Develop Reference

Spring Webapplistener Issue

I seem to be having some trouble with Spring webapplistener. I'm deploying an open-source servlet which I did not develop myself.
I'm a little new to the tomcat platform, so any thoughts as to potential fixes would be greatly appreciated! :)
May 30, 2013 12:01:11 PM org.apache.catalina.core.ApplicationContext log
INFO: No Spring WebApplicationInitializer types detected on classpath
May 30, 2013 12:01:11 PM org.apache.catalina.core.StandardContext listenerStart
SEVERE: Exception sending context initialized event to listener instance of class org.ambraproject.configuration.WebAppListener
java.lang.Error: Failed to load configuration
at org.ambraproject.configuration.WebAppListener.contextInitialized(WebAppListener.java:95)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4887)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5381)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:901)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:877)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:633)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:977)
at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1654)
at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source)
at java.util.concurrent.FutureTask.run(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
Caused by: java.net.MalformedURLException: unknown protocol: c
at java.net.URL.<init>(Unknown Source)
at java.net.URL.<init>(Unknown Source)
at java.net.URL.<init>(Unknown Source)
at org.ambraproject.configuration.WebAppListener.contextInitialized(WebAppListener.java:78)
... 14 more
May 30, 2013 12:01:11 PM org.apache.catalina.core.ApplicationContext log
INFO: Initializing Spring root WebApplicationContext
May 30, 2013 12:01:12 PM org.apache.catalina.core.StandardContext listenerStart
SEVERE: Exception sending context initialized event to listener instance of class org.springframework.web.context.ContextLoaderListener
org.springframework.beans.factory.BeanDefinitionStoreException: Invalid bean definition with name 'fetchArticleService' defined in ServletContext resource [/WEB-INF/applicationContext.xml]: ERROR: Configuration not loaded or initialized.
at org.springframework.beans.factory.config.PlaceholderConfigurerSupport.doProcessProperties(PlaceholderConfigurerSupport.java:209)
at org.springframework.beans.factory.config.PropertyPlaceholderConfigurer.processProperties(PropertyPlaceholderConfigurer.java:220)
at org.springframework.beans.factory.config.PropertyResourceConfigurer.postProcessBeanFactory(PropertyResourceConfigurer.java:84)
at org.springframework.context.support.AbstractApplicationContext.invokeBeanFactoryPostProcessors(AbstractApplicationContext.java:694)
at org.springframework.context.support.AbstractApplicationContext.invokeBeanFactoryPostProcessors(AbstractApplicationContext.java:669)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:461)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:389)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:294)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:112)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4887)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5381)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:901)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:877)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:633)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:977)
at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1654)
at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source)
at java.util.concurrent.FutureTask.run(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
May 30, 2013 12:01:12 PM org.apache.catalina.core.ApplicationContext log
INFO: Closing Spring root WebApplicationContext
May 30, 2013 12:01:12 PM org.apache.catalina.core.ApplicationContext log
INFO: ContextListener: contextInitialized()
May 30, 2013 12:01:12 PM org.apache.catalina.core.ApplicationContext log
INFO: SessionListener: contextInitialized()
May 30, 2013 12:01:12 PM org.apache.catalina.core.ApplicationContext log
INFO: ContextListener: attributeAdded('org.apache.jasper.compiler.TldLocationsCache', 'org.apache.jasper.compiler.TldLocationsCache#5c845ce9')
May 30, 2013 12:02:30 PM org.apache.catalina.core.ApplicationContext log
INFO: No Spring WebApplicationInitializer types detected on classpath
May 30, 2013 12:02:30 PM org.apache.catalina.core.StandardContext listenerStart
SEVERE: Exception sending context initialized event to listener instance of class org.ambraproject.configuration.WebAppListener
java.lang.Error: Failed to load configuration
at org.ambraproject.configuration.WebAppListener.contextInitialized(WebAppListener.java:95)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4887)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5381)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at org.apache.catalina.manager.ManagerServlet.start(ManagerServlet.java:1256)
at org.apache.catalina.manager.HTMLManagerServlet.start(HTMLManagerServlet.java:714)
at org.apache.catalina.manager.HTMLManagerServlet.doPost(HTMLManagerServlet.java:219)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:647)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:728)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.filters.CsrfPreventionFilter.doFilter(CsrfPreventionFilter.java:213)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.filters.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:108)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:222)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:123)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:581)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:99)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:953)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1008)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:589)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:312)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
Caused by: java.net.MalformedURLException: unknown protocol: c
at java.net.URL.<init>(Unknown Source)
at java.net.URL.<init>(Unknown Source)
at java.net.URL.<init>(Unknown Source)
at org.ambraproject.configuration.WebAppListener.contextInitialized(WebAppListener.java:78)
... 30 more
May 30, 2013 12:02:30 PM org.apache.catalina.core.ApplicationContext log
INFO: Initializing Spring root WebApplicationContext
May 30, 2013 12:02:31 PM org.apache.catalina.core.StandardContext listenerStart
SEVERE: Exception sending context initialized event to listener instance of class org.springframework.web.context.ContextLoaderListener
org.springframework.beans.factory.BeanDefinitionStoreException: Invalid bean definition with name 'fetchArticleService' defined in ServletContext resource [/WEB-INF/applicationContext.xml]: ERROR: Configuration not loaded or initialized.
at org.springframework.beans.factory.config.PlaceholderConfigurerSupport.doProcessProperties(PlaceholderConfigurerSupport.java:209)
at org.springframework.beans.factory.config.PropertyPlaceholderConfigurer.processProperties(PropertyPlaceholderConfigurer.java:220)
at org.springframework.beans.factory.config.PropertyResourceConfigurer.postProcessBeanFactory(PropertyResourceConfigurer.java:84)
at org.springframework.context.support.AbstractApplicationContext.invokeBeanFactoryPostProcessors(AbstractApplicationContext.java:694)
at org.springframework.context.support.AbstractApplicationContext.invokeBeanFactoryPostProcessors(AbstractApplicationContext.java:669)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:461)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:389)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:294)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:112)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4887)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5381)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at org.apache.catalina.manager.ManagerServlet.start(ManagerServlet.java:1256)
at org.apache.catalina.manager.HTMLManagerServlet.start(HTMLManagerServlet.java:714)
at org.apache.catalina.manager.HTMLManagerServlet.doPost(HTMLManagerServlet.java:219)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:647)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:728)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.filters.CsrfPreventionFilter.doFilter(CsrfPreventionFilter.java:213)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.filters.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:108)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:222)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:123)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:581)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:99)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:953)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1008)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:589)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:312)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
May 30, 2013 12:02:31 PM org.apache.catalina.core.ApplicationContext log
INFO: Closing Spring root WebApplicationContext
May 30, 2013 12:03:00 PM org.apache.catalina.core.ApplicationContext log
INFO: SessionListener: contextDestroyed()
May 30, 2013 12:03:00 PM org.apache.catalina.core.ApplicationContext log
INFO: ContextListener: contextDestroyed()

