Develop Reference

Could not create resource instance in Tomcat, when trying to configure Application name in dynamic Manner using JNDI

I am using Tomcat 9 and trying to configure the name of application in dynamic manner using JNDI as shown in the below link.
https://tomcat.apache.org/tomcat-9.0-doc/jndi-resources-howto.html
I did the below changes
Web.xml of Application
<resource-env-ref>
<resource-env-ref-name>moduleName</resource-env-ref-name>
<resource-env-ref-type>java.lang.String</resource-env-ref-type>
</resource-env-ref>
Tomcat Server
Context.xml
<ResourceLink auth="Container" global="Application_moduleName" name="moduleName" type="java.lang.String"/>
Server.xml
<GlobalNamingResources>
<Resource auth="Container" name="moduleName" override="false" type="java.lang.String" value="my-application"/>
</GlobalNamingResources>
Got the below Exception during application startup:
Mar 03, 2022 9:50:03 PM org.apache.catalina.mbeans.GlobalResourcesLifecycleListener createMBeans
SEVERE: Exception processing global JNDI Resources
javax.naming.NamingException: Could not create resource instance
at org.apache.naming.factory.FactoryBase.getObjectInstance(FactoryBase.java:98)
at javax.naming.spi.NamingManager.getObjectInstance(NamingManager.java:321)
at org.apache.naming.NamingContext.lookup(NamingContext.java:864)
at org.apache.naming.NamingContext.lookup(NamingContext.java:158)
at org.apache.naming.NamingContextBindingsEnumeration.nextElementInternal(NamingContextBindingsEnumeration.java:115)
at org.apache.naming.NamingContextBindingsEnumeration.next(NamingContextBindingsEnumeration.java:69)
at org.apache.naming.NamingContextBindingsEnumeration.next(NamingContextBindingsEnumeration.java:32)
at org.apache.catalina.mbeans.GlobalResourcesLifecycleListener.createMBeans(GlobalResourcesLifecycleListener.java:133)
at org.apache.catalina.mbeans.GlobalResourcesLifecycleListener.createMBeans(GlobalResourcesLifecycleListener.java:107)
at org.apache.catalina.mbeans.GlobalResourcesLifecycleListener.lifecycleEvent(GlobalResourcesLifecycleListener.java:82)
at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:123)
at org.apache.catalina.util.LifecycleBase.setStateInternal(LifecycleBase.java:423)
at org.apache.catalina.util.LifecycleBase.setState(LifecycleBase.java:366)
at org.apache.catalina.core.StandardServer.startInternal(StandardServer.java:920)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.startup.Catalina.start(Catalina.java:772)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:345)
at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:476)
Can anyone tell me what I am missing here.
Is there any other better way to pass application name in dynamic manner without using JNDI?
Thanks
Manzoor

Knowage stops responding [on Apache Tomcat]

