Repairing wrong encoding in XML files - java

One of our providers are sometimes sending XML feeds that are tagged as UTF-8 encoded documents but includes characters that are not included in the UTF-8 charset. This causes the parser to throw an exception and stop building the DOM object when these characters are encountered:
DocumentBuilder.parse(ByteArrayInputStream bais)
throws the following exception:
org.xml.sax.SAXParseException: Invalid byte 2 of 2-byte UTF-8 sequence.
Is there a way to "capture" these problems early and avoid the exception (i.e. finding and removing those characters from the stream)? What I'm looking for is a "best effort" type of fallback for wrongly encoded documents. The correct solution would obviously be to attack the problem at the source and make sure that only correct documents are delivered, but what is a good approach when that is not possible?

if the problem truly is the wrong encoding (as opposed to a mixed encoding), you don't need to re-encode the document to parse it. just parse it as a Reader instead of an InputStream and the dom parser will ignore the header:
DocumentBuilder.parse(new InpputSource(new InputStreamReader(inputStream, "<real encoding>")));

You should manually take a look at the invalid documents and see what is the common problem to them. It's quite probable they are in fact in another encoding (most probably windows-1252), and the best solution then would be to take every document from the broken system and recode it to UTF-8 before parsing.
Another possible cause is mixed encodings (the content of some elements is in one encoding and the content of other elements is in another encoding). That would be harder to fix.
You would also need a way to know when the broken system gets fixed so you can stop using your workaround.

You should tell them to send you correct UTF-8. Failing that any solution should reencode the bad characters as valid UTF-8 then pass it to the parser. The reason for this is that if the bad characters are preserved then different programs might interpret any output different ways, which can lead to security holes.

Related

Any way to ignore error? : An invalid XML character (Unicode: 0x0) was found in the element content of the document [duplicate]

I have an XML file which gives me the following error while parsing:
An Invalid XML character(Unicode: 0x0) was found in the element content of the document error.
I can read the whole thing fine, and there are no control characters either.
But when I typed the whole thing myself instead of a file that was provided to me it worked fine.
What could be the issue. I read through some similar questions on SO and they all said that this might be a encoding issue. But can anyone elaborate on this as I could read the whole thing. And if it is encoding issue how would i know by looking at the file because it looks fine. Its readable. I delete a line and type it myself and that line is getting parsed properly.
Thanks in advance
There are two possible explanations. Either the file contains an instance of the Unicode codepoint 0x0, correctly encoded. XML does not allow this character.
Alternatively, the parser thought it saw an instance of 0x0 because it was decoding the physical bytes of the file incorrectly: that is, the encoding assumed by the XML parser is not the actual encoding of the file.
When you're dealing with this kind of question you need to be very careful about phrases like "I can read the whole file" and "it looks fine". You can't actually see the bits on the disk, you can only use some kind of viewing tool to interpret them for you, and you need to be clear about what tool you were using and how it was configured.

Why Java doesn't throw exception when decoding bytes to string failed?

If there is some exception when decoding failed, then we can try to detect the file encoding by one by one trying.
But I didn't found a way which will throw some exception like 'UnicodeDecodeError' in python, is there some specific reason?
PS: the decoding process is failed when some bytes maps to undefined char, since most of the encoding scheme left some unencoded redundancy codes.
PPS: I ask this question because I think it is a design problem. I'm not having problem about encoding. But when I want to write some code to auto detect the file encoding just like what Vim (the text editor) does, I find that this design makes things hard.
Any sequence of bytes would only make sense to you as a String if they make sense as character stream which is relevant to your use case.
What do you expect Java to do when the interpretation is not suitable to your use case?
You will see "garbage" output. But the decoding didn't technically fail. Did it? So, it can't really throw any exception.
Your specified encoding is not probably the one compatible.

What to do when a huge XML document is not well formed (Java)

I am using Java SAX parser to parse XML data sent from a third party source that is around 3 GB. I am getting an error resulting from the XML document not being well formed: The processing instruction target matching "[xX][mM][lL]" is not allowed.
As far as I understand, this is normally due to a character being somewhere it should not be.
Main problem: Cannot manually edit these files due to their very large size.
I was wondering if there was a workaround for files that are very large in size that cannot be opened and edited manually (due to their large size) and if there is a way to code it so that it would remove any problematic characters automatically.
I would think the most likely explanation is that the file contains a concatenation of several XML documents, or perhaps an embedded XML document: either way, an XML declaration that isn't at the start of the file.
A lot now depends on your relationship with the supplier of the bad data. If they sent you faulty equipment or buggy software, you would presumably complain and ask them to fix it. But if you don't have a service relationship with the third party, you either have to change supplier or do the best you can with the faulty input, which means repairing the fault yourself. In general, you can't repair faulty XML unless you know what kind of fault you are looking for, and that can be very difficult to determine if the files are large (or if the failures are very rare).
The data isn't XML, so don't try to use XML tools to process it. Use text processing tools such as sed or awk. The first step is to search the file for occurrences of <?xml and see if that gives any hints.
This error occurs, if the declaration is anywhere but the beginning of the document. The reason might be
Whitespace before the XML declaration
Any hidden character before the XML declaration
The XML declaration appears anywhere else in the document
You should start checking case #2, see here: http://www.w3.org/International/questions/qa-byte-order-mark#remove
If that doesn't help, you should remove leading whitespace from the document. You could do that by wrapping the original InputStream with another InputStream and use that to remove the whitespace.
The same can be done if you are facing case #3, but the implementation would be a bit more complex.

