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Java POI occurs InvalidOperationException when using Maven resource filiter

I have a jar which reads a excel template. If I use Maven shade to package without using resources filter and execute my jar, it is ok; However, I got some exception after I use Maven resources filter! The exception which occurs when I execute jar is as follows:
2018-01-05 11:20:45,631 [main] INFO tw.com.test.aop.SystemPointcuts- AOP Aro
und start : ServiceImpl.ServiceImpl.genExcel(..)(). param : 20171106,20171112
Exception in thread "main" org.apache.poi.openxml4j.exceptions.InvalidOperationE
xception: Can't open the specified file: 'C:\Users\seesaw\AppData\Local\Temp\Wee
klyTelecomAnalysis2553686971923113156.xlsx'
at org.apache.poi.openxml4j.opc.ZipPackage.<init>(ZipPackage.java:131)
at org.apache.poi.openxml4j.opc.OPCPackage.open(OPCPackage.java:246)
at org.apache.poi.openxml4j.opc.OPCPackage.open(OPCPackage.java:200)
at org.apache.poi.ss.usermodel.WorkbookFactory.create(WorkbookFactory.ja
va:90)
at tw.com.test.weeklyTelecomAnalysis.service.ServiceImpl.genExcel(Ser
viceImpl.java:73)
at tw.com.test.weeklyTelecomAnalysis.service.ServiceImpl$$FastClassBy
SpringCGLIB$$9d7f5cb8.invoke(<generated>)
at org.springframework.cglib.proxy.MethodProxy.invoke(MethodProxy.java:2
04)
at org.springframework.aop.framework.CglibAopProxy$CglibMethodInvocation
.invokeJoinpoint(CglibAopProxy.java:738)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(
ReflectiveMethodInvocation.java:157)
at org.springframework.aop.aspectj.MethodInvocationProceedingJoinPoint.p
roceed(MethodInvocationProceedingJoinPoint.java:85)
at tw.com.test.aop.SystemPointcuts.execAround(SystemPointcuts.java:59
)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.
java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAcces
sorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.springframework.aop.aspectj.AbstractAspectJAdvice.invokeAdviceMet
hodWithGivenArgs(AbstractAspectJAdvice.java:629)
at org.springframework.aop.aspectj.AbstractAspectJAdvice.invokeAdviceMet
hod(AbstractAspectJAdvice.java:618)
at org.springframework.aop.aspectj.AspectJAroundAdvice.invoke(AspectJAro
undAdvice.java:70)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(
ReflectiveMethodInvocation.java:179)
at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invok
e(ExposeInvocationInterceptor.java:92)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(
ReflectiveMethodInvocation.java:179)
at org.springframework.aop.framework.CglibAopProxy$DynamicAdvisedInterce
ptor.intercept(CglibAopProxy.java:673)
at tw.com.test.weeklyTelecomAnalysis.service.ServiceImpl$$EnhancerByS
pringCGLIB$$1731d8a8.genExcel(<generated>)
at tw.com.test.weeklyTelecomAnalysis.main.Entry.main(Entry.java:45)
Caused by: java.util.zip.ZipException: error in opening zip file
at java.util.zip.ZipFile.open(Native Method)
at java.util.zip.ZipFile.<init>(ZipFile.java:219)
at java.util.zip.ZipFile.<init>(ZipFile.java:149)
at java.util.zip.ZipFile.<init>(ZipFile.java:163)
at org.apache.poi.openxml4j.opc.internal.ZipHelper.openZipFile(ZipHelper
.java:157)
at org.apache.poi.openxml4j.opc.ZipPackage.<init>(ZipPackage.java:129)
... 23 more
here's my pom.xml
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>tw.com.test</groupId>
<artifactId>WeeklyTelecomAnalysis</artifactId>
<packaging>jar</packaging>
<version>1.0</version>
<name>WeeklyTelecomAnalysis</name>
<profiles>
<profile>
<id>prod</id>
<properties>
<pps.datasource>jdbc:oracle:thin:#11.111.11.111:1111:MYPROD</pps.datasource>
<pps.username>xxxxxx</pps.username>
<pps.password>xxxxxx</pps.password>
</properties>
</profile>
</profiles>
<properties>
<!-- 執行類別 -->
<mainClass>tw.com.test.weeklyTelecomAnalysis.main.Entry</mainClass>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<jdk.target.version>1.7</jdk.target.version>
<maven.compiler.source>${jdk.target.version}</maven.compiler.source>
<maven.compiler.target>${jdk.target.version}</maven.compiler.target>
<org.springframework.version>4.3.8.RELEASE</org.springframework.version>
</properties>
<dependencies>
<!-- Spring -->
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-context</artifactId>
<version>${org.springframework.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-orm</artifactId>
<version>${org.springframework.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-aspects</artifactId>
<version>${org.springframework.version}</version>
</dependency>
<!-- commons -->
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>com.springsource.org.apache.commons.dbcp</artifactId>
<version>1.2.2.osgi</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>com.springsource.org.apache.commons.lang</artifactId>
<version>2.6.0</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>com.springsource.org.apache.commons.pool</artifactId>
<version>1.5.3</version>
</dependency>
<!-- mybatis -->
<dependency>
<groupId>org.mybatis</groupId>
<artifactId>mybatis</artifactId>
<version>3.2.8</version>
</dependency>
<dependency>
<groupId>org.mybatis</groupId>
<artifactId>mybatis-spring</artifactId>
<version>1.2.2</version>
</dependency>
<!-- others -->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.12</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-log4j12</artifactId>
<version>1.7.2</version>
</dependency>
<dependency>
<groupId>mysql</groupId>
<artifactId>mysql-connector-java</artifactId>
<version>5.1.38</version>
</dependency>
<dependency>
<groupId>org.apache.poi</groupId>
<artifactId>poi-ooxml</artifactId>
<version>3.9</version>
</dependency>
<!-- <dependency> -->
<!-- <groupId>org.apache.poi</groupId> -->
<!-- <artifactId>poi</artifactId> -->
<!-- <version>3.16</version> -->
<!-- </dependency> -->
<!-- <dependency> -->
<!-- <groupId>org.apache.poi</groupId> -->
<!-- <artifactId>poi-ooxml</artifactId> -->
<!-- <version>3.16</version> -->
<!-- </dependency> -->
<!-- 安裝ojdbc6.jar至本地maven : mvn install:install-file -Dfile=ojdbc6.jar -DgroupId=com.oracle -DartifactId=ojdbc6 -Dversion=11.2.0 -Dpackaging=jar -->
<dependency>
<groupId>com.oracle</groupId>
<artifactId>ojdbc6</artifactId>
<version>11.2.0</version>
</dependency>
<dependency>
<groupId>org.junit</groupId>
<artifactId>com.springsource.org.junit</artifactId>
<version>4.9.0</version>
<scope>test</scope>
</dependency>
</dependencies>
<repositories>
<repository>
<id>com.springsource.repository.bundles.external</id>
<name>EBR External Release Repository</name>
<url>http://repository.springsource.com/maven/bundles/external</url>
</repository>
<repository>
<id>com.springsource.repository.libraries.external</id>
<name>EBR Libraries Release Repository</name>
<url>http://repository.springsource.com/maven/libraries/external</url>
</repository>
</repositories>
<build>
<finalName>WeeklyTelecomAnalysis</finalName>
<resources>
<resource>
<directory>src/main/resources</directory>
<filtering>true</filtering>
</resource>
</resources>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-shade-plugin</artifactId>
<version>1.7.1</version>
<executions>
<execution>
<phase>package</phase>
<goals>
<goal>shade</goal>
</goals>
<configuration>
<transformers>
<transformer
implementation="org.apache.maven.plugins.shade.resource.ManifestResourceTransformer">
<mainClass>${mainClass}</mainClass>
</transformer>
<transformer
implementation="org.apache.maven.plugins.shade.resource.AppendingTransformer">
<resource>META-INF/spring.handlers</resource>
</transformer>
<transformer
implementation="org.apache.maven.plugins.shade.resource.AppendingTransformer">
<resource>META-INF/spring.schemas</resource>
</transformer>
</transformers>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</build>
</project>
here's my application-context.xml which is for spring framework and jdbc config, I use Maven resource filter to replace some parameter, but after I do it, I got some error which is as mentioned above.
<?xml version="1.0" encoding="UTF-8"?>
<beans xmlns:aop="http://www.springframework.org/schema/aop"
xmlns="http://www.springframework.org/schema/beans" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xmlns:p="http://www.springframework.org/schema/p" xmlns:context="http://www.springframework.org/schema/context"
xmlns:util="http://www.springframework.org/schema/util" xmlns:tx="http://www.springframework.org/schema/tx"
xmlns:task="http://www.springframework.org/schema/task" xmlns:mvc="http://www.springframework.org/schema/mvc"
xsi:schemaLocation="http://www.springframework.org/schema/aop http://www.springframework.org/schema/aop/spring-aop-4.0.xsd
http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans-4.0.xsd
http://www.springframework.org/schema/context http://www.springframework.org/schema/context/spring-context-4.0.xsd
http://www.springframework.org/schema/task http://www.springframework.org/schema/task/spring-task-4.0.xsd
http://www.springframework.org/schema/tx http://www.springframework.org/schema/tx/spring-tx-4.0.xsd
http://www.springframework.org/schema/util http://www.springframework.org/schema/util/spring-util-4.0.xsd
http://www.springframework.org/schema/mvc http://www.springframework.org/schema/mvc/spring-mvc-4.0.xsd">
<!-- enable autowiring of components -->
<context:component-scan base-package="tw.com.test" />
<context:annotation-config />
<aop:aspectj-autoproxy />
<!-- MYPROD -->
<bean id="pps_dataSource" class="org.apache.commons.dbcp.BasicDataSource"
destroy-method="close" lazy-init="false">
<property name="driverClassName" value="oracle.jdbc.driver.OracleDriver" />
<property name="url" value="${pps.datasource}" />
<property name="username" value="${pps.username}" />
<property name="password" value="${pps.password}" />
<property name="maxActive" value="20" />
<property name="maxIdle" value="0" />
<property name="maxWait" value="180000" />
<property name="removeAbandoned" value="true" />
<property name="removeAbandonedTimeout" value="300" />
<property name="logAbandoned" value="true" />
<property name="testOnBorrow" value="true" />
<property name="testWhileIdle" value="true" />
<property name="validationQuery" value="select 1 from dual" />
</bean>
<bean id="pps_sqlSessionFactory" class="org.mybatis.spring.SqlSessionFactoryBean">
<property name="dataSource" ref="pps_dataSource" />
<property name="configLocation" value="classpath:mybatis/sqlMapConfig.xml" />
</bean>
<bean id="pps_sqlSessionTemplate" class="org.mybatis.spring.SqlSessionTemplate">
<constructor-arg index="0" ref="pps_sqlSessionFactory" />
</bean>
<bean id="pps_stsMapper" class="org.mybatis.spring.mapper.MapperScannerConfigurer">
<property name="sqlSessionTemplateBeanName" value="pps_sqlSessionTemplate" />
<property name="basePackage" value="tw.com.test.weeklyTelecomAnalysis.manual.pps" />
</bean>
</beans>
here's the program which read the excel template
public XSSFWorkbook genExcel(String fromDate, String toDate) throws Exception {
// get Excel template
Resource resource = new ClassPathResource("excel/WeeklyTelecomAnalysis.xlsx");
File excel = stream2file(resource.getInputStream(), "WeeklyTelecomAnalysis", ".xlsx");
XSSFWorkbook workbook = (XSSFWorkbook) WorkbookFactory.create(excel);
// style
this.setStyle(workbook);
XSSFSheet sheet1 = workbook.getSheet("WeeklyTelecomAnalysis"); // template
XSSFSheet sheet2 = workbook.createSheet("detail");
// start
createSheet1(sheet1, fromDate, toDate);
createSheet2(sheet2, fromDate, toDate);
return workbook;
}
public static File stream2file (InputStream in, String prefix, String suffix) throws IOException {
final File tempFile = File.createTempFile(prefix, suffix);
tempFile.deleteOnExit();
try (FileOutputStream out = new FileOutputStream(tempFile)) {
IOUtils.copy(in, out);
}
return tempFile;
}
could anyone help me?