When we look at the error stack trace
org.springframework.beans.factory.BeanDefinitionStoreException: Invalid bean definition with name 'fetchArticleService' defined in ServletContext resource [/WEB-INF/applicationContext.xml]: ERROR: Configuration not loaded or initialized.
at org.springframework.beans.factory.config.PlaceholderConfigurerSupport.doProcessProperties(PlaceholderConfigurerSupport.java:209)
you notice the following error:
Invalid bean definition with name 'fetchArticleService' defined in ServletContext resource [/WEB-INF/applicationContext.xml]
Check if your bean definitions are properly defined. The following example shows the basic structure of XML-based configuration metadata:
<?xml version="1.0" encoding="UTF-8"?>
<beans xmlns="http://www.springframework.org/schema/beans"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://www.springframework.org/schema/beans
http://www.springframework.org/schema/beans/spring-beans-3.0.xsd">
<bean id="..." class="...">
<!-- collaborators and configuration for this bean go here -->
</bean>
<bean id="..." class="...">
<!-- collaborators and configuration for this bean go here -->
</bean>
<!-- more bean definitions go here -->
</beans>
Check with Spring Docs to make sure you have the bean definition in the applicationContext.xml right.

java.lang.unsatisfiedlinkerror can't load amd 64-bit .dll ia 32-bit

I'm getting the following error when I try to run my project on Eclipse. It worked fine on the computer I developed it on, but when I imported it to my laptop it didn't work.
This question has already been asked elsewhere on this site, and the main cause of this problem seems to be environment variables not set correctly. But I have checked them, and they seem to be correct, unless I have missed something?
I do have the 64 bit JRE installed. Also, why does a jndi exception come up?
java.lang.UnsatisfiedLinkError: C:\apache-tomcat-7.0.39-windows-x64\apache-tomcat-7.0.39\bin\tcnative-1.dll: Can't load AMD 64-bit .dll on a IA 32-bit platform
at java.lang.ClassLoader$NativeLibrary.load(Native Method)
at java.lang.ClassLoader.loadLibrary1(Unknown Source)
at java.lang.ClassLoader.loadLibrary0(Unknown Source)
at java.lang.ClassLoader.loadLibrary(Unknown Source)
at java.lang.Runtime.loadLibrary0(Unknown Source)
at java.lang.System.loadLibrary(Unknown Source)
at org.apache.tomcat.jni.Library.<init>(Library.java:42)
at org.apache.tomcat.jni.Library.initialize(Library.java:174)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at org.apache.catalina.core.AprLifecycleListener.init(AprLifecycleListener.java:180)
at org.apache.catalina.core.AprLifecycleListener.isAprAvailable(AprLifecycleListener.java:85)
at org.apache.catalina.connector.Connector.setProtocol(Connector.java:595)
at org.apache.catalina.connector.Connector.<init>(Connector.java:69)
at org.apache.catalina.startup.ConnectorCreateRule.begin(ConnectorCreateRule.java:62)
at org.apache.tomcat.util.digester.Digester.startElement(Digester.java:1276)
at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source)
at com.sun.org.apache.xerces.internal.parsers.AbstractXMLDocumentParser.emptyElement(Unknown Source)
at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source)
at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source)
at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source)
at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source)
at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source)
at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source)
at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source)
at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source)
at org.apache.tomcat.util.digester.Digester.parse(Digester.java:1537)
at org.apache.catalina.startup.Catalina.load(Catalina.java:610)
at org.apache.catalina.startup.Catalina.load(Catalina.java:658)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at org.apache.catalina.startup.Bootstrap.load(Bootstrap.java:281)
at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:455)
Apr 29, 2013 11:42:48 AM org.apache.catalina.core.AprLifecycleListener init
INFO: The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: C:\Program Files (x86)\Java\jre7\bin;C:\windows\Sun\Java\bin;C:\windows\system32;C:\windows;C:/Program Files (x86)/Java/jre7/bin/client;C:/Program Files (x86)/Java/jre7/bin;C:/Program Files (x86)/Java/jre7/lib/i386;C:\Program Files\Common Files\Microsoft Shared\Windows Live;C:\Program Files (x86)\Common Files\Microsoft Shared\Windows Live;C:\Program Files (x86)\AMD APP\bin\x86_64;C:\Program Files (x86)\AMD APP\bin\x86;C:\windows\system32;C:\windows;C:\windows\System32\Wbem;C:\windows\System32\WindowsPowerShell\v1.0\;C:\Program Files (x86)\ATI Technologies\ATI.ACE\Core-Static;C:\Program Files (x86)\Windows Live\Shared;C:\Program Files (x86)\QuickTime\QTSystem\;C:\Ant\apache-ant-1.9.0\bin;C:\Program Files\Java\jdk1.7.0_09\jre\bin;C:\apache-tomcat-7.0.39-windows-x64\apache-tomcat-7.0.39\bin;C:\eclipse-jee-indigo-SR2-win32\eclipse;;.
Apr 29, 2013 11:42:49 AM org.apache.tomcat.util.digester.SetPropertiesRule begin
WARNING: [SetPropertiesRule]{Server/Service/Engine/Host/Context} Setting property 'source' to 'org.eclipse.jst.jee.server:AjaxSpringMVC2' did not find a matching property.
Apr 29, 2013 11:42:49 AM org.apache.tomcat.util.digester.SetPropertiesRule begin
WARNING: [SetPropertiesRule]{Server/Service/Engine/Host/Context} Setting property 'source' to 'org.eclipse.jst.jee.server:ajaxjqjsbowling' did not find a matching property.
Apr 29, 2013 11:42:49 AM org.apache.coyote.AbstractProtocol init
INFO: Initializing ProtocolHandler ["http-bio-8080"]
Apr 29, 2013 11:42:49 AM org.apache.coyote.AbstractProtocol init
INFO: Initializing ProtocolHandler ["ajp-bio-8009"]
Apr 29, 2013 11:42:49 AM org.apache.catalina.startup.Catalina load
INFO: Initialization processed in 850 ms
Apr 29, 2013 11:42:49 AM org.apache.catalina.core.StandardService startInternal
INFO: Starting service Catalina
Apr 29, 2013 11:42:49 AM org.apache.catalina.core.StandardEngine startInternal
INFO: Starting Servlet Engine: Apache Tomcat/7.0.39
Apr 29, 2013 11:42:53 AM org.apache.catalina.core.ApplicationContext log
INFO: No Spring WebApplicationInitializer types detected on classpath
log4j:WARN No appenders could be found for logger (org.springframework.web.servlet.DispatcherServlet).
log4j:WARN Please initialize the log4j system properly.
Apr 29, 2013 11:42:53 AM org.apache.catalina.core.ApplicationContext log
SEVERE: StandardWrapper.Throwable
java.lang.NoSuchMethodError: org.springframework.jndi.JndiLocatorDelegate.isDefaultJndiEnvironmentAvailable()Z
at org.springframework.web.context.support.StandardServletEnvironment.customizePropertySources(StandardServletEnvironment.java:87)
at org.springframework.core.env.AbstractEnvironment.<init>(AbstractEnvironment.java:114)
at org.springframework.core.env.StandardEnvironment.<init>(StandardEnvironment.java:54)
at org.springframework.web.context.support.StandardServletEnvironment.<init>(StandardServletEnvironment.java:44)
at org.springframework.web.servlet.HttpServletBean.createEnvironment(HttpServletBean.java:213)
at org.springframework.web.servlet.HttpServletBean.getEnvironment(HttpServletBean.java:203)
at org.springframework.web.servlet.HttpServletBean.init(HttpServletBean.java:126)
at javax.servlet.GenericServlet.init(GenericServlet.java:160)
at org.apache.catalina.core.StandardWrapper.initServlet(StandardWrapper.java:1280)
at org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1193)
at org.apache.catalina.core.StandardWrapper.load(StandardWrapper.java:1088)
at org.apache.catalina.core.StandardContext.loadOnStartup(StandardContext.java:5123)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5407)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1559)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1549)
at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source)
at java.util.concurrent.FutureTask.run(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
Apr 29, 2013 11:42:53 AM org.apache.catalina.core.StandardContext loadOnStartup
SEVERE: Servlet /ajaxjqjsbowling threw load() exception
java.lang.NoSuchMethodError: org.springframework.jndi.JndiLocatorDelegate.isDefaultJndiEnvironmentAvailable()Z
at org.springframework.web.context.support.StandardServletEnvironment.customizePropertySources(StandardServletEnvironment.java:87)
at org.springframework.core.env.AbstractEnvironment.<init>(AbstractEnvironment.java:114)
at org.springframework.core.env.StandardEnvironment.<init>(StandardEnvironment.java:54)
at org.springframework.web.context.support.StandardServletEnvironment.<init>(StandardServletEnvironment.java:44)
at org.springframework.web.servlet.HttpServletBean.createEnvironment(HttpServletBean.java:213)
at org.springframework.web.servlet.HttpServletBean.getEnvironment(HttpServletBean.java:203)
at org.springframework.web.servlet.HttpServletBean.init(HttpServletBean.java:126)
at javax.servlet.GenericServlet.init(GenericServlet.java:160)
at org.apache.catalina.core.StandardWrapper.initServlet(StandardWrapper.java:1280)
at org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1193)
at org.apache.catalina.core.StandardWrapper.load(StandardWrapper.java:1088)