I'm using Knowage and have setup a data source, many parameterized datasets, and a cockpit.
I have a detailed report that requires many datasets.
The cockpit started freezing and I have to restart the Knowage server to get it to respond.
I split the report into different pages, and it seemed to help because it only loads some of the data at a time.
But now I added another dataset [14 total] and the server crashed again.
I'm monitoring the server through a jmx agent to understand why it's hanging, but the utilization seems fine.
Tomcat just hangs and never responds.
It appears the servlet has stopped processing requests, but I don't see any errors in the logs that look fatal.
The heap utilization is not bad, but does look anomalous.
Top output -
Errors in log -
[http-nio-8080-exec-17] 09 Mar 2021 15:46:49,390 ERROR it.eng.spagobi.api.v3.DataSetMainDTO.isGeoDataSet:51 - Error during check of Geo spatial column
com.fasterxml.jackson.core.JsonParseException: Unexpected character ('<' (code 60)): expected a valid value (number, String, array, object, 'true', 'false' or 'null')
at [Source: (String)"<?xml version="1.0" encoding="UTF-8"?>
<META version="1">
<COLUMNLIST>
<COLUMN alias="label" fieldType="ATTRIBUTE" multivalue="false" name="label" type="java.lang.String"/>
<COLUMN alias="amount" fieldType="MEASURE" multivalue="false" name="amount" type="java.math.BigDecimal"/>
</COLUMNLIST>
<DATASET>
<PROPERTY name="resultNumber" value="2"/>
</DATASET>
</META>
"; line: 1, column: 2]
at com.fasterxml.jackson.core.JsonParser._constructError(JsonParser.java:1798)
at com.fasterxml.jackson.core.base.ParserMinimalBase._reportError(ParserMinimalBase.java:663)
at com.fasterxml.jackson.core.base.ParserMinimalBase._reportUnexpectedChar(ParserMinimalBase.java:561)
at com.fasterxml.jackson.core.json.ReaderBasedJsonParser._handleOddValue(ReaderBasedJsonParser.java:1892)
at com.fasterxml.jackson.core.json.ReaderBasedJsonParser.nextToken(ReaderBasedJsonParser.java:747)
at com.fasterxml.jackson.databind.ObjectMapper._initForReading(ObjectMapper.java:4129)
at com.fasterxml.jackson.databind.ObjectMapper._readMapAndClose(ObjectMapper.java:3988)
at com.fasterxml.jackson.databind.ObjectMapper.readValue(ObjectMapper.java:2992)
at it.eng.spagobi.utilities.json.JSONUtils.toJSONObject(JSONUtils.java:98)
at it.eng.spagobi.analiticalmodel.execution.service.ExecuteAdHocUtility.hasGeoHierarchy(ExecuteAdHocUtility.java:128)
.......
[http-nio-8080-exec-9] 09 Mar 2021 15:50:48,509 ERROR it.eng.spagobi.rest.interceptors.RestExceptionMapper.toResponse:59 - Catched service error:
javax.ws.rs.NotSupportedException: RESTEASY003065: Cannot consume content type
at org.jboss.resteasy.core.registry.SegmentNode.match(SegmentNode.java:403)
at org.jboss.resteasy.core.registry.SegmentNode.match(SegmentNode.java:137)
at org.jboss.resteasy.core.registry.RootNode.match(RootNode.java:43)
at org.jboss.resteasy.core.registry.RootClassNode.match(RootClassNode.java:48)
at org.jboss.resteasy.core.ResourceMethodRegistry.getResourceInvoker(ResourceMethodRegistry.java:445)
at org.jboss.resteasy.core.SynchronousDispatcher.getInvoker(SynchronousDispatcher.java:260)
at org.jboss.resteasy.core.SynchronousDispatcher.invoke(SynchronousDispatcher.java:197)
at org.jboss.resteasy.plugins.server.servlet.ServletContainerDispatcher.service(ServletContainerDispatcher.java:228)
at org.jboss.resteasy.plugins.server.servlet.HttpServletDispatcher.service(HttpServletDispatcher.java:56)
at org.jboss.resteasy.plugins.server.servlet.HttpServletDispatcher.service(HttpServletDispatcher.java:51)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
at sun.reflect.GeneratedMethodAccessor973.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.catalina.security.SecurityUtil$1.run(SecurityUtil.java:282)
at org.apache.catalina.security.SecurityUtil$1.run(SecurityUtil.java:279)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAsPrivileged(Subject.java:549)
at org.apache.catalina.security.SecurityUtil.execute(SecurityUtil.java:314)
at org.apache.catalina.security.SecurityUtil.doAsPrivilege(SecurityUtil.java:170)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:225)
at org.apache.catalina.core.ApplicationFilterChain.access$000(ApplicationFilterChain.java:47)
at org.apache.catalina.core.ApplicationFilterChain$1.run(ApplicationFilterChain.java:149)
at org.apache.catalina.core.ApplicationFilterChain$1.run(ApplicationFilterChain.java:145)
at java.security.AccessController.doPrivileged(Native Method)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:144)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
at sun.reflect.GeneratedMethodAccessor977.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.catalina.security.SecurityUtil$1.run(SecurityUtil.java:282)
at org.apache.catalina.security.SecurityUtil$1.run(SecurityUtil.java:279)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAsPrivileged(Subject.java:549)
at org.apache.catalina.security.SecurityUtil.execute(SecurityUtil.java:314)
at org.apache.catalina.security.SecurityUtil.doAsPrivilege(SecurityUtil.java:253)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:191)
at org.apache.catalina.core.ApplicationFilterChain.access$000(ApplicationFilterChain.java:47)
at org.apache.catalina.core.ApplicationFilterChain$1.run(ApplicationFilterChain.java:149)
at org.apache.catalina.core.ApplicationFilterChain$1.run(ApplicationFilterChain.java:145)
at java.security.AccessController.doPrivileged(Native Method)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:144)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:198)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:493)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:140)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:81)
at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:650)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:87)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:342)
at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:800)
at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66)
at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:806)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1498)
at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:748)
....

