I have the below xml, Updated added "symptoms"
<EBF>
<EBFINFO>
<EBFNUM>EBF262323</EBFNUM>
<RELEASEDATETIME>May 06, 2011</RELEASEDATETIME>
<SYMPTOMS>
<br> INFA252994 - 910 : While running concurrent session Workflow manager hangs and workflow monitor does not respond</br>
<br> INFA262323 - 910 : pmcmd, pmdtm and all LM clients on Windows fail to connect to IS when IPv6 is installed but all IPv6 interfaces are disabled</br>
</SYMPTOMS>
<FILES>
<FILE>
<PATH>H:\EBF262323\EBF262323_Client_Installer_win32_x86\EBFs\clients\PmClient\client\bin\ACE.dll_bak</PATH>
<CHECKSUM>303966974</CHECKSUM>
<AFFECTEDFILES>
<CHECKSUM>3461283269</CHECKSUM>
<PATH>C:\clients\PmClient\CommandLineUtilities\PC\server\bin\ACE.dll</PATH>
<PATH>C:\clients\PmClient\client\bin\ACE.dll</PATH>
</AFFECTEDFILES>
</FILE>
</FILES>
<NOTES>
</NOTES>
</EBFINFO>
</EBF>
Note: In the above xml ebf\enfinfo\files\file\affectedfiles\path and ebf\enfinfo\files\file can be one or more
which I am parsing and generating another xml out of it
def records = new XmlParser().parseText(rs)
csm.ebfHistory(){
records.EBFINFO.each{
ebfHistory_info(num:it.EBFNUM.text(),
release_date_time:it.RELEASEDATETIME.text()
){
it.FILES.FILE.each{ //says Exception in thread "main" java.lang.NullPointerException: Cannot get property 'FILES' on null object
ebfHistory_fileinfo(file_path:it.PATH.text(),
file_checksum:it.CHECKSUM.text()
){
ebfHistory_fileinfo_affectedfiles(
afile_checksum:it.CHECKSUM.text(),
afile_path:it.PATH.text()
)
}
}
}
}
}
something like below
<ebfHistory>
<ebfHistory_info num="EBF262323",release_date_time="May 06, 2011">
<ebfHistory_fileinfo file_checksum="303966974">
<ebfHistory_fileinfo_affectedfiles afile_checksum="3461283269">
<path>C:\clients\PmClient\CommandLineUtilities\PC\server\bin\ACE.dll</path>
<path>C:\clients\PmClient\client\bin\ACE.dll</path>
</ebfHistory_fileinfo_affectedfiles>
</ebfHistory_fileinfo>
</ebfHistory_info>
</ebfHistory>
but instead I get Exception in thread "main" java.lang.NullPointerException: Cannot get property 'FILES' on null object where am i going wrong? Please help somebody. Thanks
Updated code (working)
def records = new XmlParser().parseText(rs)
csm.ebfHistory(){
records.EBFINFO.each{ ebfinfo ->
ebfHistory_info(num:ebfinfo.EBFNUM.text(),
release_date_time:ebfinfo.RELEASEDATETIME.text())
{
ebfinfo.SYMPTOMS.br.each{
ebfHistory_symptom(name:it.text())
}
}
}
ebfHistory_dump(rs){
"${rs}"
}
}
The it no longer refers to each EBFINFO, because you are in another closure--the ebfHistory_info closure.
Instead, explicitly name the EBFINFO object:
records.EBFINFO.each { ebfinfo -> // <-- Give it a name
ebfHistory_info(num:it.EBFNUM.text(),
release_date_time:it.RELEASEDATETIME.text()) {
ebfinfo.FILES.FILE.each { // <-- Use the name here
Same thing in the ebfHistory_fileinfo_affectedfiles parameters.
Related
I have written a method that suppose to read the key value but this gives an error while running via jenkinsfile
here's the code (ScanMethods.groovy):
package api.Scan
public static ScanPipeline(String VERACODE_API_ID, String VERACODE_API_SECRET, String failOnSeverity, String BaseFile) {
Map custom_block = [
VERACODE_API_ID: VERACODE_API_ID,
VERACODE_API_SECRET: VERACODE_API_SECRET,
failOnSeverity: failOnSeverity,
BaseFile: "results.json"
]
Scan.scanload(custom_block)
}
Jenkinsfile
pipeline {
agent any
options {
buildDiscarder logRotator(artifactDaysToKeepStr: '', artifactNumToKeepStr: '', daysToKeepStr: '', numToKeepStr: '5')
}
stages {
stage('Veracode Pipeline') {
agent { label "default" }
steps {
script {
ScanMethods.scan-veracode-pipeline(VERACODE_API_ID, VERACODE_API_SECRET, failOnSeverity, BaseFile)
}
}}
}
}
Error i have recieved:
org.codehaus.groovy.control.MultipleCompilationErrorsException: startup failed:
/var/jenkins_home/jobs/Test_pipelines/jobs/ankur-test/jobs/pipeline-scan-cit-cdw-jenkinsfile/branches/feature-T23D-4021.247156/builds/19/libs/ASTLib/src/api/ScanMethods.groovy: 11: Apparent variable 'Scan' was found in a static scope but doesn't refer to a local variable, static field or class. Possible causes:
You attempted to reference a variable in the binding or an instance variable from a static context.
You misspelled a classname or statically imported field. Please check the spelling.
You attempted to use a method 'Scan' but left out brackets in a place not allowed by the grammar.