at org.apache.catalina.core.StandardContext.loadOnStartup(StandardContext.java:5123)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5407)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1559)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1549)
at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source)
at java.util.concurrent.FutureTask.run(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
Apr 29, 2013 11:42:53 AM org.apache.catalina.loader.WebappClassLoader validateJarFile
INFO: validateJarFile(C:\Users\JohnH\workspace\.metadata\.plugins\org.eclipse.wst.server.core\tmp0\wtpwebapps\AjaxSpringMVC2\WEB-INF\lib\javax.servlet.jar) - jar not loaded. See Servlet Spec 2.3, section 9.7.2. Offending class: javax/servlet/Servlet.class
Apr 29, 2013 11:42:54 AM org.apache.catalina.core.ApplicationContext log
INFO: No Spring WebApplicationInitializer types detected on classpath
log4j:WARN No appenders could be found for logger (org.springframework.web.servlet.DispatcherServlet).
log4j:WARN Please initialize the log4j system properly.
Apr 29, 2013 11:42:54 AM org.apache.catalina.core.ApplicationContext log
INFO: Initializing Spring FrameworkServlet 'Spring MVC Dispatcher Servlet'
Apr 29, 2013 11:42:56 AM org.apache.coyote.AbstractProtocol start
INFO: Starting ProtocolHandler ["http-bio-8080"]
Apr 29, 2013 11:42:56 AM org.apache.coyote.AbstractProtocol start
INFO: Starting ProtocolHandler ["ajp-bio-8009"]
Apr 29, 2013 11:42:56 AM org.apache.catalina.startup.Catalina start
INFO: Server startup in 6888 ms
Apr 29, 2013 11:42:56 AM org.apache.catalina.core.ApplicationContext log
SEVERE: StandardWrapper.Throwable
java.lang.NoSuchMethodError: org.springframework.jndi.JndiLocatorDelegate.isDefaultJndiEnvironmentAvailable()Z
at org.springframework.web.context.support.StandardServletEnvironment.customizePropertySources(StandardServletEnvironment.java:87)
at org.springframework.core.env.AbstractEnvironment.<init>(AbstractEnvironment.java:114)
at org.springframework.core.env.StandardEnvironment.<init>(StandardEnvironment.java:54)
at org.springframework.web.context.support.StandardServletEnvironment.<init>(StandardServletEnvironment.java:44)
at org.springframework.web.servlet.HttpServletBean.createEnvironment(HttpServletBean.java:213)
at org.springframework.web.servlet.HttpServletBean.getEnvironment(HttpServletBean.java:203)
at org.springframework.web.servlet.HttpServletBean.init(HttpServletBean.java:126)
at javax.servlet.GenericServlet.init(GenericServlet.java:160)
at org.apache.catalina.core.StandardWrapper.initServlet(StandardWrapper.java:1280)
at org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1193)
at org.apache.catalina.core.StandardWrapper.allocate(StandardWrapper.java:865)
at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:722)
at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:487)
at org.apache.catalina.core.ApplicationDispatcher.doForward(ApplicationDispatcher.java:412)
at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:339)
at org.apache.jasper.runtime.PageContextImpl.doForward(PageContextImpl.java:746)
at org.apache.jasper.runtime.PageContextImpl.forward(PageContextImpl.java:716)
at org.apache.jsp.index_jsp._jspService(index_jsp.java:65)
at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:728)
at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:432)
at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:390)
at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:334)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:728)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:222)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:123)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:472)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:99)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:947)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1009)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:589)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:310)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
Apr 29, 2013 11:42:56 AM org.apache.catalina.core.ApplicationDispatcher invoke
SEVERE: Allocate exception for servlet Spring MVC Dispatcher Servlet
java.lang.NoSuchMethodError: org.springframework.jndi.JndiLocatorDelegate.isDefaultJndiEnvironmentAvailable()Z
at org.springframework.web.context.support.StandardServletEnvironment.customizePropertySources(StandardServletEnvironment.java:87)
at org.springframework.core.env.AbstractEnvironment.<init>(AbstractEnvironment.java:114)
at org.springframework.core.env.StandardEnvironment.<init>(StandardEnvironment.java:54)
at org.springframework.web.context.support.StandardServletEnvironment.<init>(StandardServletEnvironment.java:44)
at org.springframework.web.servlet.HttpServletBean.createEnvironment(HttpServletBean.java:213)
at org.springframework.web.servlet.HttpServletBean.getEnvironment(HttpServletBean.java:203)
at org.springframework.web.servlet.HttpServletBean.init(HttpServletBean.java:126)
at javax.servlet.GenericServlet.init(GenericServlet.java:160)
at org.apache.catalina.core.StandardWrapper.initServlet(StandardWrapper.java:1280)
at org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1193)
at org.apache.catalina.core.StandardWrapper.allocate(StandardWrapper.java:865)
at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:722)
at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:487)
at org.apache.catalina.core.ApplicationDispatcher.doForward(ApplicationDispatcher.java:412)
at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:339)
at org.apache.jasper.runtime.PageContextImpl.doForward(PageContextImpl.java:746)
at org.apache.jasper.runtime.PageContextImpl.forward(PageContextImpl.java:716)
at org.apache.jsp.index_jsp._jspService(index_jsp.java:65)
at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:728)
at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:432)
at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:390)
at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:334)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:728)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:222)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:123)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:472)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:99)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:947)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1009)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:589)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:310)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
Apr 29, 2013 11:42:56 AM org.apache.catalina.core.StandardWrapperValve invoke
SEVERE: Servlet.service() for servlet [jsp] in context with path [/ajaxjqjsbowling] threw exception [javax.servlet.ServletException: Servlet.init() for servlet Spring MVC Dispatcher Servlet threw exception] with root cause
java.lang.NoSuchMethodError: org.springframework.jndi.JndiLocatorDelegate.isDefaultJndiEnvironmentAvailable()Z
at org.springframework.web.context.support.StandardServletEnvironment.customizePropertySources(StandardServletEnvironment.java:87)
at org.springframework.core.env.AbstractEnvironment.<init>(AbstractEnvironment.java:114)
at org.springframework.core.env.StandardEnvironment.<init>(StandardEnvironment.java:54)
at org.springframework.web.context.support.StandardServletEnvironment.<init>(StandardServletEnvironment.java:44)
at org.springframework.web.servlet.HttpServletBean.createEnvironment(HttpServletBean.java:213)
at org.springframework.web.servlet.HttpServletBean.getEnvironment(HttpServletBean.java:203)
at org.springframework.web.servlet.HttpServletBean.init(HttpServletBean.java:126)
at javax.servlet.GenericServlet.init(GenericServlet.java:160)
at org.apache.catalina.core.StandardWrapper.initServlet(StandardWrapper.java:1280)
at org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1193)
at org.apache.catalina.core.StandardWrapper.allocate(StandardWrapper.java:865)
at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:722)
at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:487)
at org.apache.catalina.core.ApplicationDispatcher.doForward(ApplicationDispatcher.java:412)
at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:339)
at org.apache.jasper.runtime.PageContextImpl.doForward(PageContextImpl.java:746)
at org.apache.jasper.runtime.PageContextImpl.forward(PageContextImpl.java:716)
at org.apache.jsp.index_jsp._jspService(index_jsp.java:65)
at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:728)
at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:432)
at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:390)
at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:334)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:728)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:222)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:123)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:472)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:99)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:947)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1009)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:589)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:310)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)