I believe the issue was caused by the limit of DB connections, and max wait in server.xml.
I noticed an error about attributes in the jndi configuration, and updated them.
The freezing has not occurred again, yet.
<!-- KNOWAGE -->
<Resource auth="Container" driverClassName="com.mysql.jdbc.Driver" maxTotal="20" maxIdle="10"
maxWaitMillis="-1" name="jdbc/knowage" type="javax.sql.DataSource"
url="jdbc:mysql://localhost:3306/knowagedb" username="knowageuser" password="knowagepassword" />
<!-- KNOWAGE CACHE -->
<Resource auth="Container" driverClassName="com.mysql.jdbc.Driver" maxTotal="20" maxIdle="4"
maxWaitMillis="30000" name="jdbc/ds_cache" type="javax.sql.DataSource"
url="jdbc:mariadb://localhost:3310/cache" username="root" password="root" />
I've made these changes, along with jmx export to prometheus, and a few memory tweaks to make knowage run better on kubernetes.
Have a look here -
https://github.com/savantly-net/knowage-docker

shared c3p0 connection pool with hibernate and mysql on tomcat

Iam working on a project where i want to configure a shared connection pool with hibernate on tomcat.
The project is already implemented and i have to change it.
It was configured with hibernate and c3p0 connection pool where all jars where in the project itself.
I copied all jar files for connection pooling into the lib folder of tomcat.
c3p0-0.9.5.2.jar
c3p0-oracle-thin-extras-0.9.5.2.jar
mchange-commons-java-0.2.11.jar
mysql-connector-java-5.1.40-bin.jar
in server.xml i made a Resource
<Resource auth="Container"
description="DB Connection"
driverClass="com.mysql.jdbc.Driver"
maxPoolSize="40"
minPoolSize="10"
acquireIncrement="1"
name="jdbc/test"
user="admin"
password="root"
factory="org.apache.naming.factory.BeanFactory"
type="com.mchange.v2.c3p0.ComboPooledDataSource"
jdbcUrl="jdbc:mysql://localhost:3306/testDB" />
<ResourceLink
global="jdbc/test"
name="jdbc/test"
type="javax.sql.DataSource" />
after this i can see my connections created by the pool in phpmyadmin(mysql).
In my web.xml file of my project i created
a resource-ref.`
<resource-ref>
<description>DB Connection</description>
<res-ref-name>jdbc/testDB</res-ref-name>
<res-type>javax.sql.DataSource</res-type>
<res-auth>Container</res-auth>
</resource-ref>
`
And my hibernate.cfg.xml file
`
</hibernate-configuration>
<property name="dialect">org.hibernate.dialect.MySQLDialect</property>
<property name="connection.datasource">java:comp/env/jdbc/testDB</property>
<mapping resource="Database.hbm.xml"/>
</hibernate-configuration>
Thats what i have done till yet. My problem is. In my project i have a sessionfactory where i set my hibernate.cfg.xml and Database.hbm.xml file.
This is now giving me a java.lang.NullPointerException.
Do i have to configure the sessionfactory also on tomcat as resource?
At Tomcat:
Jun 29, 2017 10:06:19 AM org.apache.catalina.mbeans.GlobalResourcesLifecycleListener createMBeans
SCHWERWIEGEND: Exception processing Global JNDI Resources
