calling matlab function from Java - java

Is it possible to call matlab function in java, if so, How can I use it.
For example there is a function in matlab called scatter3 and plotter3
How can I use them in Java.
Thank you

There are undocumented ways to call MATLAB from Java. You can learn a lot more about them from #YairAltman 's blog Undocumented MATLAB. Some of these methods are captured in the matlabcontrol package.
Since the functionality is undocumented and subject to change (and since matlabcontrol is not updated frequently), you should not rely on this ability for anything critical.

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Call FindExecutable in Java

I need to find out which default windows program is executed when opening a text (.txt) file. For this purpose I want to call the FindExecutable function from windows.
How can this be achieved from Java?
I hope I do not have to make a JNI-implementation to call Windows via C for this purpose.
You will have to use JNI. If you don't to code it yourself, you can use JNA - I believe that JNA has moved to GitHub, but the documentation at the previous link is the best I could find. Note that you will be using JNI no matter what (and deploying a native dll), but JNA does make it a lot easier.

How to call Java from C++ using SWIG?

I am able to call C++ code from Java using SWIG but I can't find any documentation on how to do the reverse (call Java from C++).
The official SWIG documentation says (http://www.swig.org/Doc1.3/Java.html#java_overview):
"SWIG enables a Java program to easily call into C/C++ code from Java. Historically, SWIG was not able to generate any code to call into Java code from C++. However, SWIG now supports full cross language polymorphism and code is generated to call up from C++ to Java when wrapping C++ virtual methods."
But I can't find where it says how to do it! Any help is greatly appreciated. Thank you.
Actually this is possible and I have implemented it based on inheriting a virtual class from C++ to Java.
You can find solution in chapter "24.5 Cross language polymorphism using directors" of Java part of SWIG document.
Based on the rather strange wording of the statement I'd say what you want isn't generally possible. "...call up from C++ to Java when wrapping C++ virtual methods." The "...call up..." leads me to believe you're calling protected or public members of an inherited interface and, "...when wrapping C++ virtual methods," leads me to conclude you can only do so when you're overriding an inherited interface. So it sounds like the actual use case is very narrow.
But then, I'm just basing this on the wording of the text you've pasted. It may or may not help you.
There is a tiny official example on calling Java callbacks from C++. Works well.
Your C++ callback class better be non-abstract, you gonna loose default constructor in Java otherwise.

Use JNI instead of JNA to call native code?