It would seem like your .xlsx contains some values that shouldn't be replaced but are replaced by filtering, breaking the file.
I just want to use "mvn clean package -Pprod"to filter the parameters that are url,username and password in the application-context.xml rather than the excel template.
Given that, just do
<resources>
<resource>
<directory>src/main/resources</directory>
<filtering>false</filtering>
<includes>
<include>**/*.xlsx</include>
</includes>
</resource>
<resource>
<directory>src/main/resources</directory>
<filtering>true</filtering>
<includes>
<include>**/*.xml</include>
</includes>
</resource>
</resources>
to only filter your xml configs, leaving your excel template out.

FileNotFoundException in Spring

I am not able to resolve the issue am getting.
Full stacktrace:
12:14:08.172 [main] DEBUG o.s.core.env.StandardEnvironment - Adding [systemProperties] PropertySource with lowest search precedence
12:14:08.178 [main] DEBUG o.s.core.env.StandardEnvironment - Adding [systemEnvironment] PropertySource with lowest search precedence
12:14:08.178 [main] DEBUG o.s.core.env.StandardEnvironment - Initialized StandardEnvironment with PropertySources [systemProperties,systemEnvironment]
12:14:08.183 [main] INFO o.s.c.s.ClassPathXmlApplicationContext - Refreshing org.springframework.context.support.ClassPathXmlApplicationContext#24273305: startup date [Thu Mar 16 12:14:08 GMT 2017]; root of context hierarchy
12:14:08.222 [main] DEBUG o.s.core.env.StandardEnvironment - Adding [systemProperties] PropertySource with lowest search precedence
12:14:08.223 [main] DEBUG o.s.core.env.StandardEnvironment - Adding [systemEnvironment] PropertySource with lowest search precedence
12:14:08.223 [main] DEBUG o.s.core.env.StandardEnvironment - Initialized StandardEnvironment with PropertySources [systemProperties,systemEnvironment]
12:14:08.233 [main] INFO o.s.b.f.xml.XmlBeanDefinitionReader - Loading XML bean definitions from class path resource [org/postprocessor/config/dataSupport.xml]
Exception in thread "main" org.springframework.beans.factory.BeanDefinitionStoreException: IOException parsing XML document from class path resource [org/postprocessor/config/dataSupport.xml]; nested exception is java.io.FileNotFoundException: class path resource [org/postprocessor/config/dataSupport.xml] cannot be opened because it does not exist
at org.springframework.beans.factory.xml.XmlBeanDefinitionReader.loadBeanDefinitions(XmlBeanDefinitionReader.java:344)
at org.springframework.beans.factory.xml.XmlBeanDefinitionReader.loadBeanDefinitions(XmlBeanDefinitionReader.java:304)
at org.springframework.beans.factory.support.AbstractBeanDefinitionReader.loadBeanDefinitions(AbstractBeanDefinitionReader.java:181)
at org.springframework.beans.factory.support.AbstractBeanDefinitionReader.loadBeanDefinitions(AbstractBeanDefinitionReader.java:217)
at org.springframework.beans.factory.support.AbstractBeanDefinitionReader.loadBeanDefinitions(AbstractBeanDefinitionReader.java:188)
at org.springframework.beans.factory.support.AbstractBeanDefinitionReader.loadBeanDefinitions(AbstractBeanDefinitionReader.java:252)
at org.springframework.context.support.AbstractXmlApplicationContext.loadBeanDefinitions(AbstractXmlApplicationContext.java:127)
at org.springframework.context.support.AbstractXmlApplicationContext.loadBeanDefinitions(AbstractXmlApplicationContext.java:93)
at org.springframework.context.support.AbstractRefreshableApplicationContext.refreshBeanFactory(AbstractRefreshableApplicationContext.java:129)
at org.springframework.context.support.AbstractApplicationContext.obtainFreshBeanFactory(AbstractApplicationContext.java:612)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:513)
at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:139)
at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:83)
at org.postprocessor.dao.DaoMain.main(DaoMain.java:12)
Caused by: java.io.FileNotFoundException: class path resource [org/postprocessor/config/dataSupport.xml] cannot be opened because it does not exist
at org.springframework.core.io.ClassPathResource.getInputStream(ClassPathResource.java:172)
at org.springframework.beans.factory.xml.XmlBeanDefinitionReader.loadBeanDefinitions(XmlBeanDefinitionReader.java:330)
... 13 more
Bean config file dataSupport.xml is here:
<?xml version="1.0" encoding="UTF-8"?>
<beans xmlns="http://www.springframework.org/schema/beans"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:context="http://www.springframework.org/schema/context"
xsi:schemaLocation="
http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans-3.0.xsd
http://www.springframework.org/schema/context http://www.springframework.org/schema/context/spring-context-3.0.xsd">
<!-- <bean/> definitions here -->
<context:annotation-config />
<context:component-scan base-package="org.postprocessor.dao" />
<context:component-scan base-package="org.postprocessor.model" />
<context:component-scan base-package="org.postprocessor.util" />
<bean id="dataSource" class="org.apache.commons.dbcp.BasicDataSource">
<property name="driverClassName" value="org.apache.derby.jdbc.EmbeddedDriver"
/> <property name="url" value="jdbc:derby:postprocessor;create=true;" />
<!-- <property name="driverClassName" value="org.apache.derby.jdbc.ClientDriver" />
<property name="url" value="jdbc:derby://localhost:1527/db;create=true;" /> -->
<property name="initialSize" value="1" />
<property name="maxActive" value="1" />
</bean>
<bean id="daoImpl" class="org.postprocessor.dao.DaoImpl" scope="prototype">
<property name="dataSource" ref="dataSource" />
</bean>
<bean id="messageSource"
class="org.springframework.context.support.ResourceBundleMessageSource">
<property name="basenames">
<list>
<value>resourceBundles/general</value>
<value>resourceBundles/codeLists/codelist_eortcqlqc30</value>
<value>resourceBundles/codeLists/codelist_eortcqlqlc13</value>
<value>resourceBundles/codeLists/codelist_eq5d3l</value>
<value>resourceBundles/codeLists/codelist_eq5d5l</value>
<value>resourceBundles/codeLists/codelist_noncompletedquestionnaires</value>
<value>resourceBundles/codeLists/codelist_pgis</value>
<value>resourceBundles/codeLists/codelist_silc</value>
</list>
</property>
</bean>
snipped from pom.xml:
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>SBP</groupId>
<artifactId>SBP</artifactId>
<version>0.0.1-SNAPSHOT</version>
<name>gt20047</name>
<packaging>jar</packaging>
<dependencies>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-web</artifactId>
<version>4.3.1.RELEASE</version>
</dependency>
<dependency>
<groupId>log4j</groupId>
<artifactId>log4j</artifactId>
<version>1.2.17</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.springframework/spring-asm -->
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-asm</artifactId>
<version>3.1.4.RELEASE</version>
</dependency>
<!-- https://mvnrepository.com/artifact/asm/asm-all -->
<dependency>
<groupId>asm</groupId>
<artifactId>asm-all</artifactId>
<version>3.3.1</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.apache.derby/derbynet -->
<dependency>
<groupId>org.apache.derby</groupId>
<artifactId>derbynet</artifactId>
<version>10.12.1.1</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.apache.derby/derbyclient -->
<dependency>
<groupId>org.apache.derby</groupId>
<artifactId>derbyclient</artifactId>
<version>10.12.1.1</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.springframework/spring-jdbc -->
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-jdbc</artifactId>
<version>2.0.6</version>
</dependency>
<!-- https://mvnrepository.com/artifact/commons-dbcp/commons-dbcp -->
<dependency>
<groupId>commons-dbcp</groupId>
<artifactId>commons-dbcp</artifactId>
<version>1.4</version>
</dependency>
<!-- https://mvnrepository.com/artifact/commons-pool/commons-pool -->
<dependency>
<groupId>commons-pool</groupId>
<artifactId>commons-pool</artifactId>
<version>1.6</version>
</dependency>
<dependency>
<groupId>com.opencsv</groupId>
<artifactId>opencsv</artifactId>
<version>3.7</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.apache.commons/commons-io -->
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-io</artifactId>
<version>1.3.2</version>
</dependency>
<!-- https://mvnrepository.com/artifact/com.google.guava/guava -->
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>19.0</version>
</dependency>
<!-- https://mvnrepository.com/artifact/commons-collections/commons-collections -->
<dependency>
<groupId>commons-collections</groupId>
<artifactId>commons-collections</artifactId>
<version>3.0</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-csv</artifactId>
<version>1.3</version>
</dependency>
<dependency>
<groupId>net.lingala.zip4j</groupId>
<artifactId>zip4j</artifactId>
<version>1.3.2</version>
</dependency>
</dependencies>
<build>
<finalName>gt20047</finalName>
<sourceDirectory>src</sourceDirectory>
<plugins>
<plugin>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.1</version>
<configuration>
<source>1.7</source>
<target>1.7</target>
</configuration>
</plugin>
<plugin>
<artifactId>maven-jar-plugin</artifactId>
<version>2.3</version>
<configuration>
<archive>
<manifest>
<!-- Jar file entry point -->
<mainClass>org.postprocessor.dao.DaoMain</mainClass>
</manifest>
</archive>
</configuration>
</plugin>
</plugins>
</build>
am not able to figure out where is the issue, my jar file doesn't have this config folder
DaoMain.java
package org.postprocessor.dao;
import java.io.File;
import org.postprocessor.util.FileZipper;
import org.springframework.context.ApplicationContext;
import org.springframework.context.support.ClassPathXmlApplicationContext;
public class DaoMain {
public static void main(String[] args) {
ApplicationContext ctx= new ClassPathXmlApplicationContext("classpath:/org/postprocessor/config/dataSupport.xml");
DaoImpl daoImpl=null;
FileZipper fileZipper=null;
try{
daoImpl= ctx.getBean("daoImpl",DaoImpl.class);
fileZipper= ctx.getBean("fileZipper",FileZipper.class);
daoImpl.startProcess();
fileZipper.zipFile(new File("").getAbsolutePath()+"/output");
}
catch(Exception e){
e.printStackTrace();
}
finally{
((ClassPathXmlApplicationContext) ctx).close();
}
}
}
How to solve this issue?