# line 11, column 5.
Scan.scanload(custom_block)
^
1 error
at org.codehaus.groovy.control.ErrorCollector.failIfErrors(ErrorCollector.java:310)
at org.codehaus.groovy.control.CompilationUnit.applyToPrimaryClassNodes(CompilationUnit.java:1085)
at org.codehaus.groovy.control.CompilationUnit.doPhaseOperation(CompilationUnit.java:603)
at org.codehaus.groovy.control.CompilationUnit.processPhaseOperations(CompilationUnit.java:581)
at org.codehaus.groovy.control.CompilationUnit.compile(CompilationUnit.java:558)
at groovy.lang.GroovyClassLoader.doParseClass(GroovyClassLoader.java:298)
at groovy.lang.GroovyClassLoader.parseClass(GroovyClassLoader.java:268)
at groovy.lang.GroovyClassLoader.parseClass(GroovyClassLoader.java:254)
at groovy.lang.GroovyClassLoader.recompile(GroovyClassLoader.java:761)
at groovy.lang.GroovyClassLoader.loadClass(GroovyClassLoader.java:718)
at groovy.lang.GroovyClassLoader.loadClass(GroovyClassLoader.java:787)
at java.lang.ClassLoader.loadClass(ClassLoader.java:405)
at org.jenkinsci.plugins.workflow.cps.CpsGroovyShell$TimingLoader.loadClass(CpsGroovyShell.java:170)
at java.lang.ClassLoader.loadClass(ClassLoader.java:405)
at groovy.lang.GroovyClassLoader.loadClass(GroovyClassLoader.java:677)
at groovy.lang.GroovyClassLoader.loadClass(GroovyClassLoader.java:545)
at org.codehaus.groovy.control.ClassNodeResolver.tryAsLoaderClassOrScript(ClassNodeResolver.java:185)
Caused: BUG! exception in phase 'semantic analysis' in source unit 'WorkflowScript' The lookup for api.ScanMethods caused a failed compilaton. There should not have been any compilation from this call.
Please help in how to resolve this error in order to read the values
I have one problem with the open source estatio (that is built based on apache isis)
I've export data base schema first in DDL file. After that I have imported the DDL file in PostgresSQL 9.5. The application can be started. And some of fixture can be executed. The problem I have in "Estatio Demo Fixture". The application seems to import few fixtures until the application try to import org.estatio.fixture.financial.BankAccountForAcmeNl.
Following exception occurs:
Stack trace:
org.apache.wicket.WicketRuntimeException
Method onRequest of interface org.apache.wicket.behavior.IBehaviorListener targeted at org.apache.wicket.ajax.markup.html.form.AjaxButton$1#4c421e92 on component [IndicatingAjaxButton [Component id = okButton]] threw an exception
org.apache.wicket.RequestListenerInterface#internalInvoke(RequestListenerInterface.java:268)
org.apache.wicket.RequestListenerInterface#invoke(RequestListenerInterface.java:241)
org.apache.wicket.core.request.handler.ListenerInterfaceRequestHandler#invokeListener(ListenerInterfaceRequestHandler.java:248)
org.apache.wicket.core.request.handler.ListenerInterfaceRequestHandler#respond(ListenerInterfaceRequestHandler.java:234)
org.apache.wicket.request.cycle.RequestCycle$HandlerExecutor#respond(RequestCycle.java:895)
org.apache.wicket.request.RequestHandlerStack#execute(RequestHandlerStack.java:64)
org.apache.wicket.request.cycle.RequestCycle#execute(RequestCycle.java:265)
org.apache.wicket.request.cycle.RequestCycle#processRequest(RequestCycle.java:222)
org.apache.wicket.request.cycle.RequestCycle#processRequestAndDetach(RequestCycle.java:293)
org.apache.wicket.protocol.http.WicketFilter#processRequestCycle(WicketFilter.java:261)
org.apache.wicket.protocol.http.WicketFilter#processRequest(WicketFilter.java:203)
org.apache.wicket.protocol.http.WicketFilter#doFilter(WicketFilter.java:284)
org.apache.catalina.core.ApplicationFilterChain#internalDoFilter(ApplicationFilterChain.java:192)
org.apache.catalina.core.ApplicationFilterChain#doFilter(ApplicationFilterChain.java:165)
org.togglz.servlet.TogglzFilter#doFilter(TogglzFilter.java:100)
org.apache.catalina.core.ApplicationFilterChain#internalDoFilter(ApplicationFilterChain.java:192)
org.apache.catalina.core.ApplicationFilterChain#doFilter(ApplicationFilterChain.java:165)
org.apache.shiro.web.servlet.AbstractShiroFilter#executeChain(AbstractShiroFilter.java:449)
org.apache.shiro.web.servlet.AbstractShiroFilter$1#call(AbstractShiroFilter.java:365)
org.apache.shiro.subject.support.SubjectCallable#doCall(SubjectCallable.java:90)
org.apache.shiro.subject.support.SubjectCallable#call(SubjectCallable.java:83)
org.apache.shiro.subject.support.DelegatingSubject#execute(DelegatingSubject.java:383)
org.apache.shiro.web.servlet.AbstractShiroFilter#doFilterInternal(AbstractShiroFilter.java:362)
org.apache.shiro.web.servlet.OncePerRequestFilter#doFilter(OncePerRequestFilter.java:125)
org.apache.catalina.core.ApplicationFilterChain#internalDoFilter(ApplicationFilterChain.java:192)
org.apache.catalina.core.ApplicationFilterChain#doFilter(ApplicationFilterChain.java:165)
org.apache.catalina.core.StandardWrapperValve#invoke(StandardWrapperValve.java:198)
org.apache.catalina.core.StandardContextValve#invoke(StandardContextValve.java:96)
org.apache.catalina.authenticator.AuthenticatorBase#invoke(AuthenticatorBase.java:474)
org.apache.catalina.core.StandardHostValve#invoke(StandardHostValve.java:140)
org.apache.catalina.valves.ErrorReportValve#invoke(ErrorReportValve.java:79)
