Strange problem with imports in Java Application - java

I'm building a plugin to extend the Eclipse BPEL Designer. That plugin is supposed to allow users to add meta information to certain model elements via EAnnotations. I already did the same thing for a BPMN model and it work just finde but when doing this for the BPEL designer I reveive rather strange exceptions.
The first I thing realized when trying to extend the BPEL Designer was that the designers plugins are defined in an unusual package structure. Instead of org.eclipse.bpel.xxx they have a "bin" in front of all package names. When I'm trying to import some of the designers classes I therefore have to refernce the bin path to make it work. However all the examples I was able to find just imported classes from the ordinary package structure.
Most of the time importing classes with the bin in front of the package name worked fine for me but every now and then I receive a strange error message. The message is in the form of: The type org.eclipse.bpel.xxx cannot be resolved. It is indirectly referenced from required .class files
It seems that Eclipse somehow can't find certain classes. I'm stuck at this point for over a week now and don't find any solution. From my point of view the problem has to be seen in the BPEL Designer plugins. Inside those plugins they reference classes in the form of org.eclipse.bpel.xxx but as I said when I reference those plugins their classes are inside packages with a "bin" in front of the normal package name. Could that be an explanation why certain classes can't be referenced by Eclipse and I get those strange error messages?
I'd appreciate any new ideas about that problem and hope that somwebody can give me an advice to solve that problem.
Cheers
Stefan

I already encountered in the past such troubles ...
I think there is a problem with the export/import of the BPEL Designer plugin.
How did you get this plugin ? Are you working with binary plugin or plugin imported as source in your SDk ?
Try to get again this plugin, may be an other version, or from an other source .. an update site.
I really think these "bin" packages/folders should not be here
Hope this can help ...

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Hard to tell from what you have posted. Intellij can be finicky at times especially with the Artifact jar build interface. There is a good tutorial on IntelliJ's website on how to set up the artifact. One area that may provide difficulty is pointing to the Main Class.
An issue I had in building a jar using the tool was selecting the Main Class. Ultimately I typed it in and it worked. Not sure if this is the advice that will solve your problem.
From the intellij website at: https://www.jetbrains.com/help/idea/creating-and-running-your-first-java-application.html
Note the image below.
Other potential issues could be that a dependency was corrupted, although doubtful.
Could also be the Manifest file is referencing a file that is causing the issue. Most Manifest files should be fairly simple and point to the main class. Last but not least email IntelliJ. They are good at responding and if the problem is one that intellij can solve, they will help. Unfortunately they only respond by email and sometimes can take up to a day.

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I also got this error after upgrading to IIB10.
The reason is exactly what #Alaychem described above - internal differences between "Normal" java projects and javaCompute nodes.
When a Java project is created by adding a JavaCompute node to a MsgFlow, a '.project' file is created with internal definitions of IIB. However, when a Java project is created by making 'new -> Java project' (="normal Java") - also a '.project' file is created, but this time with some less definitions in it.
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A quick way to solve the error in IIB10 without re-defining a JavaCompute node, is to add the missing definitions to the '.project' file of your Java project with the errors.
How? -> Open another Java project that you have, and compare the differences between it's '.project' file, to the '.project' file of the Java project with the errors. Just copy the missing definitions. Afterwards - refresh the Java project (F5) and rebuild the project.
Some pictures to make it clear:
First image - '.project' file of a Java project created by JavaComputeNode. In yellow are the missing definitions. Just copy them.
Second image - '.project' file of a Java project created by a "normal" Java project. Copy to it the lacked 'yellow' definitions from previous picture.
I got this error when mixing JavaCompute classes and "normal" classes.
From My answer at mqseries
"Normal" java projects and javaCompute projects are not the same, for some reason. The src/output libs in. classpath file are not the same, and probably some other differences, that cause the toolkit to treat them differently.
My project was normal java project, that a java compute class added into it later. The v8 toolkit manage with it, but v10 does not.
Moving the javaCompute class to a new javaCompue project (through double clicking new javaCompute Node) did the trick
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Update: Later I found that adding all the JARs you have, and using Ctrl-T (to view/locate types), lets you manually locate the JAR. That was the solution that Google provided so far. Is there a better way?
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ClassPathHelper, which can quickly focus on unresolved classes:
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The only limit is dependencies that are not defined in classes, e.g. in dependency injection framework configuration files.
I have found setting up a workspace exclusively for browsing the eclipse source code incredibly useful. In this manner, you can use PDE tools like the Plug-in Spy, bundle dependency analysis, browsing the documentation, etc much like you would your own plugin projects. I found this article at Vogella a very useful guide.
If you know which bundle your desired class is you can generate the transitive closure of dependencies by creating a new OSGi launch configuration, with just the single bundle selected. By hitting the Add Required button, you can see all bundles necessary to use the one you're interested in.
Edit:
From your question it wasn't clear as to the environment you want to run the compiler in. If you're interested in an embeddable Java compiler to be run outside of an OSGi environment, may I suggest Janino.
You could use a dependency analyzer like:
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