Looks like the main problem is at this line:
new ClassPathXmlApplicationContext("classpath:/org/postprocessor/config/dataSupport.xml");
You are trying to build context from classpath. Thus you have to locate your config file accessible from a classpath of your project.
You using Maven for building your project. Maven has defined project structure for code sources:
/src/main/java
and for resources:
/src/main/resorces
You can find more here: Introduction to the Standard Directory Layout
If you want to make your file accessible from classpath you have to put it exactly under - resources/ folder:
Now you main() will be, something like:
public static void main(String[] args) {
ApplicationContext ctx= new ClassPathXmlApplicationContext("classpath:config/dataSupport.xml");
Object dataSource = ctx.getBean("userRepo");
System.out.println(dataSource.getClass().getName());
// use your beans here
I created just demo bean. And here is output:
2017-03-20 15:22:40 INFO ClassPathXmlApplicationContext - Refreshing org.springframework.context.support.ClassPathXmlApplicationContext#16f65612: startup date [Mon Mar 20 15:22:40 EET 2017]; root of context hierarchy
2017-03-20 15:22:40 INFO XmlBeanDefinitionReader - Loading XML bean definitions from class path resource [config/dataSupport.xml]
demo.repository.UserRepository
BTW you can use try with resources for application context:
try(ClassPathXmlApplicationContext ctx =
new ClassPathXmlApplicationContext("classpath:config/dataSupport.xml")) {
// use your beans here
}
Additional resources:
using classpath: in spring
Java Spring - How to use classpath to specify a file location?

Your XML files are not well formed.
While I do not know if this is the issue, it may be the root cause of why your project is not taking the files correctly in the first place.
Your <beans> tag does not have a closing tag. Try putting </beans> at the end of the file.
Also, your pom.xml file has the same issue. The <project> is not closed. Try putting </project> at the end of the file.

I think the following should work:
ApplicationContext ctx= new ClassPathXmlApplicationContext("org/postprocessor/config/dataSupport.xml");
You don't need to specify "classpath" since you already use ClassPathXmlApplicationContext, and you have extra slash in the beginning.

move:
src/org/postprocessor/config/dataSupport.xml
to:
src/main/resources/org/postprocessor/config/dataSupport.xml

By default maven-compiler-plugin not includes non-java files. which left you with two options.
1. move your resource files (.properties, .xml etc) to "src/main/resources" (recomended.)
2. use maven resource plugin
<plugin>
<artifactId>maven-resources-plugin</artifactId>
<version>2.6</version>
<executions>
<execution>
<id>copy-resources</id>
<phase>validate</phase>
<goals>
<goal>copy-resources</goal>
</goals>
<configuration>
<outputDirectory>${basedir}/path/where/you/want</outputDirectory>
<resources>
<resource>
<directory>${basedir}</directory>
<includes>
<include>**/*.xml</include>
</includes>
</resource>
</resources>
</configuration>
</execution>
</executions>
</plugin>