org.apache.catalina.valves.AbstractAccessLogValve#invoke(AbstractAccessLogValve.java:624)
org.apache.catalina.core.StandardEngineValve#invoke(StandardEngineValve.java:87)
org.apache.catalina.connector.CoyoteAdapter#service(CoyoteAdapter.java:349)
org.apache.coyote.http11.Http11Processor#service(Http11Processor.java:783)
org.apache.coyote.AbstractProcessorLight#process(AbstractProcessorLight.java:66)
org.apache.coyote.AbstractProtocol$ConnectionHandler#process(AbstractProtocol.java:798)
org.apache.tomcat.util.net.NioEndpoint$SocketProcessor#doRun(NioEndpoint.java:1434)
org.apache.tomcat.util.net.SocketProcessorBase#run(SocketProcessorBase.java:49)
java.util.concurrent.ThreadPoolExecutor#runWorker(ThreadPoolExecutor.java:1142)
java.util.concurrent.ThreadPoolExecutor$Worker#run(ThreadPoolExecutor.java:617)
org.apache.tomcat.util.threads.TaskThread$WrappingRunnable#run(TaskThread.java:61)
java.lang.Thread#run(Thread.java:745)
Caused by:
java.lang.reflect.InvocationTargetException
sun.reflect.NativeMethodAccessorImpl#invoke0(NativeMethodAccessorImpl.java:-2)
sun.reflect.NativeMethodAccessorImpl#invoke(NativeMethodAccessorImpl.java:62)
sun.reflect.DelegatingMethodAccessorImpl#invoke(DelegatingMethodAccessorImpl.java:43)
java.lang.reflect.Method#invoke(Method.java:498)
org.apache.wicket.RequestListenerInterface#internalInvoke(RequestListenerInterface.java:258)
org.apache.wicket.RequestListenerInterface#invoke(RequestListenerInterface.java:241)
org.apache.wicket.core.request.handler.ListenerInterfaceRequestHandler#invokeListener(ListenerInterfaceRequestHandler.java:248)
org.apache.wicket.core.request.handler.ListenerInterfaceRequestHandler#respond(ListenerInterfaceRequestHandler.java:234)
org.apache.wicket.request.cycle.RequestCycle$HandlerExecutor#respond(RequestCycle.java:895)
org.apache.wicket.request.RequestHandlerStack#execute(RequestHandlerStack.java:64)
org.apache.wicket.request.cycle.RequestCycle#execute(RequestCycle.java:265)
org.apache.wicket.request.cycle.RequestCycle#processRequest(RequestCycle.java:222)
org.apache.wicket.request.cycle.RequestCycle#processRequestAndDetach(RequestCycle.java:293)
org.apache.wicket.protocol.http.WicketFilter#processRequestCycle(WicketFilter.java:261)
org.apache.wicket.protocol.http.WicketFilter#processRequest(WicketFilter.java:203)
org.apache.wicket.protocol.http.WicketFilter#doFilter(WicketFilter.java:284)
org.apache.catalina.core.ApplicationFilterChain#internalDoFilter(ApplicationFilterChain.java:192)
org.apache.catalina.core.ApplicationFilterChain#doFilter(ApplicationFilterChain.java:165)
org.togglz.servlet.TogglzFilter#doFilter(TogglzFilter.java:100)
org.apache.catalina.core.ApplicationFilterChain#internalDoFilter(ApplicationFilterChain.java:192)
org.apache.catalina.core.ApplicationFilterChain#doFilter(ApplicationFilterChain.java:165)
org.apache.shiro.web.servlet.AbstractShiroFilter#executeChain(AbstractShiroFilter.java:449)
org.apache.shiro.web.servlet.AbstractShiroFilter$1#call(AbstractShiroFilter.java:365)
org.apache.shiro.subject.support.SubjectCallable#doCall(SubjectCallable.java:90)
org.apache.shiro.subject.support.SubjectCallable#call(SubjectCallable.java:83)
org.apache.shiro.subject.support.DelegatingSubject#execute(DelegatingSubject.java:383)
org.apache.shiro.web.servlet.AbstractShiroFilter#doFilterInternal(AbstractShiroFilter.java:362)
org.apache.shiro.web.servlet.OncePerRequestFilter#doFilter(OncePerRequestFilter.java:125)
org.apache.catalina.core.ApplicationFilterChain#internalDoFilter(ApplicationFilterChain.java:192)
org.apache.catalina.core.ApplicationFilterChain#doFilter(ApplicationFilterChain.java:165)
org.apache.catalina.core.StandardWrapperValve#invoke(StandardWrapperValve.java:198)
org.apache.catalina.core.StandardContextValve#invoke(StandardContextValve.java:96)
org.apache.catalina.authenticator.AuthenticatorBase#invoke(AuthenticatorBase.java:474)
org.apache.catalina.core.StandardHostValve#invoke(StandardHostValve.java:140)
org.apache.catalina.valves.ErrorReportValve#invoke(ErrorReportValve.java:79)
org.apache.catalina.valves.AbstractAccessLogValve#invoke(AbstractAccessLogValve.java:624)
org.apache.catalina.core.StandardEngineValve#invoke(StandardEngineValve.java:87)
org.apache.catalina.connector.CoyoteAdapter#service(CoyoteAdapter.java:349)
org.apache.coyote.http11.Http11Processor#service(Http11Processor.java:783)
org.apache.coyote.AbstractProcessorLight#process(AbstractProcessorLight.java:66)
org.apache.coyote.AbstractProtocol$ConnectionHandler#process(AbstractProtocol.java:798)
org.apache.tomcat.util.net.NioEndpoint$SocketProcessor#doRun(NioEndpoint.java:1434)
org.apache.tomcat.util.net.SocketProcessorBase#run(SocketProcessorBase.java:49)
java.util.concurrent.ThreadPoolExecutor#runWorker(ThreadPoolExecutor.java:1142)
java.util.concurrent.ThreadPoolExecutor$Worker#run(ThreadPoolExecutor.java:617)
org.apache.tomcat.util.threads.TaskThread$WrappingRunnable#run(TaskThread.java:61)
java.lang.Thread#run(Thread.java:745)
Caused by:
java.lang.NumberFormatException
For input string: "nextvalIncodeCommunications.CommunicationChannel_id_seq::regclass"
java.lang.NumberFormatException#forInputString(NumberFormatException.java:65)