JNA seems a fair bit easier to use to call native code compared to JNI. In what cases would you use JNI over JNA?
JNA does not support mapping of c++ classes, so if you're using c++ library you will need a jni wrapper
If you need a lot of memory copying. For example, you call one method which returns you a large byte buffer, you change something in it, then you need to call another method which uses this byte buffer. This would require you to copy this buffer from c to java, then copy it back from java to c. In this case jni will win in performance because you can keep and modify this buffer in c, without copying.
These are the problems I've encountered. Maybe there's more. But in general performance is not that different between jna and jni, so wherever you can use JNA, use it.
EDIT
This answer seems to be quite popular. So here are some additions:
If you need to map C++ or COM, there is a library by Oliver Chafic, creator of JNAerator, called BridJ. It is still a young library, but it has many interesting features:
Dynamic C / C++ / COM interop : call C++ methods, create C++ objects (and subclass C++ classes from Java!)
Straightforward type mappings with good use of generics (including much nicer model for Pointers)
Full JNAerator support
works on Windows, Linux, MacOS X, Solaris, Android
As for memory copying, I believe JNA supports direct ByteBuffers, so memory copying can be avoided.
So, I still believe that wherever possible, it is better to use JNA or BridJ, and revert to jni if performance is critical, because if you need to call native functions frequently, performance hit is noticeable.
It's difficult to answer such a generic question. I suppose the most obvious difference is that with JNI, the type conversion is implemented on the native side of the Java/native border, while with JNA, the type conversion is implemented in Java. If you already feel quite comfortable with programming in C and have to implement some native code yourself, I would assume that JNI won't seem too complex. If you are a Java programmer and only need to invoke a third party native library, using JNA is probably the easiest path to avoid the perhaps not so obvious problems with JNI.
Although I've never benchmarked any differences, I would because of the design, at least suppose that type conversion with JNA in some situations will perform worse than with JNI. For example when passing arrays, JNA will convert these from Java to native at the beginning of each function call and back at the end of the function call. With JNI, you can control yourself when a native "view" of the array is generated, potentially only creating a view of a part of the array, keep the view across several function calls and at the end release the view and decide if you want to keep the changes (potentially requiring to copy the data back) or discard the changes (no copy required). I know you can use a native array across function calls with JNA using the Memory class, but this will also require memory copying, which may be unnecessary with JNI. The difference may not be relevant, but if your original goal is to increase application performance by implementing parts of it in native code, using a worse performing bridge technology seems not to be the most obvious choice.
You are writing code a few years ago before there was JNA or are targeting a pre 1.4 JRE.
The code you are working with is not in a DLL\SO.
You are working on code that is incompatible with LGPL.
That is only what I can come up with off the top of my head, though I am not a heavy user of either. It also seems like you might avoid JNA if you wanted a better interface than the one they provide but you could code around that in java.
By the way, in one of our projects, we kept a very small JNI foot print. We used protocol buffers for representing our domain objects and thus had only one native function to bridge Java and C (then of course that C function would call a bunch of other functions).
It's not a direct answer and I have no experience with JNA but, when I look at the Projects Using JNA and see names like SVNKit, IntelliJ IDEA, NetBeans IDE, etc, I'm tend to believe it's a pretty decent library.
Actually, I definitely think I would have used JNA instead of JNI when I had to as it indeed looks simpler than JNI (which has a boring development process). Too bad, JNA wasn't released at this time.
I actually did some simple benchmarks with JNI and JNA.
As others already pointed out, JNA is for convenience. You don't need to compile or write native code when using JNA. JNA's native library loader is also one of the best/easiest to use I've ever seen. Sadly, you can't use it for JNI it seems. (That's why I wrote an alternative for System.loadLibrary() that uses the path convention of JNA and supports seamless loading from the classpath (ie jars).)
The performance of JNA however, can be much worse than that of JNI. I made a very simple test that called a simple native integer increment function "return arg + 1;". Benchmarks done with jmh showed that JNI calls to that function are 15 times faster than JNA.
A more "complex" example where the native function sums up an integer array of 4 values still showed that JNI performance is 3 times faster than JNA. The reduced advantage was probably because of how you access arrays in JNI: my example created some stuff and released it again during each summing operation.
Code and test results can be found at github.
If you want JNI performance but are daunted by its complexity, you may consider using tools that generate JNI bindings automatically. For example, JANET (disclaimer: I wrote it) allows you to mix Java and C++ code in a single source file, and e.g. make calls from C++ to Java using standard Java syntax. For example, here's how you'd print a C string to the Java standard output:
native "C++" void printHello() {
const char* helloWorld = "Hello, World!";
`System.out.println(#$(helloWorld));`
}
JANET then translates the backtick-embedded Java into the appropriate JNI calls.
I investigated JNI and JNA for performance comparison because we needed to decide one of them to call a dll in project and we had a real time constraint. The results have showed that JNI has greater performance than JNA(approximately 40 times). Maybe there is a trick for better performance in JNA but it is very slow for a simple example.
Unless I'm missing something, isn't the main difference between JNA vs JNI that with JNA you can't call Java code from native (C) code?
In my specific application, JNI proved far easier to use. I needed to read and write continuous streams to and from a serial port -- and nothing else. Rather than try to learn the very involved infrastructure in JNA, I found it much easier to prototype the native interface in Windows with a special-purpose DLL that exported just six functions:
DllMain (required to interface with Windows)
OnLoad (just does an OutputDebugString so I can know when Java code attaches)
OnUnload (ditto)
Open (opens the port, starts read and write threads)
QueueMessage (queues data for output by the write thread)
GetMessage (waits for and returns data received by the read thread since the last call)

Making DDE calls from Java

Wondering if anyone has experience and/or sample code for making DDE calls from Java. I've done DDE using win32 calls from the stddde library (DdeInitialize, DdeClientTransaction), and could write a JNI wrapper for this, but I was thinking that it might be nice to do it from JNA
I also have some concerns about the fact that DDE calls need to occur from a thread with message pump, and I'm not entirely certain of how to force that in Java.
The calls we'll be doing are pretty simple (equivalent to VBA's DDInitiate, DDEExcecute and DDETerminate functions).
http://jdde.pretty-tools.com/
A decade ago I used Neva Object Technology's little DDE wrapper. Works, if you like that sort of thing. But IIRC, you should read the FAQ (although the things it does probably aren't so surprising if you have used DDE before).
JNA now has a DDE implementation in its contrib repository (the compiled classes are available in the jna-platform artifact):
https://github.com/java-native-access/jna/blob/master/contrib/platform/src/com/sun/jna/platform/win32/DdemlUtil.java
The unit tests contain many usage examples:
https://github.com/java-native-access/jna/blob/master/contrib/platform/test/com/sun/jna/platform/win32/DdemlUtilTest.java

issuing hard drive commands with java

Does anyone know of a way to issue commands to a hard drive within Java? Does Java even support this kind of hardware interaction?
For example, if I have a SCSI hard drive that I would like to inquiry, is there a pre-existing Java method to do this, or would I have to write my own?
http://en.wikipedia.org/wiki/SCSI has some general information on SCSI commands in case you aren't familiar.
Java doesn't support talking directly to hardware like that. However, you can use JNI to call a C/C++ function from Java that can.
Three words "JNI or JNA". I strongly recommend taking a look at the latter to see if it suits your situation, instead of just opting for JNI.
No, since Java runs in a "virtual" machine rather than a real one. But it could be used as a bridge as dj mentioned earlier using JNI.
According to Wikipedia JNI can also call assembly directly. JNI could be used to call complete programs written in C or C++
you need to write the HDD interface code in C/C++ and then call that from Java using JNI

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