I tried all the suggestions in this related question and still get the last error
library(rJava)
.jinit(force.init = T)
.jaddClassPath(dir('~/Dropbox/R_packages/JavaJS/',full.names = TRUE)))
mol.db <- "~/Downloads/SEPULVEDA_MOLECULAR.accdb"
jfile = .jnew('java/io/File',mol.db)
dbbo <- .jnew("com/healthmarketscience/jackcess/DatabaseBuilder")
dbbo <- .jcall(dbbo,"Lcom/healthmarketscience/jackcess/DatabaseBuilder;","setFile",jfile)
db <- .jcall(dbbo,"Lcom/healthmarketscience/jackcess/Database;","open",evalArray = FALSE,evalString = FALSE) # fails!!!!
Error in .jcall(dbbo, "Lcom/healthmarketscience/jackcess/Database;", "open", :
java.lang.NoClassDefFoundError: org/apache/commons/logging/LogFactory
Here is the result of .jclassPath()
"/Users/JS/Dropbox/R_packages/library/rJava/java"
"/Users/JS/Dropbox/R_packages/JavaJS/commons-codec-1.10"
"/Users/JS/Dropbox/R_packages/JavaJS/commons-lang-2.6"
"/Users/JS/Dropbox/R_packages/JavaJS/commons-logging-1.1.3"
"/Users/JS/Dropbox/R_packages/JavaJS/hsqldb-2.2.8.jar"
"/Users/JS/Dropbox/R_packages/JavaJS/jackcess-2.1.6.jar" "/Users/JS/Dropbox/R_packages/JavaJS/log4j-1.2.7.jar"
"/Users/JS/Dropbox/R_packages/JavaJS/poi-3.9"
"/Users/JS/Dropbox/R_packages/JavaJS/ucanaccess-3.0.7.jar"
sessionInfo()
R version 3.3.2 (2016-10-31)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X El Capitan 10.11.6
locale:
1 en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
1 stats graphics grDevices utils datasets methods base
other attached packages:
1 rJava_0.9-8 tibble_1.2 datapasta_1.0.0 rlist_0.4.6.1 pipeR_0.6.1.3 janitor_0.2.1 data.table_1.10.0
loaded via a namespace (and not attached):
1 magrittr_1.5 R6_2.2.0 assertthat_0.1 tools_3.3.2 DBI_0.5-1 dplyr_0.5.0 Rcpp_0.12.8
Thanks for any help!
I've written an Android app that (among other things) records videos, which are then uploaded to an AWS server.
On the server, I need to be able to determine the rotation of the videos. My research indicates that MP4Parser should be able to help me with that, but running:
FileDataSourceImpl fileDataSource = new FileDataSourceImpl("path/to/file");
IsoFile isoFile = new IsoFile(fileDataSource);
MovieBox moov = isoFile.getMovieBox();
for (Box b : moov.getBoxes()) {
System.out.println(b);
}
on my file gives me the following output:
MovieHeaderBox[creationTime=Wed Jun 15 12:08:38 IDT 2016;modificationTime=Wed Jun 15 12:08:38 IDT 2016;timescale=1000;duration=2057;rate=1.0;volume=1.0;matrix=Rotate 0°;nextTrackId=2]
UserDataBox[]
TrackBox[]
If, within my app, I run the following Android code on the very same file:
MediaMetadataRetriever m = new MediaMetadataRetriever();
m.setDataSource("path/to/file");
String rotation = m.extractMetadata(MediaMetadataRetriever.METADATA_KEY_VIDEO_ROTATION);
System.out.println("Rotation is " + rotation);
I get:
06-15 12:07:36.741 27424-27424/... I/System.out: Rotation is 90
Why the discrepancy? And is there any pure Java (no native libraries) tool that I can use to get the same results on the server side, without the benefit of the native Android code?
Thanks,
Reuven
I recently came across sklearn2pmml and jpmml-sklearn when looking for a way to convert scikit-learn models to PMML. However, I've been hitting errors when trying to use the basic usage examples that I'm unable to figure out.