java.lang.Long#parseLong(Long.java:589)
java.lang.Long#valueOf(Long.java:803)
org.datanucleus.store.rdbms.mapping.datastore.BigIntRDBMSMapping#setObject(BigIntRDBMSMapping.java:187)
org.datanucleus.store.rdbms.mapping.java.DatastoreIdMapping#setObject(DatastoreIdMapping.java:53)
org.datanucleus.store.rdbms.mapping.java.PersistableMapping#setObjectAsNull(PersistableMapping.java:346)
org.datanucleus.store.rdbms.mapping.java.PersistableMapping#setObject(PersistableMapping.java:317)
org.datanucleus.store.rdbms.mapping.java.PersistableMapping#setObject(PersistableMapping.java:300)
org.datanucleus.store.rdbms.sql.SQLStatementHelper#applyParametersToStatement(SQLStatementHelper.java:228)
org.datanucleus.store.rdbms.query.JDOQLQuery#performExecute(JDOQLQuery.java:609)
org.datanucleus.store.query.Query#executeQuery(Query.java:1855)
org.datanucleus.store.query.Query#executeWithMap(Query.java:1762)
org.datanucleus.api.jdo.JDOQuery#executeWithMap(JDOQuery.java:346)
org.apache.isis.objectstore.jdo.datanucleus.persistence.queries.PersistenceQueryFindUsingApplibQueryProcessor#getResults(PersistenceQueryFindUsingApplibQueryProcessor.java:117)
org.apache.isis.objectstore.jdo.datanucleus.persistence.queries.PersistenceQueryFindUsingApplibQueryProcessor#process(PersistenceQueryFindUsingApplibQueryProcessor.java:57)
org.apache.isis.objectstore.jdo.datanucleus.persistence.queries.PersistenceQueryFindUsingApplibQueryProcessor#process(PersistenceQueryFindUsingApplibQueryProcessor.java:41)
org.apache.isis.core.runtime.system.persistence.PersistenceSession#processPersistenceQuery(PersistenceSession.java:606)
org.apache.isis.core.runtime.system.persistence.PersistenceSession#access$000(PersistenceSession.java:147)
org.apache.isis.core.runtime.system.persistence.PersistenceSession$1#execute(PersistenceSession.java:567)
org.apache.isis.core.runtime.system.persistence.PersistenceSession$1#execute(PersistenceSession.java:564)
org.apache.isis.core.runtime.system.transaction.IsisTransactionManager#executeWithinTransaction(IsisTransactionManager.java:188)
org.apache.isis.core.runtime.system.transaction.IsisTransactionManager#executeWithinTransaction(IsisTransactionManager.java:178)
org.apache.isis.core.runtime.system.persistence.PersistenceSession#findInstancesInTransaction(PersistenceSession.java:563)
org.apache.isis.core.runtime.system.persistence.PersistenceSession#firstMatchingQuery(PersistenceSession.java:535)
org.apache.isis.core.runtime.services.persistsession.PersistenceSessionServiceInternalDefault#firstMatchingQuery(PersistenceSessionServiceInternalDefault.java:176)
org.apache.isis.core.metamodel.services.container.DomainObjectContainerDefault#firstMatch(DomainObjectContainerDefault.java:534)
org.incode.module.communications.dom.impl.commchannel.CommunicationChannelOwnerLinkRepository#findByCommunicationChannel(CommunicationChannelOwnerLinkRepository.java:65)
org.incode.module.communications.dom.impl.commchannel.CommunicationChannel#getOwnerLink(CommunicationChannel.java:253)
org.incode.module.communications.dom.impl.commchannel.CommunicationChannel#removeOwnerLink(CommunicationChannel.java:246)
org.incode.module.communications.dom.impl.commchannel.CommunicationChannel#setOwner(CommunicationChannel.java:241)
org.incode.module.communications.dom.impl.commchannel.CommunicationChannelRepository#newPostal(CommunicationChannelRepository.java:73)
org.estatio.fixture.party.OrganisationAbstract#createCommunicationChannels(OrganisationAbstract.java:90)
org.estatio.fixture.party.OrganisationAbstract#createOrganisation(OrganisationAbstract.java:69)
org.estatio.fixture.party.OrganisationForAcmeNl#execute(OrganisationForAcmeNl.java:30)
org.apache.isis.applib.fixturescripts.FixtureScript$ExecutionContext#executeChildIfNotAlready(FixtureScript.java:598)
org.apache.isis.applib.fixturescripts.FixtureScript$ExecutionContext#executeChildT(FixtureScript.java:576)
org.apache.isis.applib.fixturescripts.FixtureScript$ExecutionContext#executeChildT(FixtureScript.java:544)
org.apache.isis.applib.fixturescripts.FixtureScript$ExecutionContext#executeChild(FixtureScript.java:532)
org.estatio.fixture.financial.BankAccountForAcmeNl#execute(BankAccountForAcmeNl.java:42)
org.apache.isis.applib.fixturescripts.FixtureScript$ExecutionContext#executeChildIfNotAlready(FixtureScript.java:598)
org.apache.isis.applib.fixturescripts.FixtureScript$ExecutionContext#executeChildT(FixtureScript.java:576)
org.apache.isis.applib.fixturescripts.FixtureScript$ExecutionContext#executeChildT(FixtureScript.java:544)
org.apache.isis.applib.fixturescripts.FixtureScript$ExecutionContext#executeChild(FixtureScript.java:532)
org.estatio.fixturescripts.EstatioDemoFixture#execute(EstatioDemoFixture.java:72)
org.apache.isis.applib.fixturescripts.FixtureScript$ExecutionContext#executeChildIfNotAlready(FixtureScript.java:598)
org.apache.isis.applib.fixturescripts.FixtureScript$ExecutionContext#access$200(FixtureScript.java:253)
org.apache.isis.applib.fixturescripts.FixtureScript#run(FixtureScript.java:828)
org.apache.isis.applib.fixturescripts.FixtureScripts#runFixtureScript(FixtureScripts.java:391)