Issue running runnable Jar packaged using Maven plugin with Spring dependencies

I have created a runnable jar using maven assembly plugin:
<build>
<plugins>
<plugin>
<artifactId>maven-assembly-plugin</artifactId>
<configuration>
<archive>
<manifest>
<mainClass>com.loaders.FundLoader</mainClass>
</manifest>
</archive>
<descriptorRefs>
<descriptorRef>jar-with-dependencies</descriptorRef>
</descriptorRefs>
</configuration>
</plugin>
</plugins>
</build>
I have some Spring dependencies packaged into the jar.
When I run the program using intellIj the program runs perfectly fine.
However when I run the program from the command line using: java -jar myjar.jar
I got the following exception:
Exception in thread "main" org.springframework.beans.factory.xml.XmlBeanDefiniti
onStoreException: Line 6 in XML document from class path resource [spring/loader-context.xml] is invalid; nested exception is org.xml.sax.SAXParseExceptio
n; lineNumber: 6; columnNumber: 120; cvc-elt.1: Cannot find the declaration of e
lement 'beans'.
Attached my config file: loader-context.xml
<?xml version="1.0" encoding="UTF-8"?>
<beans xmlns="http://www.springframework.org/schema/beans" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xmlns:context="http://www.springframework.org/schema/context"
xsi:schemaLocation="http://www.springframework.org/schema/beans
http://www.springframework.org/schema/beans/spring-beans-3.0.xsd
http://www.springframework.org/schema/context http://www.springframework.org/schema/context/spring-context.xsd">
<context:annotation-config />
<bean class="org.springframework.beans.factory.config.PropertyPlaceholderConfigurer">
<property name="locations">
<list>
<value>classpath:hibernate.properties</value>
</list>
</property>
<property name="ignoreResourceNotFound" value="false"/>
</bean>
<bean id="dataSource" class="org.apache.commons.dbcp.BasicDataSource" destroy-method="close">
<property name="driverClassName" value="${hibernate.driver.class.name}" />
<property name="url" value="${hibernate.jdbc.url}" />
<property name="username" value="${hibernate.username}" />
<property name="password" value="${hibernate.password}" />
<property name="defaultAutoCommit" value="false" />
</bean>
</beans>
And then the content of my pom.xml:
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>com.operations</groupId>
<artifactId>parent</artifactId>
<version>3.0.2-SNAPSHOT</version>
</parent>
<artifactId>loader</artifactId>
<name>[FOR] loader</name>
<packaging>jar</packaging>
<build>
<plugins>
<plugin>
<artifactId>maven-assembly-plugin</artifactId>
<configuration>
<archive>
<manifest>
<mainClass>com.loaders.FundLoader</mainClass>
</manifest>
</archive>
<descriptorRefs>
<descriptorRef>jar-with-dependencies</descriptorRef>
</descriptorRefs>
</configuration>
</plugin>
</plugins>
</build>
<dependencies>
<dependency>
<groupId>net.sf.opencsv</groupId>
<artifactId>opencsv</artifactId>
<version>2.3</version>
</dependency>
<dependency>
<groupId>com.oracle</groupId>
<artifactId>ojdbc14</artifactId>
<version>10.2.0.4.0</version>
</dependency>
<dependency>
<groupId>commons-lang</groupId>
<artifactId>commons-lang</artifactId>
<version>2.5</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-context</artifactId>
<version>3.0.5.RELEASE</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-beans</artifactId>
<version>3.0.5.RELEASE</version>
</dependency>
<dependency>
<groupId>commons-dbcp</groupId>
<artifactId>commons-dbcp</artifactId>
<version>1.4</version>
<scope>runtime</scope>
</dependency>
</dependencies>
Could someone please help me out ?
Thank you

Spring applications cannot be simly packaged as a fat JAR with the maven-assembly-plugin, for each Spring module JAR has its schemas located in a file that is always at the same location (META-INF/spring.schemas).
When you flatten all your dependencies in one final JAR, you will obviously only has one of these spring.schemas files in your resulting JAR, hence your issue.
I would suggest to either use Spring Boot for developing your application, as it includes a plugin that deals nicely with Spring JARs.
Or you can also use onejar-maven-plugin, which also packages the fat JAR in a specific way that avoids having this issue.
Other solutions also exists, such as the maven-shade-plugin and its AppendingTransformer
You can even provide merged versions of the problematic files by yourself, as project resources, and then excluding the originals from being assembled.