What html parser is able to handle encoding?

This is the beginning -- I have a file on disk which is HTML page. When I open it with regular web browser it displays as it should -- i.e. no matter what encoding is used, I see correct national characters.
Then I come -- my task is to load the same file, parse it, and print out some pieces on the screen (console) -- let's say, all <hX> texts. Of course I would like to see only correct characters, not some mambo-jumbo. The last step is changing some of text, and save the file.
So the parser has to parse and handle encoding in both ways as well. So far I am unaware of parser which is even capable of loading data correctly.
Question
What parser would you recommend?
Details
HTML page in general has the encoding given in header (in meta tag), so parser should use it. The scenario I have to look in advance and check the encoding, and then manually set the encoding in code is no-go. For example, this is taken from JSoup tutorials:
File input = new File("/tmp/input.html");
Document doc = Jsoup.parse(input, "UTF-8", "http://example.com/");
I cannot do such thing, parser has to handle encoding detection by itself.
In C# I faced similar problem with loading html. I used HTMLAgilityPack and first executed encoding detection, then using it I encoded the data stream, and after that I parsed the data. So, I did both steps explicitly, but since the library delivers both methods it is fine with me.
Such explicit separation might be even better, because it would be possible to use in case of missing header probabilistic encoding detection method.
The Jsoup API reference says for that parse method that if you provide null as the second argument (the encoding one), it'll use the http-equiv meta-tag to determine the encoding. So it looks like it already does the "parse a bit, determine encoding, re-parse with proper encoding" routine. Normally such parsers should be capable of resolving the encoding themselves using any means available to them. I know that SAX parsers in Java are supposed to use byte-order marks and the XML declaration to try and establish an encoding.
Apparently Jsoup will default to UTF-8 if no proper meta-tag is found. As they say in the documentation, this is "usually safe" since UTF-8 is compatible with a host of common encodings for the lower code points. But I take it that "usually safe" might not really be good enough in this case.
If you don't sufficiently trust Jsoup to detect the encoding, I see two alternatives:
Should you somehow be ascertained that the HTML is always in fact XHTML, then an XML parser might prove a better fit. But that would only work if the input is definitely XML compliant.
Do a heuristic encoding detection yourself by trying to use byte-order marks, parsing a portion using common encodings and finding a meta-tag, detecting the encoding by byte patterns you'd expect in header tags and finally, all else failing, use a default.

Get file's encoding in Java [duplicate]

This question already has answers here:
Closed 12 years ago.
Possible Duplicate:
Java : How to determine the correct charset encoding of a stream
User will upload a CSV file to the server, server need to check if the CSV file is encoded as UTF-8. If so need to inform user, (s)he uploaded a wrong encoding file. The problem is how to detect the file user uploaded is UTF-8 encoding? The back end is written in Java. So anyone get the suggestion?
At least in the general case, there's no way to be certain what encoding is used for a file -- the best you can do is a reasonable guess based on heuristics. You can eliminate some possibilities, but at best you're narrowing down the possibilities without confirming any one. For example, most of the ISO 8859 variants allow any byte value (or pattern of byte values), so almost any content could be encoded with almost any ISO 8859 variant (and I'm only using "almost" out of caution, not any certainty that you could eliminate any of the possibilities).
You can, however, make some reasonable guesses. For example, a file that start out with the three characters of a UTF-8 encoded BOM (EF BB BF), it's probably safe to assume it's really UTF-8. Likewise, if you see sequences like: 110xxxxx 10xxxxxx, it's a pretty fair guess that what you're seeing is encoded with UTF-8. You can eliminate the possibility that something is (correctly) UTF-8 enocded if you ever see a sequence like 110xxxxx 110xxxxx. (110xxxxx is a lead byte of a sequence, which must be followed by a non-lead byte, not another lead byte in properly encoded UTF-8).
You can try and guess the encoding using a 3rd party library, for example: http://glaforge.free.fr/wiki/index.php?wiki=GuessEncoding
Well, you can't. You could show kind of a "preview" (or should I say review?) with some sample data from the file so the user can check if it looks okay. Perhaps with the possibility of selecting different encoding options to help determine the correct one.

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