I had similar issue with my tomcat which is embeded in xampp. I was getting "java.lang.UnsatisfiedLinkError: tcnative-1.dll: Can' t load IA 32-bit .dll on a AMD 64-bit platform" error. To solve this issue. Download a 64 bit tomcat and replace
tcnative-1.dll
tomcat7.exe
tomcat7w.exe
files ,which are in directory xampp/tomcat/bin, with 64 bit tomcat's files.

Can't load AMD 64-bit .dll on a IA 32-bit platform
Are you sure you have a 64 bit processor on your laptop? This is a DLL load fail and has nothing to do with JRE. It looks like you are trying to run 64 bit tomcat on a 32 bit machine. Get a 32 bit tomcat on your laptop and try running your application.

This:
SEVERE: Servlet.service() for servlet [jsp] in context with path [/ajaxjqjsbowling] threw exception [javax.servlet.ServletException: Servlet.init() for servlet Spring MVC Dispatcher Servlet threw exception] with root cause
java.lang.NoSuchMethodError: org.springframework.jndi.JndiLocatorDelegate.isDefaultJndiEnvironmentAvailable()Z
l0ooks like a mismatch between the version of Spring you compiled with, and the version of Spring deployed (possibly in the container). It can find the Spring class JndiLocatorDelegate, but not the method (i.e. the clas sitself isn't missing - just the specific method you require)

I had to 2 DLL's (Visual Studio) ones to get it working:
loadLib(path, msvcr120);
loadLib(path, msvcp120);
Used dependency walker to identify the required DLLs for your custom JNI DLL.