ContextLoader - Context initialization failed

Unable to Start the deployed war file.
I got the following error at the terminal
[ERROR] 17:23:17 ContextLoader - Context initialization failed
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'entityManagerFactory' defined in resource loaded from byte array: Cannot resolve reference to bean 'blPersistenceUnitManager' while setting bean property 'persistenceUnitManager';
nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'blPersistenceUnitManager': Injection of resource dependencies failed;
nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'blMergedDataSources' defined in resource loaded from byte array: Cannot resolve reference to bean 'webDS' while setting bean property 'sourceMap' with key [TypedStringValue: value [jdbc/web], target type [null]];
The eventual following stack trace is caused by an error thrown for debugging purposes as well as to attempt to terminate the thread which caused the illegal access, and has no functional impact.
Context.xml
<?xml version="1.0" encoding="UTF-8"?>
<Context>
<!-- Default set of monitored resources -->
<WatchedResource>WEB-INF/web.xml</WatchedResource>
<ResourceLink global="jdbc/web" name="jdbc/web" type="javax.sql.DataSource"/>
</Context>
Server.xml
<?xml version="1.0" encoding="UTF-8"?>
<Server port="8005" shutdown="SHUTDOWN">
<Listener SSLEngine="on" className="org.apache.catalina.core.AprLifecycleListener"/>
<Listener className="org.apache.catalina.core.JasperListener"/>
<Listener className="org.apache.catalina.core.JreMemoryLeakPreventionListener"/>
<Listener className="org.apache.catalina.mbeans.ServerLifecycleListener"/>
<Listener className="org.apache.catalina.mbeans.GlobalResourcesLifecycleListener"/>
<GlobalNamingResources>
<Resource auth="Container" description="User database that can be updated and saved" factory="org.apache.catalina.users.MemoryUserDatabaseFactory" name="UserDatabase" pathname="conf/tomcat-users.xml" type="org.apache.catalina.UserDatabase"/>
<Resource auth="Container"
driverClassName="com.mysql.jdbc.Driver"
initialSize="5"
maxActive="120"
maxIdle="5"
maxWait="5000"
name="jdbc/web"
username="root"
password="admin123"
poolPreparedStatements="true"
type="javax.sql.DataSource"
url="jdbc:mysql://localhost:3306/broadleaf"
validationQuery="select 1"/>
</GlobalNamingResources>
<Service name="Catalina">
<Connector connectionTimeout="20000" port="8080" protocol="HTTP/1.1" redirectPort="8443"/>
<!-- Define an AJP 1.3 Connector on port 8009 -->
<Connector port="8009" protocol="AJP/1.3" redirectPort="8443"/>
<Engine defaultHost="localhost" name="Catalina">
<Realm className="org.apache.catalina.realm.UserDatabaseRealm" resourceName="UserDatabase"/>
<Host appBase="webapps" autoDeploy="true" name="localhost" unpackWARs="true" xmlNamespaceAware="false" xmlValidation="false">
</Host>
</Engine>
</Service>
</Server>
Thank you for your valuable advice. I have edited the post with server.xml and context.xml.
I am following broadleafcommerce's tutorial [http://www.broadleafcommerce.com/docs/core/current/getting-started].
In order to configure Switching to MySql I have made changes as in this link [http://www.broadleafcommerce.com/docs/core/current/tutorials/getting-started-tutorials/switch-to-mysql-tutorial]
applicationContext-servlet.xml
<?xml version="1.0" encoding="UTF-8"?>
<beans xmlns="http://www.springframework.org/schema/beans"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xmlns:context="http://www.springframework.org/schema/context"
xmlns:aop="http://www.springframework.org/schema/aop"
xmlns:mvc="http://www.springframework.org/schema/mvc"
xsi:schemaLocation="http://www.springframework.org/schema/beans
http://www.springframework.org/schema/beans/spring-beans-3.2.xsd
http://www.springframework.org/schema/context
http://www.springframework.org/schema/context/spring-context-3.2.xsd
http://www.springframework.org/schema/aop
http://www.springframework.org/schema/aop/spring-aop-3.2.xsd
http://www.springframework.org/schema/mvc
http://www.springframework.org/schema/mvc/spring-mvc-3.2.xsd">
<context:component-scan base-package="org.broadleafcommerce.common.web"/>
<context:component-scan base-package="org.broadleafcommerce.profile.web.controller"/>
<context:component-scan base-package="org.broadleafcommerce.profile.web.core.service.login"/>
<context:component-scan base-package="com.heatclinic.sample" />
<!-- Turn on AOP annotations (required by Broadleaf) -->
<aop:config/>
<bean class="org.broadleafcommerce.core.web.catalog.ProductHandlerMapping">
<property name="order" value="2"/>
</bean>
<bean class="org.broadleafcommerce.cms.web.PageHandlerMapping">
<property name="order" value="3"/>
</bean>
<bean class="org.broadleafcommerce.core.web.catalog.CategoryHandlerMapping">
<property name="order" value="4"/>
</bean>
<context:component-scan base-package="com.heatclinic.controller" />
<mvc:annotation-driven/>
<mvc:interceptors>
<bean id="webContentInterceptor" class="org.broadleafcommerce.core.web.interceptor.NonResourceWebContentInterceptor">
<property name="cacheSeconds" value="0"/>
<property name="useExpiresHeader" value="true"/>
<property name="useCacheControlHeader" value="true"/>
<property name="useCacheControlNoStore" value="true"/>
</bean>
<bean class="org.springframework.web.servlet.i18n.LocaleChangeInterceptor">
<property name="paramName" value="blLocaleCode"/>
</bean>
</mvc:interceptors>
<bean id="localeResolver" class="org.broadleafcommerce.common.web.BroadleafCookieLocaleResolver" />
<mvc:resources order="-10" location="/img/, classpath:/common_style/img/" mapping="/img/**" />
<mvc:resources order="-10" location="/fonts/, classpath:/common_style/fonts/" mapping="/fonts/**" />
<mvc:resources order="-10" location="WEB-INF/favicon.ico" mapping="/favicon.ico" />
<bean class="org.springframework.web.servlet.handler.SimpleUrlHandlerMapping">
<property name="order" value="-10" />
<property name="mappings">
<props>
<prop key="/js/**">blJsResources</prop>
<prop key="/css/**">blCssResources</prop>
</props>
</property>
</bean>
<!-- Set up the view resolver to be used by Spring -->
<bean class="org.broadleafcommerce.common.web.BroadleafThymeleafViewResolver">
<property name="templateEngine" ref="blWebTemplateEngine" />
<property name="order" value="1" />
<property name="cache" value="${thymeleaf.view.resolver.cache}" />
<property name="fullPageLayout" value="layout/fullPageLayout" />
<property name="characterEncoding" value="UTF-8" />
<property name="layoutMap">
<map>
<entry key="account/" value="layout/accountLayout" />
<entry key="catalog/" value="NONE" />
<entry key="checkout/" value="layout/checkoutLayout" />
<entry key="checkout/confirmation" value="layout/fullPageNoNavLayout" />
<entry key="layout/" value="NONE" />
<entry key="content/NONE" value="NONE" />
</map>
</property>
</bean>
<bean id="blShippingInfoFormValidator" class="org.broadleafcommerce.core.web.checkout.validator.USShippingInfoFormValidator" />
</beans>
Even though I have added hibernate-3.2.7.ga.jar file to the lib directory, I get this exception -ClassLoadingException:Unable to load class [org.hibernate.dialect.MySQL5InnoDBDialect] .
[ERROR] 11:09:39 ContextLoader - Context initialization failed
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'blEntityManagerFactorySecureInfo' defined in resource loaded from byte array: Invocation of init method failed; nested exception is javax.persistence.PersistenceException: [PersistenceUnit: blSecurePU] Unable to build EntityManagerFactory
Caused by: javax.persistence.PersistenceException: [PersistenceUnit: blSecurePU] Unable to build EntityManagerFactory ....