org.apache.isis.applib.services.fixturespec.FixtureScriptsDefault#runFixtureScript(FixtureScriptsDefault.java:108)
sun.reflect.NativeMethodAccessorImpl#invoke0(NativeMethodAccessorImpl.java:-2)
sun.reflect.NativeMethodAccessorImpl#invoke(NativeMethodAccessorImpl.java:62)
sun.reflect.DelegatingMethodAccessorImpl#invoke(DelegatingMethodAccessorImpl.java:43)
java.lang.reflect.Method#invoke(Method.java:498)
org.apache.isis.core.metamodel.facets.actions.action.invocation.ActionInvocationFacetForDomainEventAbstract#invokeMethodElseFromCache(ActionInvocationFacetForDomainEventAbstract.java:407)
org.apache.isis.core.metamodel.facets.actions.action.invocation.ActionInvocationFacetForDomainEventAbstract$2#execute(ActionInvocationFacetForDomainEventAbstract.java:261)
org.apache.isis.core.metamodel.facets.actions.action.invocation.ActionInvocationFacetForDomainEventAbstract$2#execute(ActionInvocationFacetForDomainEventAbstract.java:222)
org.apache.isis.applib.services.iactn.Interaction#executeInternal(Interaction.java:173)
org.apache.isis.applib.services.iactn.Interaction#execute(Interaction.java:143)
org.apache.isis.core.metamodel.facets.actions.action.invocation.ActionInvocationFacetForDomainEventAbstract#doInvoke(ActionInvocationFacetForDomainEventAbstract.java:310)
org.apache.isis.core.metamodel.facets.actions.action.invocation.ActionInvocationFacetForDomainEventAbstract$1#execute(ActionInvocationFacetForDomainEventAbstract.java:164)
org.apache.isis.core.runtime.system.transaction.IsisTransactionManager#executeWithinTransaction(IsisTransactionManager.java:142)
org.apache.isis.core.runtime.system.transaction.IsisTransactionManager#executeWithinTransaction(IsisTransactionManager.java:132)
org.apache.isis.core.runtime.services.persistsession.PersistenceSessionServiceInternalDefault#executeWithinTransaction(PersistenceSessionServiceInternalDefault.java:181)
org.apache.isis.core.metamodel.facets.actions.action.invocation.ActionInvocationFacetForDomainEventAbstract#invoke(ActionInvocationFacetForDomainEventAbstract.java:160)
org.apache.isis.core.metamodel.specloader.specimpl.ObjectActionDefault#executeInternal(ObjectActionDefault.java:400)
org.apache.isis.core.metamodel.specloader.specimpl.ObjectActionDefault#execute(ObjectActionDefault.java:389)
org.apache.isis.core.metamodel.specloader.specimpl.ObjectActionDefault#executeWithRuleChecking(ObjectActionDefault.java:370)
org.apache.isis.viewer.wicket.model.models.ActionModel#executeAction(ActionModel.java:491)
org.apache.isis.viewer.wicket.model.models.ActionModel#load(ActionModel.java:469)
org.apache.isis.viewer.wicket.model.models.ActionModel#load(ActionModel.java:81)
org.apache.wicket.model.LoadableDetachableModel#getObject(LoadableDetachableModel.java:135)
org.apache.isis.viewer.wicket.model.models.ActionModel#execute(ActionModel.java:597)
org.apache.isis.viewer.wicket.ui.components.actions.ActionFormExecutorStrategy#obtainResultAdapter(ActionFormExecutorStrategy.java:72)
org.apache.isis.viewer.wicket.ui.panels.FormExecutorDefault#obtainResultAdapter(FormExecutorDefault.java:498)
org.apache.isis.viewer.wicket.ui.panels.FormExecutorDefault#executeAndProcessResults(FormExecutorDefault.java:129)
org.apache.isis.viewer.wicket.ui.panels.PromptFormAbstract#onOkSubmittedOf(PromptFormAbstract.java:228)
org.apache.isis.viewer.wicket.ui.panels.PromptFormAbstract#access$000(PromptFormAbstract.java:60)
org.apache.isis.viewer.wicket.ui.panels.PromptFormAbstract$1#onSubmit(PromptFormAbstract.java:122)
org.apache.wicket.ajax.markup.html.form.AjaxButton$1#onSubmit(AjaxButton.java:113)
org.apache.wicket.ajax.form.AjaxFormSubmitBehavior$AjaxFormSubmitter#onSubmit(AjaxFormSubmitBehavior.java:215)
org.apache.wicket.markup.html.form.Form#delegateSubmit(Form.java:1307)
org.apache.wicket.markup.html.form.Form#process(Form.java:976)
org.apache.isis.viewer.wicket.ui.panels.FormAbstract#process(FormAbstract.java:77)
org.apache.wicket.markup.html.form.Form#onFormSubmitted(Form.java:797)
org.apache.wicket.ajax.form.AjaxFormSubmitBehavior#onEvent(AjaxFormSubmitBehavior.java:171)
org.apache.wicket.ajax.AjaxEventBehavior#respond(AjaxEventBehavior.java:155)
org.apache.wicket.ajax.AbstractDefaultAjaxBehavior#onRequest(AbstractDefaultAjaxBehavior.java:601)
sun.reflect.NativeMethodAccessorImpl#invoke0(NativeMethodAccessorImpl.java:-2)
sun.reflect.NativeMethodAccessorImpl#invoke(NativeMethodAccessorImpl.java:62)
sun.reflect.DelegatingMethodAccessorImpl#invoke(DelegatingMethodAccessorImpl.java:43)
java.lang.reflect.Method#invoke(Method.java:498)
org.apache.wicket.RequestListenerInterface#internalInvoke(RequestListenerInterface.java:258)
org.apache.wicket.RequestListenerInterface#invoke(RequestListenerInterface.java:241)
org.apache.wicket.core.request.handler.ListenerInterfaceRequestHandler#invokeListener(ListenerInterfaceRequestHandler.java:248)
org.apache.wicket.core.request.handler.ListenerInterfaceRequestHandler#respond(ListenerInterfaceRequestHandler.java:234)
org.apache.wicket.request.cycle.RequestCycle$HandlerExecutor#respond(RequestCycle.java:895)
org.apache.wicket.request.RequestHandlerStack#execute(RequestHandlerStack.java:64)