I encountered the same error message. I am running a 64-bit version of Windows and had installed the 64-bit version of Tomcat. Anyway, for the solution I focused on the below INFO message:
INFO: The APR based Apache Tomcat Native library which allows optimal
performance in production environments was not found on the
java.library.path: C:\Program Files
(x86)\Java\jre7\bin;C:\windows\Sun\Java\bin;C:\windows\system32;C:\windows;C:/Program
Files (x86)/Java/jre7/bin/client;C:/Program Files
(x86)/Java/jre7/bin;C:/Program Files
(x86)/Java/jre7/lib/i386;C:\Program Files\Common Files\Microsoft
Shared\Windows Live;C:\Program Files (x86)\Common Files\Microsoft
Shared\Windows Live;C:\Program Files (x86)\AMD
APP\bin\x86_64;C:\Program Files (x86)\AMD
APP\bin\x86;C:\windows\system32;C:\windows;C:\windows\System32\Wbem;C:\windows\System32\WindowsPowerShell\v1.0\;C:\Program
Files (x86)\ATI Technologies\ATI.ACE\Core-Static;C:\Program Files
(x86)\Windows Live\Shared;C:\Program Files
(x86)\QuickTime\QTSystem\;C:\Ant\apache-ant-1.9.0\bin;C:\Program
Files\Java\jdk1.7.0_09\jre\bin;C:\apache-tomcat-7.0.39-windows-x64\apache-tomcat-7.0.39\bin;C:\eclipse-jee-indigo-SR2-win32\eclipse;;
When I checked my Environment Variables, I saw that CATALINA_HOME was set to another Tomcat path. When I changed the value to the correct path, Tomcat started successfully without an error.
I recommend you to check all paths in your all environment variables related to Java and Tomcat