Caused by: org.hibernate.HibernateException: Dialect class not found: org.hibernate.dialect.MySQL5InnoDBDialect ...
Caused by: org.hibernate.service.classloading.spi.ClassLoadingException: Unable to load class [org.hibernate.dialect.MySQL5InnoDBDialect ] ....
Caused by: java.lang.ClassNotFoundException: Could not load requested class : org.hibernate.dialect.MySQL5InnoDBDialect ...
But the jar file do have the class.
3576 Wed Jun 03 16:19:06 PDT 2009 org/hibernate/dialect/MckoiDialect.class
5326 Wed Jun 03 16:19:06 PDT 2009 org/hibernate/dialect/MimerSQLDialect.class
595 Wed Jun 03 16:19:06 PDT 2009 org/hibernate/dialect/MySQL5Dialect.class
648 Wed Jun 03 16:19:06 PDT 2009 org/hibernate/dialect/MySQL5InnoDBDialect.class
9682 Wed Jun 03 16:19:06 PDT 2009 org/hibernate/dialect/MySQLDialect.class
642 Wed Jun 03 16:19:06 PDT 2009 org/hibernate/dialect/MySQLInnoDBDialect.class
544 Wed Jun 03 16:19:06 PDT 2009 org/hibernate/dialect/MySQLMyISAMDialect.class
And also I have not mentioned anything about the hibernate dependencies in the pom.xml file.
pom.xml
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>com.heatclinic</groupId>
<artifactId>ecommerce-website</artifactId>
<version>1.0</version>
<packaging>pom</packaging>
<name>ecommerce</name>
<url>http://www.blc-archetype.com</url>
<properties>
<blc.version>3.1.8-GA</blc.version>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
</properties>
<description>My Company's eCommerce Website</description>
<repositories>
<repository>
<id>public snapshots</id>
<name>public snapshots</name>
<url>http://nexus.broadleafcommerce.org/nexus/content/repositories/snapshots/</url>
</repository>
</repositories>
<build>
<pluginManagement>
<plugins>
<plugin>
<groupId>org.eclipse.m2e</groupId>
<artifactId>lifecycle-mapping</artifactId>
<version>1.0.0</version>
<configuration>
<lifecycleMappingMetadata>
<pluginExecutions>
<pluginExecution>
<pluginExecutionFilter>
<groupId>org.zeroturnaround</groupId>
<artifactId>jrebel-maven-plugin</artifactId>
<versionRange>[1.0,)</versionRange>
<goals>
<goal>generate</goal>
</goals>
</pluginExecutionFilter>
<action>
<ignore />
</action>
</pluginExecution>
<pluginExecution>
<pluginExecutionFilter>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-antrun-plugin</artifactId>
<versionRange>[1.3,)</versionRange>
<goals>
<goal>run</goal>
</goals>
</pluginExecutionFilter>
<action>
<ignore />
</action>
</pluginExecution>
<pluginExecution>
<pluginExecutionFilter>
<groupId>
org.codehaus.mojo
</groupId>
<artifactId>
build-helper-maven-plugin
</artifactId>
<versionRange>
[1.7,)
</versionRange>
<goals>
<goal>
timestamp-property
</goal>
</goals>
</pluginExecutionFilter>
<action>
<ignore></ignore>
</action>
</pluginExecution>
<pluginExecution>
<pluginExecutionFilter>
<groupId>
org.codehaus.mojo
</groupId>
<artifactId>
keytool-maven-plugin
</artifactId>
<versionRange>
[1.5,)
</versionRange>
<goals>
<goal>clean</goal>
<goal>generateKeyPair</goal>
</goals>
</pluginExecutionFilter>
<action>
<ignore></ignore>
</action>
</pluginExecution>
</pluginExecutions>
</lifecycleMappingMetadata>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>2.0.2</version>
<configuration>
<source>1.6</source>
<target>1.6</target>
</configuration>
</plugin>
<plugin>
<groupId>org.zeroturnaround</groupId>
<artifactId>jrebel-maven-plugin</artifactId>
<version>1.1.3</version>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>build-helper-maven-plugin</artifactId>
<version>1.7</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>2.10</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-war-plugin</artifactId>
<version>2.1.1</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<version>2.3.2</version>
</plugin>
<plugin>
<artifactId>maven-clean-plugin</artifactId>
<configuration>
<excludeDefaultDirectories>true</excludeDefaultDirectories>
<filesets>
<fileset>
<directory>target</directory>
<includes>
<include>**/*</include>
</includes>
</fileset>
</filesets>
</configuration>
</plugin>
</plugins>
</pluginManagement>
</build>
<profiles>
<profile>
<id>default-profile</id>
<activation>
<activeByDefault>true</activeByDefault>
<file>
<exists>${java.home}/../lib/tools.jar</exists>
</file>
</activation>
<properties>
<toolsjar>${java.home}/../lib/tools.jar</toolsjar>
</properties>
</profile>
<profile>
<id>mac-profile</id>
<activation>
<activeByDefault>false</activeByDefault>
<file>
<exists>${java.home}/../Classes/classes.jar</exists>
</file>
</activation>
<properties>
<toolsjar>${java.home}/../Classes/classes.jar</toolsjar>
</properties>
</profile>
</profiles>
<dependencyManagement>
<dependencies>
<!-- Activated by the profiles above for the paths to tools.jar-->
<dependency>
<groupId>com.sun</groupId>
<artifactId>tools</artifactId>
<version>[1.6,)</version>
<scope>system</scope>
<systemPath>${toolsjar}</systemPath>
</dependency>
<dependency>
<groupId>com.heatclinic</groupId>
<artifactId>core</artifactId>
<version>1.0</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
<!--Broadleaf libraries -->
<dependency>
<groupId>org.broadleafcommerce</groupId>
<artifactId>broadleaf-common</artifactId>
<version>${blc.version}</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.broadleafcommerce</groupId>
<artifactId>broadleaf-profile</artifactId>
<version>${blc.version}</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.broadleafcommerce</groupId>
<artifactId>broadleaf-profile-web</artifactId>
<version>${blc.version}</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.broadleafcommerce</groupId>
<artifactId>broadleaf-framework</artifactId>
<version>${blc.version}</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.broadleafcommerce</groupId>
<artifactId>broadleaf-framework-web</artifactId>
<version>${blc.version}</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.broadleafcommerce</groupId>
<artifactId>broadleaf-admin-module</artifactId>
<version>${blc.version}</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.broadleafcommerce</groupId>
<artifactId>broadleaf-contentmanagement-module</artifactId>
<version>${blc.version}</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.broadleafcommerce</groupId>
<artifactId>broadleaf-open-admin-platform</artifactId>
<version>${blc.version}</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.broadleafcommerce</groupId>
<artifactId>integration</artifactId>
<version>${blc.version}</version>
<type>jar</type>
<classifier>tests</classifier>
<scope>test</scope>
</dependency>
<!-- Other dependencies -->
<dependency>
<groupId>org.hsqldb</groupId>
<artifactId>hsqldb</artifactId>
<version>2.3.1</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>commons-dbcp</groupId>
<artifactId>commons-dbcp</artifactId>
<version>1.4</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>servlet-api</artifactId>
<version>2.5</version>
<type>jar</type>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.testng</groupId>
<artifactId>testng</artifactId>
<version>5.9</version>
<type>jar</type>
<classifier>jdk15</classifier>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.apache.tomcat</groupId>
<artifactId>tomcat-jdbc</artifactId>
<version>7.0.30</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>mysql</groupId>
<artifactId>mysql-connector-java</artifactId>
<version>5.1.26</version>
<type>jar</type>
<scope>provided</scope>
</dependency>
</dependencies>
</dependencyManagement>
<modules>
<module>admin</module>
<module>core</module>
<module>site</module>
</modules>
</project>
I don't find the file named applicationContext-servlet-cms-contentClient.xml in the project.