javax.naming.NamingException: Could not load resource factory class [Root exception is java.lang.ClassNotFoundException: myutil.hibernate.HibernateSessionFactoryTomcatFactory]
at org.apache.naming.factory.ResourceFactory.getObjectInstance(ResourceFactory.java:82)
at javax.naming.spi.NamingManager.getObjectInstance(Unknown Source)
at org.apache.naming.NamingContext.lookup(NamingContext.java:842)
at org.apache.naming.NamingContext.lookup(NamingContext.java:153)
at org.apache.naming.NamingContextBindingsEnumeration.nextElementInternal(NamingContextBindingsEnumeration.java:117)
at org.apache.naming.NamingContextBindingsEnumeration.next(NamingContextBindingsEnumeration.java:71)
at org.apache.naming.NamingContextBindingsEnumeration.next(NamingContextBindingsEnumeration.java:34)
at org.apache.catalina.mbeans.GlobalResourcesLifecycleListener.createMBeans(GlobalResourcesLifecycleListener.java:138)
at org.apache.catalina.mbeans.GlobalResourcesLifecycleListener.createMBeans(GlobalResourcesLifecycleListener.java:145)
at org.apache.catalina.mbeans.GlobalResourcesLifecycleListener.createMBeans(GlobalResourcesLifecycleListener.java:110)
at org.apache.catalina.mbeans.GlobalResourcesLifecycleListener.lifecycleEvent(GlobalResourcesLifecycleListener.java:82)
at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:117)
at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:90)
at org.apache.catalina.util.LifecycleBase.setStateInternal(LifecycleBase.java:402)
at org.apache.catalina.util.LifecycleBase.setState(LifecycleBase.java:347)
at org.apache.catalina.core.StandardServer.startInternal(StandardServer.java:732)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at org.apache.catalina.startup.Catalina.start(Catalina.java:689)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:321)
at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:455)
Caused by: java.lang.ClassNotFoundException: myutil.hibernate.HibernateSessionFactoryTomcatFactory
at java.net.URLClassLoader.findClass(Unknown Source)
at java.lang.ClassLoader.loadClass(Unknown Source)
at java.lang.ClassLoader.loadClass(Unknown Source)
at org.apache.naming.factory.ResourceFactory.getObjectInstance(ResourceFactory.java:80)
... 23 more
Jun 29, 2017 10:06:17 AM org.apache.tomcat.util.digester.Digester endElement
WARNUNG: No rules found matching 'Server/GlobalNamingResources/ResourceLink'.
Jun 29, 2017 10:06:17 AM org.apache.catalina.core.AprLifecycleListener init
INFORMATION: The APR based Apache Tomcat Native library which allows optimal
performance in production environments was not found on the java.library.path:
EDIT
What i have not mentioned, iam using OSGI equinox and a servlet bridge.
everything that i have configured is right, the only thing i had to change in my case was to change my launch.ini
i had:
osgi.parentClassloader=app
osgi.contextClassLoaderParent=app
changing it to
osgi.parentClassloader=app
osgi.contextClassLoaderParent=fwk <--- changed
here a link where i got my help from
also using
java:/comp/env/jdbc/testDB using a slash before comp solved my problem

