Java class (with some limitations).
Note that, its major strength point (being on top of of JVM) is also its major drawback, because it cannot use all (C)Python extension written in C (or in any other compiled language); this may have an impact on what you are willing to do with your text processing.
For more information about what is Jython, its potential and its limitations, I suggest you reading the Jython FAQ.

Simply run the Python interpreter as a subprocess from within Java.
Write your Python functionality as a proper script, which reads from stdin and writes to stdout.
Use the Java Runtime class to spawn a subprocess that runs your Python script. This is very simple to do and provides a very clean interface.
Edit
import simplejson
import sys
for request in sys.stdin.readlines():
args = simplejson.loads( request )
result = myFunction( args['this'], args['that'] )
sys.stdout.writeline( simplejson.dumps( result ) + "\n" )
The interface is simple, structured and very low overhead.

Remember to first check from those paying for the development that they're OK with the codebase needing a developer who knows both Python and Java from now on, and other cost and maintainability effects you've undoubtedly already accounted for.
See: http://www.acm.org/about/se-code 1.06, 2.03, 2.09, 4.03, 4.05, 6.07

Accessing .NET/dll libraries/components from Java?

Are there inexpensive or free gateways from .NET to Java? I'm looking at some data acquisition hardware which has drivers for C/C++ and .NET -- I really don't want to do any programming in .NET.
Update: I haven't done what I originally wanted to do, but I've done something similar, using JNA to encapsulate some functions from a DLL, in order to control a USB hardware device from Java. (the DLL comes from the device manufacturer) It works really nicely. Thanks!

You could also try to use JNA for accessing the native library. JNA provides Java programs easy access to native shared libraries (DLLs on Windows) without writing anything but Java code—no JNI or native code is required. If their API is fairly straight foward, this might be the path of least resistance.
See their getting started guide where they call some native code (printf and GetSystemTime).

Well, there's JNBridge and EZ JCom, just from a Google search.
You could also use IKVM which is a slightly different approach.
(Any reason for not wanting to learn .NET, out of interest? It's a nice platform, and C# is a lovely language...)

If they have C++ versions of the drivers then you could write a wrapper around it using JNI and then load that in Java. JNI can be a bit of a pain, but it would let you use the C++ version of their drivers and not have to deal with .Net at all if you don't want.

I am partial to the recommendation to jump in the deep end with C# since it is so similar to Java. I did this and used IKVM to compile my favorite Java libs. to .NET assemblies and you get [nearly] all the core java runtime classes to boot, so if you tire of trying to find just the right C# collection type, you can always go back to java.util. (No generic collections though. Not sure why.)
Depending on what platform you're on, you have several choices for free IDEs too. For windows you can get Visual Studio Express for free but I also use SharpDevelop. You can also get the Mono IDE on Linux (and a few flavours of Unix, I think ?).
The C# learning curve is shallow if you already know Java. I only blew off 1.5 limbs on landmines that came out of nowhere for reasons I still don't understand, but workarounds were easy to come by. The worst thing about it was the darn developer docs which are AWFUL on account of being so slow. I really miss the snappiness of JavaDoc. Not only are the online docs incredibly slow, the problem is compounded by someones's iffy decision to put class summaries, constructors and methods/properties all on seperate pages so it just takes forever. Someone said to get the docs installer and install docs locally for a slightly improved experience. Not a bad idea I suppose.

I am author of jni4net, open source interprocess bridge between JVM and CLR. It's build on top of JNI and PInvoke. No C/C++ code needed. I hope it will help you.

If you have a Java application, the JNI mentioned by the others will be the way to go. You write some wrapper classes, and that's it.
If writing the wrappes is a too big task (depending on the number of methods you have to wrap), have a look at SWIG . I think it generates wrappers automatically, but I never actually used it.
If you want to code in the Java language, but you don't care if your program will run on the JRE/JVM, then you might as well use Microsoft J#. Basically, it's writing Java-Code wich is compiled to .NET-Bytecode and can use the .NET classes of the driver as well as your existing Java classes. With J# you will run into problems if your existing Java-code is newer than Java 1.4, look at this question on how to solve them.
From that point on, you could later add code in J#, C# or any other .NET language. However, you won't get back to the JRE/JVM easily.