Netbeans can not deploy JSF App after moving a class to another package

I need to refactor a bit and tried to move some classes from one to another package. After doing this, Netbeans can not deploy the app anymore.
i tried to move some dataobject classes from package: flow.dataobjects to flow.holiday.dataobjects. It appears only for this case. I have no idea why. I tried also to move one class from flow.dataobjects to flow.test.test package with the same error.
This is the netbeans Tomcat.Output:
Jan 11, 2013 6:41:06 AM org.apache.catalina.startup.HostConfig checkResources
INFO: Undeploying context []
Jan 11, 2013 6:41:06 AM org.apache.catalina.startup.HostConfig deployDescriptor
INFO: Deploying configuration descriptor /home/mfiz/.netbeans/7.2/apache-tomcat-7.0.27.0_base/conf/Catalina/localhost/ROOT.xml
Jan 11, 2013 6:41:08 AM com.sun.faces.config.ConfigureListener contextInitialized
INFO: Initializing Mojarra 2.1.13 ( 20120907-1514) for context ''
Jan 11, 2013 6:41:08 AM com.sun.faces.spi.InjectionProviderFactory createInstance
INFO: JSF1048: PostConstruct/PreDestroy annotations present. ManagedBeans methods marked with these annotations will have said annotations processed.
Jan 11, 2013 6:41:08 AM com.sun.faces.config.ConfigureListener contextInitialized
SEVERE: Critical error during deployment:
java.lang.NoClassDefFoundError: Lflow/dataobjects/HolidayDataObj;
at java.lang.Class.getDeclaredFields0(Native Method)
at java.lang.Class.privateGetDeclaredFields(Class.java:2291)
at java.lang.Class.getDeclaredFields(Class.java:1743)
at com.sun.faces.application.annotation.ManagedBeanConfigHandler.collectAnnotatedFields(ManagedBeanConfigHandler.java:246)
at com.sun.faces.application.annotation.ManagedBeanConfigHandler.getBeanInfo(ManagedBeanConfigHandler.java:155)
at com.sun.faces.application.annotation.ManagedBeanConfigHandler.process(ManagedBeanConfigHandler.java:141)
at com.sun.faces.application.annotation.ManagedBeanConfigHandler.push(ManagedBeanConfigHandler.java:127)
at com.sun.faces.application.annotation.AnnotationManager.applyConfigAnnotations(AnnotationManager.java:200)
at com.sun.faces.config.processor.AbstractConfigProcessor.processAnnotations(AbstractConfigProcessor.java:326)
at com.sun.faces.config.processor.ManagedBeanConfigProcessor.process(ManagedBeanConfigProcessor.java:244)
at com.sun.faces.config.processor.AbstractConfigProcessor.invokeNext(AbstractConfigProcessor.java:114)
at com.sun.faces.config.processor.ValidatorConfigProcessor.process(ValidatorConfigProcessor.java:120)
at com.sun.faces.config.processor.AbstractConfigProcessor.invokeNext(AbstractConfigProcessor.java:114)
at com.sun.faces.config.processor.ConverterConfigProcessor.process(ConverterConfigProcessor.java:126)
at com.sun.faces.config.processor.AbstractConfigProcessor.invokeNext(AbstractConfigProcessor.java:114)
at com.sun.faces.config.processor.ComponentConfigProcessor.process(ComponentConfigProcessor.java:117)
at com.sun.faces.config.processor.AbstractConfigProcessor.invokeNext(AbstractConfigProcessor.java:114)
at com.sun.faces.config.processor.ApplicationConfigProcessor.process(ApplicationConfigProcessor.java:340)
at com.sun.faces.config.processor.AbstractConfigProcessor.invokeNext(AbstractConfigProcessor.java:114)
at com.sun.faces.config.processor.LifecycleConfigProcessor.process(LifecycleConfigProcessor.java:116)
at com.sun.faces.config.processor.AbstractConfigProcessor.invokeNext(AbstractConfigProcessor.java:114)
at com.sun.faces.config.processor.FactoryConfigProcessor.process(FactoryConfigProcessor.java:222)
at com.sun.faces.config.ConfigManager.initialize(ConfigManager.java:362)
at com.sun.faces.config.ConfigureListener.contextInitialized(ConfigureListener.java:223)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4779)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5273)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:895)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:871)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:615)
at org.apache.catalina.startup.HostConfig.deployDescriptor(HostConfig.java:649)
at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:530)
at org.apache.catalina.startup.HostConfig.check(HostConfig.java:1471)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.tomcat.util.modeler.BaseModelMBean.invoke(BaseModelMBean.java:301)
at com.sun.jmx.interceptor.DefaultMBeanServerInterceptor.invoke(DefaultMBeanServerInterceptor.java:836)
at com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(JmxMBeanServer.java:761)
at org.apache.catalina.manager.ManagerServlet.check(ManagerServlet.java:1436)
at org.apache.catalina.manager.ManagerServlet.deploy(ManagerServlet.java:856)
at org.apache.catalina.manager.ManagerServlet.doGet(ManagerServlet.java:353)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:621)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.filters.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:108)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:225)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:169)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:581)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:168)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:98)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:927)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:407)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:999)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:565)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:307)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
at java.lang.Thread.run(Thread.java:662)
Caused by: java.lang.ClassNotFoundException: flow.dataobjects.HolidayDataObj
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1711)
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1556)
... 64 more
Jan 11, 2013 6:41:08 AM org.apache.catalina.core.StandardContext startInternal
SEVERE: Error listenerStart
The Netbeans Tomcat.Log.Output:
Jan 11, 2013 6:41:06 AM org.apache.catalina.core.StandardContext listenerStart
SEVERE: Exception sending context initialized event to listener instance of class com.sun.faces.config.ConfigureListener
java.lang.RuntimeException: java.lang.NoClassDefFoundError: Lflow/dataobjects/HolidayDataObj;
at com.sun.faces.config.ConfigureListener.contextInitialized(ConfigureListener.java:290)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4779)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5273)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:895)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:871)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:615)
at org.apache.catalina.startup.HostConfig.deployDescriptor(HostConfig.java:649)
at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:530)
at org.apache.catalina.startup.HostConfig.check(HostConfig.java:1471)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.tomcat.util.modeler.BaseModelMBean.invoke(BaseModelMBean.java:301)
at com.sun.jmx.interceptor.DefaultMBeanServerInterceptor.invoke(DefaultMBeanServerInterceptor.java:836)
at com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(JmxMBeanServer.java:761)
at org.apache.catalina.manager.ManagerServlet.check(ManagerServlet.java:1436)
at org.apache.catalina.manager.ManagerServlet.deploy(ManagerServlet.java:856)
at org.apache.catalina.manager.ManagerServlet.doGet(ManagerServlet.java:353)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:621)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.filters.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:108)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:225)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:169)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:581)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:168)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:98)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:927)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:407)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:999)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:565)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:307)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
at java.lang.Thread.run(Thread.java:662)
Caused by: java.lang.NoClassDefFoundError: Lflow/dataobjects/HolidayDataObj;
at java.lang.Class.getDeclaredFields0(Native Method)
at java.lang.Class.privateGetDeclaredFields(Class.java:2291)
at java.lang.Class.getDeclaredFields(Class.java:1743)
at com.sun.faces.application.annotation.ManagedBeanConfigHandler.collectAnnotatedFields(ManagedBeanConfigHandler.java:246)
at com.sun.faces.application.annotation.ManagedBeanConfigHandler.getBeanInfo(ManagedBeanConfigHandler.java:155)
at com.sun.faces.application.annotation.ManagedBeanConfigHandler.process(ManagedBeanConfigHandler.java:141)
at com.sun.faces.application.annotation.ManagedBeanConfigHandler.push(ManagedBeanConfigHandler.java:127)
at com.sun.faces.application.annotation.AnnotationManager.applyConfigAnnotations(AnnotationManager.java:200)
at com.sun.faces.config.processor.AbstractConfigProcessor.processAnnotations(AbstractConfigProcessor.java:326)
at com.sun.faces.config.processor.ManagedBeanConfigProcessor.process(ManagedBeanConfigProcessor.java:244)
at com.sun.faces.config.processor.AbstractConfigProcessor.invokeNext(AbstractConfigProcessor.java:114)
at com.sun.faces.config.processor.ValidatorConfigProcessor.process(ValidatorConfigProcessor.java:120)
at com.sun.faces.config.processor.AbstractConfigProcessor.invokeNext(AbstractConfigProcessor.java:114)
at com.sun.faces.config.processor.ConverterConfigProcessor.process(ConverterConfigProcessor.java:126)
at com.sun.faces.config.processor.AbstractConfigProcessor.invokeNext(AbstractConfigProcessor.java:114)
at com.sun.faces.config.processor.ComponentConfigProcessor.process(ComponentConfigProcessor.java:117)
at com.sun.faces.config.processor.AbstractConfigProcessor.invokeNext(AbstractConfigProcessor.java:114)
at com.sun.faces.config.processor.ApplicationConfigProcessor.process(ApplicationConfigProcessor.java:340)
at com.sun.faces.config.processor.AbstractConfigProcessor.invokeNext(AbstractConfigProcessor.java:114)
at com.sun.faces.config.processor.LifecycleConfigProcessor.process(LifecycleConfigProcessor.java:116)
at com.sun.faces.config.processor.AbstractConfigProcessor.invokeNext(AbstractConfigProcessor.java:114)
at com.sun.faces.config.processor.FactoryConfigProcessor.process(FactoryConfigProcessor.java:222)
at com.sun.faces.config.ConfigManager.initialize(ConfigManager.java:362)
at com.sun.faces.config.ConfigureListener.contextInitialized(ConfigureListener.java:223)
... 40 more
Caused by: java.lang.ClassNotFoundException: flow.dataobjects.HolidayDataObj
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1711)
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1556)
... 64 more
Jan 11, 2013 6:41:08 AM org.apache.catalina.core.StandardContext listenerStart
SEVERE: Exception sending context initialized event to listener instance of class com.sun.faces.config.ConfigureListener
java.lang.RuntimeException: java.lang.NoClassDefFoundError: Lflow/dataobjects/HolidayDataObj;
at com.sun.faces.config.ConfigureListener.contextInitialized(ConfigureListener.java:290)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4779)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5273)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:895)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:871)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:615)
at org.apache.catalina.startup.HostConfig.deployDescriptor(HostConfig.java:649)
at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:530)
at org.apache.catalina.startup.HostConfig.check(HostConfig.java:1471)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.tomcat.util.modeler.BaseModelMBean.invoke(BaseModelMBean.java:301)
at com.sun.jmx.interceptor.DefaultMBeanServerInterceptor.invoke(DefaultMBeanServerInterceptor.java:836)
at com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(JmxMBeanServer.java:761)
at org.apache.catalina.manager.ManagerServlet.check(ManagerServlet.java:1436)
at org.apache.catalina.manager.ManagerServlet.deploy(ManagerServlet.java:856)
at org.apache.catalina.manager.ManagerServlet.doGet(ManagerServlet.java:353)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:621)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.filters.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:108)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:225)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:169)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:581)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:168)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:98)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:927)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:407)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:999)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:565)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:307)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
at java.lang.Thread.run(Thread.java:662)
Caused by: java.lang.NoClassDefFoundError: Lflow/dataobjects/HolidayDataObj;
at java.lang.Class.getDeclaredFields0(Native Method)
at java.lang.Class.privateGetDeclaredFields(Class.java:2291)
at java.lang.Class.getDeclaredFields(Class.java:1743)
at com.sun.faces.application.annotation.ManagedBeanConfigHandler.collectAnnotatedFields(ManagedBeanConfigHandler.java:246)
at com.sun.faces.application.annotation.ManagedBeanConfigHandler.getBeanInfo(ManagedBeanConfigHandler.java:155)
at com.sun.faces.application.annotation.ManagedBeanConfigHandler.process(ManagedBeanConfigHandler.java:141)
at com.sun.faces.application.annotation.ManagedBeanConfigHandler.push(ManagedBeanConfigHandler.java:127)
at com.sun.faces.application.annotation.AnnotationManager.applyConfigAnnotations(AnnotationManager.java:200)
at com.sun.faces.config.processor.AbstractConfigProcessor.processAnnotations(AbstractConfigProcessor.java:326)
at com.sun.faces.config.processor.ManagedBeanConfigProcessor.process(ManagedBeanConfigProcessor.java:244)
at com.sun.faces.config.processor.AbstractConfigProcessor.invokeNext(AbstractConfigProcessor.java:114)
at com.sun.faces.config.processor.ValidatorConfigProcessor.process(ValidatorConfigProcessor.java:120)
at com.sun.faces.config.processor.AbstractConfigProcessor.invokeNext(AbstractConfigProcessor.java:114)
at com.sun.faces.config.processor.ConverterConfigProcessor.process(ConverterConfigProcessor.java:126)
at com.sun.faces.config.processor.AbstractConfigProcessor.invokeNext(AbstractConfigProcessor.java:114)
at com.sun.faces.config.processor.ComponentConfigProcessor.process(ComponentConfigProcessor.java:117)
at com.sun.faces.config.processor.AbstractConfigProcessor.invokeNext(AbstractConfigProcessor.java:114)
at com.sun.faces.config.processor.ApplicationConfigProcessor.process(ApplicationConfigProcessor.java:340)
at com.sun.faces.config.processor.AbstractConfigProcessor.invokeNext(AbstractConfigProcessor.java:114)
at com.sun.faces.config.processor.LifecycleConfigProcessor.process(LifecycleConfigProcessor.java:116)
at com.sun.faces.config.processor.AbstractConfigProcessor.invokeNext(AbstractConfigProcessor.java:114)
at com.sun.faces.config.processor.FactoryConfigProcessor.process(FactoryConfigProcessor.java:222)
at com.sun.faces.config.ConfigManager.initialize(ConfigManager.java:362)
at com.sun.faces.config.ConfigureListener.contextInitialized(ConfigureListener.java:223)
... 40 more
Caused by: java.lang.ClassNotFoundException: flow.dataobjects.HolidayDataObj
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1711)
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1556)
... 64 more
Is this a bug or a feature? Because the application at self is build correctly.
Thanks for any help.