When attempting to usage example in sklearn2pmml, I've been receiving the following issue around casting a long as an int:
Exception in thread "main" java.lang.ClassCastException: java.lang.Long cannot be cast to java.lang.Integer
at numpy.core.NDArrayUtil.getShape(NDArrayUtil.java:66)
at org.jpmml.sklearn.ClassDictUtil.getShape(ClassDictUtil.java:92)
at org.jpmml.sklearn.ClassDictUtil.getShape(ClassDictUtil.java:76)
at sklearn.linear_model.BaseLinearClassifier.getCoefShape(BaseLinearClassifier.java:144)
at sklearn.linear_model.BaseLinearClassifier.getNumberOfFeatures(BaseLinearClassifier.java:56)
at sklearn.Classifier.createSchema(Classifier.java:50)
at org.jpmml.sklearn.Main.run(Main.java:104)
at org.jpmml.sklearn.Main.main(Main.java:87)
Traceback (most recent call last):
File "C:\Users\user\workspace\sklearn_pmml\test.py", line 40, in <module>
sklearn2pmml(iris_classifier, iris_mapper, "LogisticRegressionIris.pmml")
File "C:\Python27\lib\site-packages\sklearn2pmml\__init__.py", line 49, in sklearn2pmml
os.remove(dump)
WindowsError: [Error 32] The process cannot access the file because it is being used by another process: 'c:\\users\\user\\appdata\\local\\temp\\tmpmxyp2y.pkl'
Any suggestions as to what is going on here?
Usage code:
#
# Step 1: feature engineering
#
from sklearn.datasets import load_iris
from sklearn.decomposition import PCA
import pandas
import sklearn_pandas
iris = load_iris()
iris_df = pandas.concat((pandas.DataFrame(iris.data[:, :], columns = ["Sepal.Length", "Sepal.Width", "Petal.Length", "Petal.Width"]), pandas.DataFrame(iris.target, columns = ["Species"])), axis = 1)
iris_mapper = sklearn_pandas.DataFrameMapper([
(["Sepal.Length", "Sepal.Width", "Petal.Length", "Petal.Width"], PCA(n_components = 3)),
("Species", None)
])
iris = iris_mapper.fit_transform(iris_df)
#
# Step 2: training a logistic regression model
#
from sklearn.linear_model import LogisticRegressionCV
iris_X = iris[:, 0:3]
iris_y = iris[:, 3]
iris_classifier = LogisticRegressionCV()
iris_classifier.fit(iris_X, iris_y)
#
# Step 3: conversion to PMML
#
from sklearn2pmml import sklearn2pmml
sklearn2pmml(iris_classifier, iris_mapper, "LogisticRegressionIris.pmml")
EDIT 12/6:
After the new update, the same issue comes up farther down the line:
Dec 06, 2015 5:56:49 PM sklearn_pandas.DataFrameMapper updatePMML
INFO: Updating 1 target field and 3 active field(s)
Dec 06, 2015 5:56:49 PM sklearn_pandas.DataFrameMapper updatePMML
INFO: Mapping target field y to Species
Dec 06, 2015 5:56:49 PM sklearn_pandas.DataFrameMapper updatePMML
INFO: Mapping active field(s) [x1, x2, x3] to [Sepal.Length, Sepal.Width, Petal.Length, Petal.Width]
Traceback (most recent call last):
File "C:\Users\user\workspace\sklearn_pmml\test.py", line 40, in <module>
sklearn2pmml(iris_classifier, iris_mapper, "LogisticRegressionIris.pmml")
File "C:\Python27\lib\site-packages\sklearn2pmml\__init__.py", line 49, in sklearn2pmml
os.remove(dump)
WindowsError: [Error 32] The process cannot access the file because it is being used by another process: 'c:\\users\\user\\appdata\\local\\temp\\tmpqeblat.pkl'
JPMML-SkLearn expected that ndarray.shape is tuple of i4 (mapped to java.lang.Integer by the Pyrolite library). However, in this case it was a tuple of i8 (mapped to java.lang.Long). Hence the cast exception.
This issue has been addressed in JPMML-SkLearn commit f7c16ac2fb.
If you should encounter another exception (data translation between platforms could be tricky), then you should also open a JPMML-SkLearn issue about it.
Goal: check java's version on a machine (I can get this from java -version). Compare it with latest available from java website
I would like to know if there is any way I can check for latest Java releases assuming that I have JRE/JDK installed on a machine.