org.apache.wicket.request.cycle.RequestCycle#execute(RequestCycle.java:265)
org.apache.wicket.request.cycle.RequestCycle#processRequest(RequestCycle.java:222)
org.apache.wicket.request.cycle.RequestCycle#processRequestAndDetach(RequestCycle.java:293)
org.apache.wicket.protocol.http.WicketFilter#processRequestCycle(WicketFilter.java:261)
org.apache.wicket.protocol.http.WicketFilter#processRequest(WicketFilter.java:203)
org.apache.wicket.protocol.http.WicketFilter#doFilter(WicketFilter.java:284)
org.apache.catalina.core.ApplicationFilterChain#internalDoFilter(ApplicationFilterChain.java:192)
org.apache.catalina.core.ApplicationFilterChain#doFilter(ApplicationFilterChain.java:165)
org.togglz.servlet.TogglzFilter#doFilter(TogglzFilter.java:100)
org.apache.catalina.core.ApplicationFilterChain#internalDoFilter(ApplicationFilterChain.java:192)
org.apache.catalina.core.ApplicationFilterChain#doFilter(ApplicationFilterChain.java:165)
org.apache.shiro.web.servlet.AbstractShiroFilter#executeChain(AbstractShiroFilter.java:449)
org.apache.shiro.web.servlet.AbstractShiroFilter$1#call(AbstractShiroFilter.java:365)
org.apache.shiro.subject.support.SubjectCallable#doCall(SubjectCallable.java:90)
org.apache.shiro.subject.support.SubjectCallable#call(SubjectCallable.java:83)
org.apache.shiro.subject.support.DelegatingSubject#execute(DelegatingSubject.java:383)
org.apache.shiro.web.servlet.AbstractShiroFilter#doFilterInternal(AbstractShiroFilter.java:362)
org.apache.shiro.web.servlet.OncePerRequestFilter#doFilter(OncePerRequestFilter.java:125)
org.apache.catalina.core.ApplicationFilterChain#internalDoFilter(ApplicationFilterChain.java:192)
org.apache.catalina.core.ApplicationFilterChain#doFilter(ApplicationFilterChain.java:165)
org.apache.catalina.core.StandardWrapperValve#invoke(StandardWrapperValve.java:198)
org.apache.catalina.core.StandardContextValve#invoke(StandardContextValve.java:96)
org.apache.catalina.authenticator.AuthenticatorBase#invoke(AuthenticatorBase.java:474)
org.apache.catalina.core.StandardHostValve#invoke(StandardHostValve.java:140)
org.apache.catalina.valves.ErrorReportValve#invoke(ErrorReportValve.java:79)
org.apache.catalina.valves.AbstractAccessLogValve#invoke(AbstractAccessLogValve.java:624)
org.apache.catalina.core.StandardEngineValve#invoke(StandardEngineValve.java:87)
org.apache.catalina.connector.CoyoteAdapter#service(CoyoteAdapter.java:349)
org.apache.coyote.http11.Http11Processor#service(Http11Processor.java:783)
org.apache.coyote.AbstractProcessorLight#process(AbstractProcessorLight.java:66)
org.apache.coyote.AbstractProtocol$ConnectionHandler#process(AbstractProtocol.java:798)
org.apache.tomcat.util.net.NioEndpoint$SocketProcessor#doRun(NioEndpoint.java:1434)
org.apache.tomcat.util.net.SocketProcessorBase#run(SocketProcessorBase.java:49)
java.util.concurrent.ThreadPoolExecutor#runWorker(ThreadPoolExecutor.java:1142)
java.util.concurrent.ThreadPoolExecutor$Worker#run(ThreadPoolExecutor.java:617)
org.apache.tomcat.util.threads.TaskThread$WrappingRunnable#run(TaskThread.java:61)
java.lang.Thread#run(Thread.java:745)
The id of CommunicationChanel is described like following in DB: "id int4 NOT NULL DEFAULT nextval('"IncodeCommunications"."CommunicationChannel_id_seq"'::regclass)"
The Id of this table is automatically created for each insert statement. In this case that is not an insert statement but a find statement without reference Id. I mean it looks up in CommunicationChanelOwnerLink, if there is any row with id is blank.
public void setObject(PreparedStatement ps, int param, Object value)
{
try
{
if (value == null)
{
if (column != null && column.isDefaultable() && column.getDefaultValue() != null && !StringUtils.isWhitespace(column.getDefaultValue().toString()))
{
ps.setLong(param, Long.valueOf(column.getDefaultValue().toString().trim()).longValue());
}
else
this block code of BigIntRDBMSMapping says that, if the value is null (that is exactly in this case) then it will try to parse default value that was initialized by datanucleus before. In this case, default value = "nextvalIncodeCommunications.CommunicationChannel_id_seq::regclass". This value can not be convert to Long value.
Any idea what is exactly happen here?
Thanks.
use case: see my comment Apache Isis: Java Type mapping failed
root cause: see my comment Apache Isis: Java Type mapping failed
solution: no official solution exists. I've talked with Andy Jefferson from datanucleus team. But no useful answer. At the end I've patched the library by my self and wait for appropriate fix
I have the pre-trained model like Inception-v3. I want to remove the output layer and use it in image cognition. Here is the example given by tensorflow:
Just like the python framework Keras, it has a method like model.layers.pop(). I tried do it with tensorflow java api. First I tried to use dl4j, but when I imported the keras model, I got an error like this:
2017-06-15 21:15:43 INFO KerasInceptionV3Net:52 - Importing Inception model from data/inception-model.json
2017-06-15 21:15:43 INFO KerasInceptionV3Net:53 - Importing Weights model from data/inception_v3_complete
Exception in thread "main" java.lang.RuntimeException: Unknown exception.