This problem can be caused by the Netbeans compile cache. Referring to this answer you could try the following (on a Windows machine):
Stop the server
Clean the project
Stop NetBeans
Delete %HOME%.netbeans\7.x\var\cache
Start NetBeans
The part 7.x needs to be changed to your particular Netbeans version.
[update]
For anyone running version 7.2 or later (including the 8.x range), the cache folder has been moved. Each installed version will create it's own subfolder here:
[alt] Delete the contents of %USERPROFILE%\AppData\Local\NetBeans\Cache\

For Linux User:
Stop the server
Clean the project
Stop NetBeans
Rename or Delete /home/*YOUR USERNAME*/.cache/netbeans/7.x/index
Start NetBeans
Note: Replace 7.x with the Version you use.

Tomcat error running war file

When I try to run a web app com tomcat I get this error:
FAIL - Encountered exception javax.management.RuntimeOperationsException: Exception invoking method check
I have put the war file in the webapps folder, then when I click in the "Start" button I get the error "FAIL - Application at context path /Black.ArtespPAP could not be started".
So I tried to deploy the app manually in the deploy from (setting the context, xml file and war path) and I get the javax exception above.
Could anyone help me?
catalina.out log:
org.springframework.beans.factory.BeanInitializationException: Could not load properties; nested exception is java.io.FileNotFoundException: /home/ubuntu/tomcat/conf/pap.properties (No such file or directory)
at org.springframework.beans.factory.config.PropertyResourceConfigurer.postProcessBeanFactory(PropertyResourceConfigurer.java:78)
at org.springframework.context.support.AbstractApplicationContext.invokeBeanFactoryPostProcessors(AbstractApplicationContext.java:663)
at org.springframework.context.support.AbstractApplicationContext.invokeBeanFactoryPostProcessors(AbstractApplicationContext.java:638)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:407)
at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:276)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:197)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:47)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4791)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5285)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at org.apache.catalina.manager.ManagerServlet.start(ManagerServlet.java:1255)
at org.apache.catalina.manager.HTMLManagerServlet.start(HTMLManagerServlet.java:714)
at org.apache.catalina.manager.HTMLManagerServlet.doPost(HTMLManagerServlet.java:219)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:641)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.filters.CsrfPreventionFilter.doFilter(CsrfPreventionFilter.java:186)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.filters.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:108)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:222)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:123)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:581)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:168)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:99)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:929)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:407)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1002)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:585)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:310)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603)
at java.lang.Thread.run(Thread.java:722)
Caused by: java.io.FileNotFoundException: /home/ubuntu/tomcat/conf/pap.properties (No such file or directory)
at java.io.FileInputStream.open(Native Method)
at java.io.FileInputStream.<init>(FileInputStream.java:138)
at java.io.FileInputStream.<init>(FileInputStream.java:97)
at sun.net.www.protocol.file.FileURLConnection.connect(FileURLConnection.java:90)
at sun.net.www.protocol.file.FileURLConnection.getInputStream(FileURLConnection.java:188)
at org.springframework.core.io.UrlResource.getInputStream(UrlResource.java:124)
at org.springframework.core.io.support.PropertiesLoaderSupport.loadProperties(PropertiesLoaderSupport.java:181)
at org.springframework.core.io.support.PropertiesLoaderSupport.mergeProperties(PropertiesLoaderSupport.java:161)
at org.springframework.beans.factory.config.PropertyResourceConfigurer.postProcessBeanFactory(PropertyResourceConfigurer.java:69)
... 36 more
Sep 17, 2012 10:14:53 AM org.apache.catalina.core.StandardContext startInternal
SEVERE: Error listenerStart
Sep 17, 2012 10:14:53 AM org.apache.catalina.core.StandardContext startInternal
SEVERE: Context [/Black.ArtespPAP] startup failed due to previous errors
Thanks.