If I can do this through Java itself, my solution would become platform independent. I could use java.net.URL class to send a request to Java website and get the HTML, however the response would be dynamic as Oracle can change their website and styles and possibly will have maintenance issues in long run.
I have looked at javatester.org, but I would not want it through an applet but through command line (which I can add to a script).
Through javacpl.exe, I can schedule periodic checks, but I would like to do it on demand.
The answer is actually quite simple. http://java.com/en/download/testjava.jsp issues a request to http://java.com/applet/JreCurrentVersion2.txt. That file currently contains a single version number: '1.7.0_11'...which is the latest and greatest, indeed.
Java code example
try (BufferedReader br = new BufferedReader(new InputStreamReader(new URL(
"http://java.com/applet/JreCurrentVersion2.txt").openStream()))) {
String fullVersion = br.readLine();
String version = fullVersion.split("_")[0];
String revision = fullVersion.split("_")[1];
System.out.println("Version " + version + " revision " + revision);
} catch (IOException e) {
// handle properly
}
Update 2014-03-20
Eventhough Java 8 was recently released http://java.com/applet/JreCurrentVersion2.txt currently still returns 1.7.0_51.
Update 2016-07-13
Looks like we need to come back to this every few months... Currently you need to scan http://java.com/en/download/installed8.jsp for a JavaScript variable latest8Version. So, you could run curl -s https://java.com/en/download/installed8.jsp | grep latest8Version.
Update 2018-08-19
http://javadl-esd-secure.oracle.com/update/baseline.version is another hot spot as mentioned in some other answer.
An URL very similar to the now defunct "JreCurrentVersion2.txt":
http://javadl-esd-secure.oracle.com/update/baseline.version
The contents of the link look like this:
1.8.0_111
1.7.0_121
1.6.0_131
1.5.0_99
1.4.2_43
You can easily parse the contents to find the latest JRE versions.
UPDATE: I don't recommend this method because this JRE is the one that has the Ask.com toolbar. You're better off downloading it yourself and distributing it yourself.
The jusched.exe program accesses the following URL to find out what versions are available. I think it's less likely to change because jusched is installed on millions of computers.
https://javadl-esd-secure.oracle.com/update/1.7.0/map-m-1.7.0.xml
Here is a snippet of what it returns for me:
<?xml version="1.0" encoding="ISO-8859-1" standalone="yes" ?>
<java-update-map version="1.0">
<mapping>
<version>1.7.0_17</version>
<url>https://javadl-esd-secure.oracle.com/update/1.7.0/au-descriptor-1.7.0_25-b17.xml</url>
</mapping>
<mapping>
<version>1.7.0_21</version>
<url>https://javadl-esd-secure.oracle.com/update/1.7.0/au-descriptor-1.7.0_25-b17.xml</url>
</mapping>
</java-update-map>
To get the actual version that it is pointing to you have to fetch the above URL. Here is another snippet of what this XML looks like:
xml version="1.0" encoding="UTF-8" standalone="yes"?>
<!-- XML file to be staged anywhere, and pointed to by map.xml file -->
<java-update>
<information version="1.0" xml:lang="en">
<caption>Java Update - Update Available</caption>
<title>Java Update Available</title>
<description>Java 7 Update 25 is ready to install. Installing Java 7 Update 25 might uninstall the latest Java 6 from your system. Click the Install button to update Java now. If you wish to update Java later, click the Later button.</description>
<moreinfo>http://java.com/moreinfolink</moreinfo>
<AlertTitle>Java Update Available</AlertTitle>
<AlertText>A new version of Java is ready to be installed.</AlertText>
<moreinfotxt>More information...</moreinfotxt>
<url>http://javadl.sun.com/webapps/download/GetFile/1.7.0_25-b17/windows-i586/jre-7u25-windows-i586-iftw.exe</url>
<version>1.7.0_25-b17</version>
<post-status>https://nometrics.java.com</post-status>
<cntry-lookup>http://rps-svcs.sun.com/services/countrylookup</cntry-lookup>
<predownload></predownload>
<options>/installmethod=jau FAMILYUPGRADE=1 SPWEB=http://javadl-esd.sun.com/update/1.7.0/sp-1.7.0_25-b17</options>
<urlinfo>24595ec7f861bc67e572f1e4ad3992441335e1a7</urlinfo>
</information>
</java-update>
The version tag contains the full version number.