at org.bytedeco.javacpp.hdf5$H5File.allocate(Native Method)
at org.bytedeco.javacpp.hdf5$H5File.<init>(hdf5.java:12713)
at org.deeplearning4j.nn.modelimport.keras.Hdf5Archive.<init>(Hdf5Archive.java:61)
at org.deeplearning4j.nn.modelimport.keras.KerasModel$ModelBuilder.weightsHdf5Filename(KerasModel.java:603)
at org.deeplearning4j.nn.modelimport.keras.KerasModelImport.importKerasModelAndWeights(KerasModelImport.java:176)
at edu.usc.irds.dl.dl4j.examples.KerasInceptionV3Net.<init>(KerasInceptionV3Net.java:55)
at edu.usc.irds.dl.dl4j.examples.KerasInceptionV3Net.main(KerasInceptionV3Net.java:108)
HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 0:
#000: C:\autotest\HDF5110ReleaseRWDITAR\src\H5F.c line 579 in H5Fopen(): unable to open file
major: File accessibilty
minor: Unable to open file
#001: C:\autotest\HDF5110ReleaseRWDITAR\src\H5Fint.c line 1100 in H5F_open(): unable to open file: time = Thu Jun 15 21:15:44 2017,name = 'data/inception_v3_complete', tent_flags = 0
major: File accessibilty
minor: Unable to open file
#002: C:\autotest\HDF5110ReleaseRWDITAR\src\H5FD.c line 812 in H5FD_open(): open failed
major: Virtual File Layer
minor: Unable to initialize object
#003: C:\autotest\HDF5110ReleaseRWDITAR\src\H5FDsec2.c line 348 in H5FD_sec2_open(): unable to open file: name = 'data/inception_v3_complete', errno = 2, error message = 'No such file or directory', flags = 0, o_flags = 0
major: File accessibilty
minor: Unable to open file
So I went back to tensorflow. I'm going to modify the model in keras and convert the model to tensor. Here is my conversion script:
input_fld = './'
output_node_names_of_input_network = ["pred0"]
write_graph_def_ascii_flag = True
output_node_names_of_final_network = 'output_node'
output_graph_name = 'test2.pb'
from keras.models import load_model
import tensorflow as tf
import os
import os.path as osp
from keras.applications.inception_v3 import InceptionV3
from keras.applications.vgg16 import VGG16
from keras.models import Sequential
from keras.layers.core import Flatten, Dense, Dropout
from keras.layers.convolutional import Convolution2D, MaxPooling2D, ZeroPadding2D
from keras.optimizers import SGD
output_fld = input_fld + 'tensorflow_model/'
if not os.path.isdir(output_fld):
os.mkdir(output_fld)
net_model = InceptionV3(weights='imagenet', include_top=True)
num_output = len(output_node_names_of_input_network)
pred = [None]*num_output
pred_node_names = [None]*num_output
for i in range(num_output):
pred_node_names[i] = output_node_names_of_final_network+str(i)
pred[i] = tf.identity(net_model.output[i], name=pred_node_names[i])
print('output nodes names are: ', pred_node_names)
from keras import backend as K
sess = K.get_session()
if write_graph_def_ascii_flag:
f = 'only_the_graph_def.pb.ascii'
tf.train.write_graph(sess.graph.as_graph_def(), output_fld, f, as_text=True)
print('saved the graph definition in ascii format at: ', osp.join(output_fld, f))
from tensorflow.python.framework import graph_util
from tensorflow.python.framework import graph_io
constant_graph = graph_util.convert_variables_to_constants(sess, sess.graph.as_graph_def(), pred_node_names)
graph_io.write_graph(constant_graph, output_fld, output_graph_name, as_t ext=False)
print('saved the constant graph (ready for inference) at: ', osp.join(output_fld, output_graph_name))
I got the model as .pb file, but when I put it into the tensor example, The LabelImage example, I got this error:
Exception in thread "main" java.lang.IllegalArgumentException: You must feed a value for placeholder tensor 'batch_normalization_1/keras_learning_phase' with dtype bool
[[Node: batch_normalization_1/keras_learning_phase = Placeholder[dtype=DT_BOOL, shape=<unknown>, _device="/job:localhost/replica:0/task:0/cpu:0"]()]]
at org.tensorflow.Session.run(Native Method)
at org.tensorflow.Session.access$100(Session.java:48)
at org.tensorflow.Session$Runner.runHelper(Session.java:285)
at org.tensorflow.Session$Runner.run(Session.java:235)
at com.dlut.cmh.sheng.LabelImage.executeInceptionGraph(LabelImage.java:98)
at com.dlut.cmh.sheng.LabelImage.main(LabelImage.java:51)
I don't know how to solve this. Can anyone help me? Or you have another way to do this?
The error message you get from the TensorFlow Java API:
Exception in thread "main" java.lang.IllegalArgumentException: You must feed a value for placeholder tensor 'batch_normalization_1/keras_learning_phase' with dtype bool
[[Node: batch_normalization_1/keras_learning_phase = Placeholder[dtype=DT_BOOL, shape=<unknown>, _device="/job:localhost/replica:0/task:0/cpu:0"]()]]
suggests that the model is constructed in a way that requires you to feed a boolean value for the tensor named batch_normalization_1/keras_learning_phase.
So, you'd have to include that in your call to run by changing:
try (Session s = new Session(g);
Tensor result = s.runner().feed("input",image).fetch("output").run().get(0)) {
to something like:
try (Session s = new Session(g);
Tensor learning_phase = Tensor.create(false);
Tensor result = s.runner().feed("input", image).feed("batch_normalization_1/keras_learning_phase", learning_phase).fetch("output").run().get(0)) {
The names of nodes you feed and fetch depend on the model, so it's possible that the names of the 'input' and 'output' nodes are different as well.
You might also want to consider using the TensorFlow SavedModel format (see also https://github.com/tensorflow/serving/issues/310#issuecomment-297015251)
Hope that helps
My distributed geode system went just well before, but recently not, and I don't know whether it's relevant to the company's power-cut last night. It seems all geode data persisted before can not be deserialize back now.