I wish you'd posted your xml for your spring configuration so I could see if there were any more issues but at the very least you'll need to define all your jndi names in tomcat - in server.xml as a <resource /> in <globalnames /> and context.xml as <resourcelink /> in the <context /> tag. Server.xml will look something like this (you will need to select proper setting for the type of db your using):
<GlobalNamingResources>
<Resource auth="Container"
driverClassName="com.mysql.jdbc.Driver"
initialSize="5"
maxActive="120"
maxIdle="5"
maxWait="5000"
name="jdbc/web"
username="user"
password="password"
poolPreparedStatements="true"
type="javax.sql.DataSource"
url="jdbc:mysql://localhost:3306/dbname"
validationQuery="select 1"/>
</GlobalNamingResources>
Although don't delete resources already defined. And this in context.xml:
<context>
<ResourceLink global="jdbc/web" name="jdbc/web" type="javax.sql.DataSource"/>
</context>
I don't want to get dunned for including a link but if you search "tomcat jndi datasource how to" I think you'll find at least one thorough example of what's needed. You'll also need to include the jar containing your driver (com.mysql.jdbc.Driver in this example) in tomcat/lib.

Finally I got answer to my question. Adding hibernate dependencies to my pom.xml did the trick. Also don't forget to add hibernate jar(hibernate-3.2.7.ga.jar) file to lib directory.
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate</artifactId>
<version>3.2.7.ga</version>
<type>jar</type>
<scope>provided</scope>
</dependency>
I think adding the above code resolved the ClassLoadingException:Unable to load class [org.hibernate.dialect.MySQL5InnoDBDialect] which was mentioned in my post.
Answers from Bill fixed JNDI naming error.