You could parse the Java SE Downloads page to extract the Java versions.
That way, you get the version of both JDK6 and JDK7, which allows you to test your particular JDK (6 or 7) against the latest Oracle one.
(As opposed to the Free Java Download page, which only lists the JDK7)
Her is a crude script in Go, which you can compile on Windows, Unix, MacOs into a single independent executable, and use within a command line or a script:
package main
import (
"bytes"
"encoding/xml"
"fmt"
"io/ioutil"
"net/http"
"os/exec"
"regexp"
)
type Jdk struct {
Url string
Ver string
update string
}
func main() {
resp, err := http.Get("http://www.oracle.com/technetwork/java/javase/downloads/index.html")
if err != nil {
fmt.Printf("Error on http Get: %v\n", err)
return
}
bodyb, err := ioutil.ReadAll(resp.Body)
if err != nil {
fmt.Printf("QueriesForOwner: error in ReadAll: %v\n", err)
return
}
br := bytes.NewBuffer(bodyb)
jdkre, err := regexp.Compile(`h3[^\r\n]+(/technetwork/java/javase/downloads/(jdk(?:6|7)(?:u(\d+))?)-downloads-\d+\.html)`)
if err != nil {
fmt.Printf("extract: error in regexp compilation: %v\n", err)
return
}
jdks := jdkre.FindAllSubmatch(br.Bytes(), -1)
jdk7 := Jdk{string(jdks[0][4]), string(jdks[0][5]), string(jdks[0][6])}
jdk6 := Jdk{string(jdks[1][7]), string(jdks[1][8]), string(jdks[1][9])}
fmt.Printf("Jdk7: %v\nJdk6: %v\n", jdk7, jdk6)
jver, err := exec.Command("java", "-version").CombinedOutput()
if err != nil {
fmt.Printf("*ExitError from java -version:", err)
return
}
fmt.Println("JVer: '", string(jver), "'")
jverre, err := regexp.Compile(`1.(\d).\d(?:_(\d+))"`)
jvers := jverre.FindSubmatch(jver)
jj := string(jvers[0])
jv := string(jvers[1])
ju := string(jvers[2])
jdk := jdk6
if jv == "7" {
jdk = jdk7
}
if jdk.update != ju {
fmt.Println("Local JDK *NOT* up-to-date: you have ", jj, ", Oracle has ", jdk.Ver)
} else {
fmt.Println("Local JDK *up-to-date*: you have ", jj, ", equals to Oracle, which has", jdk.Ver)
}
}
Again, this is a crude script, oriented toward JDK, and you would need to adapt it to your specific need, making its output and exit status match what you need for your script.
On my (PC) workstation, it returns:
Jdk7: {/technetwork/java/javase/downloads/jdk7u9-downloads-1859576.html jdk7u9 9}
Jdk6: {/technetwork/java/javase/downloads/jdk6u37-downloads-1859587.html jdk6u37 37}
JVer: ' java version "1.6.0_31"
Java(TM) SE Runtime Environment (build 1.6.0_31-b05)
Java HotSpot(TM) Client VM (build 20.6-b01, mixed mode, sharing)
'
Local JDK *NOT* up-to-date: you have 1.6.0_31" , Oracle has jdk6u37
I don't know what information you are exactly looking for, but you can get some version information using
System.getProperty("java.version");
If this is not what you're looking for, check the other available properties here:
http://docs.oracle.com/javase/6/docs/api/java/lang/System.html#getProperties()
As for the latest available version, I guess you'd have to parse this site manually:
http://java.com/en/download/index.jsp
The latest version is on there, currently it's
Version 7 Update 9
You write that this is not what you want because "Oracle can change their website and styles". However, you want to find out the latest version of Java by accessing their service (website in this case). As long as you're not paying for this, they have no obligation to you, and can change the service whenever they want without your consent. And even when you're a paying customer, the best you can hope for is that they will inform you of upcoming changes, and your maintenance issues will remain.
Remember, it's THEIR service you want to use.