here's the error information:
Caused by: java.lang.IllegalStateException: Unknown pdx type=4
at com.gemstone.gemfire.internal.InternalDataSerializer.readPdxSerializable(InternalDataSerializer.java:3162)
at com.gemstone.gemfire.internal.InternalDataSerializer.basicReadObject(InternalDataSerializer.java:2979)
at com.gemstone.gemfire.DataSerializer.readObject(DataSerializer.java:3210)
at com.gemstone.gemfire.internal.util.BlobHelper.deserializeBlob(BlobHelper.java:101)
at com.gemstone.gemfire.internal.cache.EntryEventImpl.deserialize(EntryEventImpl.java:1554)
at com.gemstone.gemfire.internal.cache.EntryEventImpl.deserialize(EntryEventImpl.java:1546)
at com.gemstone.gemfire.internal.cache.PreferBytesCachedDeserializable.getDeserializedValue(PreferBytesCachedDeserializable.java:67)
at com.gemstone.gemfire.internal.cache.EntryEventImpl.getOldValue(EntryEventImpl.java:723)
at com.gemstone.gemfire.internal.cache.LocalRegion.validatedDestroy(LocalRegion.java:1146)
at com.gemstone.gemfire.internal.cache.LocalRegion.destroy(LocalRegion.java:1130)
at com.gemstone.gemfire.internal.cache.AbstractRegion.destroy(AbstractRegion.java:315)
at com.gemstone.gemfire.internal.cache.LocalRegion.remove(LocalRegion.java:9372)
at com.igola.datahub.wwl.geode.WWLResultsDAO.removeByKey(WWLResultsDAO.java:276)
my project was build on play framework and my configuration of geode cache and region is like this:
cache.setIsServer(true);
diskStorage = configuration.getString("geode.storage.name");
String fileStorage = configuration.getString("geode.storage.path");
cache.createDiskStoreFactory()
.setDiskDirs(new File[]{new File(fileStorage)})
.setDiskUsageWarningPercentage(0.8f)
.setAutoCompact(true)
.create(diskStorage);
geodeCache.getCache()
.<DataKey, When2GoData>createRegionFactory(PARTITION_REDUNDANT_PERSISTENT_OVERFLOW)
.setStatisticsEnabled(true)
.setEntryIdleTimeout(new ExpirationAttributes(TIMEOUT_LONG, ExpirationAction.DESTROY))
.setDiskStoreName(geodeCache.getDiskStorage())
.setPartitionAttributes(new PartitionAttributesFactory<>()
.setRedundantCopies(REDUNDANT_COPIES)
.setPartitionResolver(new DataKey())
.create())
.create("xxx");
cache = new CacheFactory()
.set("locators", configuration.getString("geode.locator"))
.set("name", configuration.getString("geode.name")+ "-"+ uuid)
.set("mcast-port", "0")
.set("log-level", "error")
.setPdxPersistent(true)
.setPdxReadSerialized(true)
.create();
Here's the relevant code from the readPdxSerializable method:
PdxType pdxType = gfc.getPdxRegistry().getType(typeId);
if (logger.isTraceEnabled(LogMarker.SERIALIZER)) {
logger.trace(LogMarker.SERIALIZER, "readPdxSerializable pdxType={}", pdxType);
}
if (pdxType == null) {
throw new IllegalStateException("Unknown pdx type=" + typeId);
}
So it looks like you have something in your cache that you can no longer deserialize ... due (I think) the fact that the type is no longer registered in the type registry.
I want to parse a log4j generated xml log. Within the xml is a node with a throwable (if any). This (multiline, tabbed) text is encapsulated in a CDATA tag.
This is an excerpt of the whole file:
<log4j:event logger="org.codehaus.groovy.grails.web.errors.GrailsExceptionResolver" timestamp="1330083921521" level="ERROR" thread="http-8080-1">
<log4j:message><![CDATA[Exception occurred when processing request: [GET] /test/log/show
Stacktrace follows:]]></log4j:message>
<log4j:throwable><![CDATA[org.xml.sax.SAXParseException: XML document structures must start and end within the same entity.
at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1231)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(SAXParserImpl.java:522)
at test.LogController$_closure2.doCall(LogController.groovy:21)
at test.LogController$_closure2.doCall(LogController.groovy)
at java.lang.Thread.run(Thread.java:662)
]]></log4j:throwable>
</log4j:event>
I parse it with groovys XmlParser:
def parser = new XmlParser(false, false).parse(new File("stack.log"))
return parser.'log4j:event'.collect { l ->
LogEntry entry = new LogEntry()
entry.with {
level = l.'#level'
message = l.'log4j:message'.text()
thread = l.'#thread'
logger = l.'#logger'
timestamp = new Date(l.'#timestamp' as long)
throwable = l.'log4j:throwable'?.text() ?: ''
}
entry
}
The 'throwable' field contains all the text but without CR/LF.
Does anybody know how to cope with that?
Thanks in advcance...
Hate to just throw code at you, but it seems to work as expected and returns the CRLFs
def xml = '''<log>
| <log4j:event logger="org.codehaus.groovy.grails.web.errors.GrailsExceptionResolver" timestamp="1330083921521" level="ERROR" thread="http-8080-1">
| <log4j:message><![CDATA[Exception occurred when processing request: [GET] /test/log/show
|Stacktrace follows:]]></log4j:message>
| <log4j:throwable><![CDATA[org.xml.sax.SAXParseException: XML document structures must start and end within the same entity.
| at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1231)
| at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(SAXParserImpl.java:522)
| at test.LogController$_closure2.doCall(LogController.groovy:21)
| at test.LogController$_closure2.doCall(LogController.groovy)
| at java.lang.Thread.run(Thread.java:662)
|]]></log4j:throwable>
| </log4j:event>
|</log>'''.stripMargin()
class LogEntry {
def level
def message
def thread
def logger
def timestamp
def throwable
String toString() {
"""EVENT:
| level : $level
| message : $message
| thread : $thread
| logger : $logger
| ts : $timestamp
| thrown : $throwable""".stripMargin()
}
}
def parser = new XmlParser(false, false).parseText( xml )
def entries = parser.'log4j:event'.collect { event ->
new LogEntry().with {
level = event.#level
message = event.'log4j:message'.text()
thread = event.#thread
logger = event.#logger
timestamp = new Date( event.#timestamp as long )
throwable = event.'log4j:throwable'?.text() ?: ''
it
}
}
entries.each {
println it
}
That prints:
EVENT:
level : ERROR
message : Exception occurred when processing request: [GET] /test/log/show
Stacktrace follows:
thread : http-8080-1
logger : org.codehaus.groovy.grails.web.errors.GrailsExceptionResolver
ts : Fri Feb 24 11:45:21 GMT 2012
thrown : org.xml.sax.SAXParseException: XML document structures must start and end within the same entity.
at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1231)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(SAXParserImpl.java:522)
at test.LogController$_closure2.doCall(LogController.groovy:21)
at test.LogController$_closure2.doCall(LogController.groovy)
at java.lang.Thread.run(Thread.java:662)
Which has CRLF chars in it where they are supposed to be...
This is with Groovy 1.8.6 btw... What version are you using? Can you upgrade and try again?
The xml standard calls for white space to be normalized during the parse.
I'm not sure, but the parser may have a setting to override this behavior. Otherwise, you could pre-process the file, replacing line endings inside c data sections with their xml entity equivalents, and then parse it.