Unresolved constraint in bundle, missing requirement osgi.wiring.package

I am having a project using OSGi-(felix), SpringDM, hibernate, maven. when I installed bundle, it is ok, the output when I run bundle id is:
LastModified 1384619994484
Headers [Manifest-Version=1.0, Bundle-Vendor=NguyenVinhLinh, Bnd-LastModified=1384619954778, Tool=Bnd-2.1.0.20130426-122213, Bundle-Name=DrugManager, Built-By=nguyenvinhlinh, Import-Package=org.hibernate,org.hibernate.classic,org.hibernate.criterion,org.springframework.beans.factory;version="[2.5,3)",org.springframework.core.io;version="[2.5,3)",org.springframework.transaction.annotation;version="[2.5,3)", Bundle-SymbolicName=DrugManagerDAO, Export-Package=drug,drugGroup,model;version="1.0.0", Bundle-Version=1.0.0, Build-Jdk=1.7.0_45, Created-By=Apache Maven Bundle Plugin, Bundle-ManifestVersion=2]
BundleContext null
Revisions [169.0]
BundleId 169
SymbolicName DrugManagerDAO
RegisteredServices null
ServicesInUse null
Version 1.0.0
Location file:/home/nguyenvinhlinh/Projects/felix-framework-4.2.1/bundle/DrugManager-1.0.jar
State 2
Bundle 169|Installed | 1|DrugManagerDAO (1.0.0)
This is what I see, when I start this bundle:
org.osgi.framework.BundleException: Unresolved constraint in bundle DrugManagerDAO [169]: Unable to resolve 169.0: missing requirement [169.0] osgi.wiring.package; (osgi.wiring.package=org.hibernate)
This is my beans.xml:
<?xml version="1.0" encoding="UTF-8"?>
<beans xmlns="http://www.springframework.org/schema/beans"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xmlns:osgi="http://www.springframework.org/schema/osgi"
xmlns:tx="http://www.springframework.org/schema/tx"
xsi:schemaLocation="
http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans-2.5.xsd
http://www.springframework.org/schema/tx http://www.springframework.org/schema/tx/spring-tx-2.5.xsd
http://www.springframework.org/schema/osgi
">
<tx:annotation-driven transaction-manager="transactionManager"/>
<bean id="transactionManager" class="org.springframework.orm.hibernate3.HibernateTransactionManager">
<property name="sessionFactory" ref="sessionFactory"/>
<property name="dataSource" ref="dataSource"/>
</bean>
<bean id="sessionFactory" class="org.springframework.orm.hibernate3.LocalSessionFactoryBean">
<property name="dataSource" ref="dataSource"/>
<property name="mappingDirectoryLocations" ref="mappingProvider"/>
<property name="hibernateProperties" ref="propertiesProvider"/>
</bean>
<bean id="dataSource" class="org.springframework.jdbc.datasource.DriverManagerDataSource" destroy-method="close">
<property name="driverClassName" value="com.mysql.jdbc.Driver"/>
<property name="url" value="jdbc:mysql://localhost:3306/WOLOLO"/>
<property name="username" value="root"/>
<property name="password" value="123456"/>
</bean>
<bean id="mappingProvider" class="hibernate.config.HibernateMappingProvider"/>
<bean id="propertiesProvider" class="hibernate.config.HibernatePropertiesProvider"/>
<bean id="drugDao" class="drug.HibernateDrugDao">
<property name="clazz" value="model.Drug"/>
<property name="sessionFactory" ref="sessionFactory"/>
</bean>
<bean id="drugGroupDao" class="drugGroup.HibernateDrugGroupDao">
<property name="clazz" value="model.DrugGroup"/>
<property name="sessionFactory" ref="sessionFactory"/>
</bean>
<osgi:service ref="drugDao" interface="drug.DrugDao"/>
<osgi:service ref="drugGroupDao" interface="drugGroup.DrugGroupDao"/>
</beans>
This is my pom file:
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>DrugManager</groupId>
<artifactId>DrugManager</artifactId>
<version>1.0</version>
<packaging>bundle</packaging>
<dependencies>
<dependency>
<groupId>org.osgi</groupId>
<artifactId>org.osgi.core</artifactId>
<version>4.3.0</version>
</dependency>
<dependency>
<groupId>hsqldb</groupId>
<artifactId>hsqldb</artifactId>
<version>1.8.0.10</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring</artifactId>
<version>2.5.6</version>
</dependency>
<dependency>
<groupId>commons-dbcp</groupId>
<artifactId>commons-dbcp</artifactId>
<version>20030825.184428</version>
</dependency>
<dependency>
<groupId>commons-pool</groupId>
<artifactId>commons-pool</artifactId>
<version>20030825.183949</version>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate</artifactId>
<version>3.2.6.ga</version>
</dependency>
<dependency>
<groupId>mysql</groupId>
<artifactId>mysql-connector-java</artifactId>
<version>5.1.27</version>
</dependency>
</dependencies>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>2.0.2</version>
<configuration>
<source>1.6</source>
<target>1.6</target>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<version>2.4.0</version>
<extensions>true</extensions>
<configuration>
<instructions>
<Bundle-SymbolicName>DrugManagerDAO</Bundle-SymbolicName>
<Bundle-Vendor>NguyenVinhLinh</Bundle-Vendor>
<Export-Package>"drug,drugGroup,model"</Export-Package>
<Import-Package>org.hibernate</Import-Package> <!-- this line I try to insert into to fix requirement, but it does'nt work-->
</instructions>
</configuration>
</plugin>
</plugins>
</build>
<repositories>
<repository>
<id>java.net</id>
<url>http://download.java.net/maven/2/</url>
</repository>
</repositories>
</project>
In addition, there is an completed error of bundle in felix.
g! ERROR: Bundle DrugManagerDAO [190] Error starting file:DrugManager-1.0.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle DrugManagerDAO [190]: Unable to resolve 190.0: missing requirement [190.0] osgi.wiring.package; (osgi.wiring.package=org.hibernate))
org.osgi.framework.BundleException: Unresolved constraint in bundle DrugManagerDAO [190]: Unable to resolve 190.0: missing requirement [190.0] osgi.wiring.package; (osgi.wiring.package=org.hibernate)
at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
at java.lang.Thread.run(Thread.java:744)

Do you have this bundle installed in your container (Felix) as well?
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate</artifactId>
<version>3.2.6.ga</version>
</dependency>
If not install it and then see what happens when you start your bundle.

For missing requirement [Bundle-number] osgi.wiring.package,
I added it as export-package in pom.xml, as mentioned below:
<Export-Package>
package for which error is thrown
</Export-Package>
and it worked.
So if it throws the above error even after declaring it as dependency, export-package may help