I have solved a similar issue some time ago with this groovy script (disclaimer: is somehow a "toy" script):
#Grapes([
#Grab(group='org.ccil.cowan.tagsoup', module='tagsoup', version='1.2.1')
])
def slurper = new XmlSlurper(new org.ccil.cowan.tagsoup.Parser())
def url = new URL("http://www.java.com/download/manual.jsp")
def html
url.withReader { reader ->
html = slurper.parse(reader)
}
def lastJava = html.body.div.div.div.strong.text()
println "Last available java version: ${lastJava}"
println "Currently installed java version: ${System.properties["java.version"]}"
It yields something like:
Last available java version:
Version 7 Update 9
Currently installed java version: 1.7.0_07
If you want to avoid maintenance issues due to changes to the page structure, maybe a better option is to search for a line containing "Version x Update y".
To get all system variables
Properties properties = System.getProperties();
System.out.println(properties);
Sample output, this might be different in your system depending on your OS and Java JDK/JRE version.
{
java.runtime.name = Java(TM) SE Runtime Environment,
sun.boot.library.path = C:\Program Files\Java\jdk1.8.0_31\jre\bin,
java.vm.version = 25.31-b07,
java.vm.vendor = Oracle Corporation,
java.vendor.url = http://java.oracle.com/,
path.separator = ;,
idea.launcher.port = 7534,
java.vm.name = Java HotSpot(TM) 64-Bit Server VM,
file.encoding.pkg = sun.io,
user.country = NP,
user.script = ,
sun.java.launcher = SUN_STANDARD,
sun.os.patch.level = ,
java.vm.specification.name = Java Virtual Machine Specification,
user.dir = C:\Users\...\roid,
java.runtime.version = 1.8.0_31-b13,
java.awt.graphicsenv = sun.awt.Win32GraphicsEnvironment,
java.endorsed.dirs = C:\Program Files\Java\jdk1.8.0_31\jre\lib\endorsed,
os.arch = amd64,
java.io.tmpdir = C:\Windows\TEMP\,
line.separator = ,
java.vm.specification.vendor = Oracle Corporation,
user.variant = ,
os.name = Windows 8.1,
sun.jnu.encoding = Cp1252,
java.library.path = C:\Program...roid,
java.specification.name = Java Platform API Specification,
java.class.version = 52.0,
sun.management.compiler = HotSpot 64-Bit Tiered Compilers,
os.version = 6.3,
user.home = C:\Users\Xxx,
user.timezone = Asia/Kathmandu,
java.awt.printerjob = sun.awt.windows.WPrinterJob,
file.encoding = UTF-8,
idea.launcher.bin.path = C:\Program Files (x86)\xxx\bin,
java.specification.version = 1.8,
java.class.path = C:\Program Files\Java\jdk1.8.0_31\jre\lib\charsets.jar;...,
user.name = Xxx,
java.vm.specification.version = 1.8,
sun.java.command = com.xxxx.ameras,
java.home = C:\Program Files\Java\jdk1.8.0_31\jre,
sun.arch.data.model = 64,
user.language = en,
java.specification.vendor = Oracle Corporation,
awt.toolkit = sun.awt.windows.WToolkit,
java.vm.info = mixed mode,
java.version = 1.8.0_31,
java.ext.dirs = C:\Program Files\Java\jdk1.8.0_31\jre\lib\ext;...,
java.vendor = Oracle Corporation,
file.separator = \,
java.vendor.url.bug = http://bugreport.sun.com/bugreport/,
sun.io.unicode.encoding = UnicodeLittle,
sun.cpu.endian = little,
sun.desktop = windows,
sun.cpu.isalist = amd64
}
Retrive only specific variable
String javaVersion = System.getProperty("java.version");
System.out.println(javaVersion);
Output
1.8.0_31
#MarcelStör's solution no longer works - the version in the file is 1.8.0_51, while the actual latest version is 1.8.0_91/92. If you go to the Java test page in Firefox or Chrome and open the development console you can get the variable latest8Version which currently is 1.8.0_91. This could be wrapped in a Selenium/Firefox solution, but is an incredibly hacky way of getting this information.
System.getProperty("java.vm.specification.version");
System.getProperty("java.version");