It is clear from the logs that the file /home/ubuntu/tomcat/conf/pap.properties is missing. It looks like a config file used by the Spring framework (based on the stack trace). Afaik it is not a standard file but an application-specific one, so you would have to dig into your application code or documentation to figure out what it is used for and what it should contain.

have you checked tomcat logs (tomcat/logs/catalina.out and/or your application logs)? Stack traces are there... How do you deploy it manually? Generally, for tomcat, to deploy app, it's enough to copy a .war file into tomcat/webapps folder.

Tomcat - Unable to compile class for JSP

I run Tomcat 7 on my local development machine and my web app runs fine, moving it to the server (also running Tomcat 7), I started getting Error 500, complaining of some inability to compile some JSPs. I've restarted the server, but still doesn't fix it. Here is my most recent log. What could be the problem?
Here is a screenshot of what I got while trying to access the index.jsp at the context root (all other pages too do the same) https://docs.google.com/open?id=0B62YJhbvaJNkN3hjTUpEMVp1eUk
Somethings they may load after about 4 refreshes. I also saw some permGen stuff. Please I need help. Thanks!
Aug 25, 2012 5:05:29 AM org.apache.catalina.core.StandardWrapperValve invoke
SEVERE: Servlet.service() for servlet [LoginChurch] in context with path [/ReligionApp] threw exception [Servlet execution threw an exception] with root cause
java.lang.OutOfMemoryError: PermGen space
at java.lang.ClassLoader.defineClass1(Native Method)
at java.lang.ClassLoader.defineClass(ClassLoader.java:634)
at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
at org.apache.catalina.loader.WebappClassLoader.findClassInternal(WebappClassLoader.java:2818)
at org.apache.catalina.loader.WebappClassLoader.findClass(WebappClassLoader.java:1148)
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1643)
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1521)
at java.lang.ClassLoader.loadClassInternal(ClassLoader.java:334)
at com.mchange.v2.c3p0.C3P0Registry.reregister(C3P0Registry.java:239)
at com.mchange.v2.c3p0.impl.DriverManagerDataSourceBase.<init>(DriverManagerDataSourceBase.java:212)
at com.mchange.v2.c3p0.DriverManagerDataSource.<init>(DriverManagerDataSource.java:60)
at com.mchange.v2.c3p0.DriverManagerDataSource.<init>(DriverManagerDataSource.java:56)
at com.mchange.v2.c3p0.DataSources.unpooledDataSource(DataSources.java:152)
at org.hibernate.connection.C3P0ConnectionProvider.configure(C3P0ConnectionProvider.java:154)
at org.hibernate.connection.ConnectionProviderFactory.newConnectionProvider(ConnectionProviderFactory.java:124)
at org.hibernate.connection.ConnectionProviderFactory.newConnectionProvider(ConnectionProviderFactory.java:56)
at org.hibernate.cfg.SettingsFactory.createConnectionProvider(SettingsFactory.java:414)
at org.hibernate.cfg.SettingsFactory.buildSettings(SettingsFactory.java:62)
at org.hibernate.cfg.Configuration.buildSettings(Configuration.java:2009)
at org.hibernate.cfg.Configuration.buildSessionFactory(Configuration.java:1292)
at org.hibernate.cfg.AnnotationConfiguration.buildSessionFactory(AnnotationConfiguration.java:859)
at com.pacesolutions.religionapp.HibernateUtil.<clinit>(HibernateUtil.java:24)
at com.pacesolutions.religionapp.services.LoginChurch.processRequest(LoginChurch.java:68)
at com.pacesolutions.religionapp.services.LoginChurch.doPost(LoginChurch.java:140)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:641)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:306)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:240)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:161)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:496)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:164)
Aug 25, 2012 5:06:04 AM org.apache.catalina.core.StandardWrapperValve invoke
SEVERE: Servlet.service() for servlet [LoginChurch] in context with path [/ReligionApp] threw exception [Servlet execution threw an exception] with root cause
java.lang.NoClassDefFoundError: Could not initialize class com.pacesolutions.religionapp.HibernateUtil
at com.pacesolutions.religionapp.services.LoginChurch.processRequest(LoginChurch.java:68)
at com.pacesolutions.religionapp.services.LoginChurch.doGet(LoginChurch.java:127)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:621)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:306)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:240)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:161)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:496)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:164)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:100)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:541)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:383)
at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:243)
at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:188)
at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:166)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:288)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603)
at java.lang.Thread.run(Thread.java:636)
Aug 25, 2012 5:11:50 AM org.apache.catalina.core.StandardWrapperValve invoke
SEVERE: Servlet.service() for servlet [LoginChurch] in context with path [/ReligionApp] threw exception [Servlet execution threw an exception] with root cause
java.lang.NoClassDefFoundError: Could not initialize class com.pacesolutions.religionapp.HibernateUtil
at com.pacesolutions.religionapp.services.LoginChurch.processRequest(LoginChurch.java:68)
at com.pacesolutions.religionapp.services.LoginChurch.doPost(LoginChurch.java:140)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:641)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:306)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:240)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:161)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:496)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:164)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:100)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:541)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:383)
at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:243)
at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:188)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:288)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603)
at java.lang.Thread.run(Thread.java:636)
Aug 25, 2012 7:18:05 AM org.apache.catalina.core.ApplicationContext log
INFO: ContextListener: contextInitialized()
Aug 25, 2012 7:18:05 AM org.apache.catalina.core.ApplicationContext log
INFO: SessionListener: contextInitialized()
Aug 25, 2012 7:18:05 AM org.apache.catalina.core.ApplicationContext log
INFO: SessionListener: contextDestroyed()
Aug 25, 2012 7:18:05 AM org.apache.catalina.core.ApplicationContext log
INFO: ContextListener: contextDestroyed()

The permen space is where the VM stores the class, methods (among others). As tomcat compiles the class dynamically, it can use too much of this space which has a fixed upper bounds (usually 64Mb).
Try to give more permgen space to tomcat with the -XX:MaxPermSize option.
Have a look at this article for an explanation : http://java.sun.com/docs/hotspot/gc/

The other issue is a class not found that is caused by the PermGenSpace OOM Error. So it is not relevant in this case.
Which user is running the tomcat server? Is that root or another user? Does this user have permissions to write in the directory stated by the last root cause in the provided stacktrace? See the FileNotFoundException.