in your server.xml Change to this :
<Resource auth="Container"
description="DB Connection"
driverClass="com.mysql.jdbc.Driver"
maxPoolSize="40"
minPoolSize="10"
acquireIncrement="1"
name="jdbc/testDB" <!-- change -->
user="admin"
password="root"
factory="org.apache.naming.factory.BeanFactory"
type="com.mchange.v2.c3p0.ComboPooledDataSource"
jdbcUrl="jdbc:mysql://localhost:3306/testDB" />
and :
<ResourceLink
global="jdbc/testDB" <!--change -->
name="jdbc/testDB" <!-- & change -->
type="javax.sql.DataSource" />
And your hibernate.cfg.xml file to
<hibernate-configuration>
<session-factory>
<property name="dialect">org.hibernate.dialect.MySQLDialect</property>
<property name="connection.datasource">java:comp/env/jdbc/testDB</property> <!-- ? -->
<mapping resource="Database.hbm.xml"/>
</session-factory>
</hibernate-configuration>
restart catalina.

osgi.parentClassloader=app
osgi.contextClassLoaderParent=app
changing it to
osgi.parentClassloader=app
osgi.contextClassLoaderParent=fwk <--- changed
here a link where i got my help from when i had NoInitialContextException.
javax.naming.NoInitialContextException:Cannot instantiate class: org.apache.naming.java.javaURLContextFactory (root cause classnotfound for org.apache.naming.java.javaURLContextFactory)
also using java:/comp/env/jdbc/testDB instead of java:comp/env/jdbc/testDB (slash before /comp) solved a different problem i had on the linux tomcat server(JNDI lookup exception):
NameNotFoundException.

Springbatch failing | Could not roll back JDBC transaction

We have several jobs running in springbatch. We restarted the server this morning and afterwards we started having issues with two of the jobs. The BATCH_STEP_EXECUTION table shows the following exit message for each failed execution:
org.springframework.transaction.TransactionSystemException: Could not roll back JDBC transaction; nested exception is com.mysql.jdbc.exceptions.jdbc4.MySQLNonTransientConnectionException: Connection.close() has already been called. Invalid operation in this state.
at org.springframework.jdbc.datasource.DataSourceTransactionManager.doRollback(DataSourceTransactionManager.java:286)
at org.springframework.transaction.support.AbstractPlatformTransactionManager.processRollback(AbstractPlatformTransactionManager.java:846)
at org.springframework.transaction.support.AbstractPlatformTransactionManager.rollback(AbstractPlatformTransactionManager.java:823)
at org.springframework.transaction.support.TransactionTemplate.rollbackOnException(TransactionTemplate.java:162)
at org.springframework.transaction.support.TransactionTemplate.execute(TransactionTemplate.java:135)
at org.springframework.batch.core.step.tasklet.TaskletStep$2.doInChunkContext(TaskletStep.java:267)
at org.springframework.batch.core.scope.context.StepContextRepeatCallback.doInIteration(StepContextRepeatCallback.java:77)
at org.springframework.batch.repeat.support.RepeatTemplate.getNextResult(RepeatTemplate.java:368)
at org.springframework.batch.repeat.support.RepeatTemplate.executeInternal(RepeatTemplate.java:215)
at org.springframework.batch.repeat.support.RepeatTemplate.iterate(RepeatTemplate.java:144)
at org.springframework.batch.core.step.tasklet.TaskletStep.doExecute(TaskletStep.java:253)
at org.springframework.batch.core.step.AbstractStep.execute(AbstractStep.java:195)
at org.springframework.batch.core.job.SimpleStepHandler.handleStep(SimpleStepHandler.java:141)
at org.springframework.batch.core.job.flow.JobFlowExecutor.executeStep(JobFlowExecutor.java:64)
at org.springframework.batch.core.job.flow.support.state.StepState.handle(StepState.java:60)
at org.springframework.batch.core.job.flow.support.SimpleFlow.resume(SimpleFlow.java:151)
at org.springframework.batch.core.job.flow.support.SimpleFlow.start(SimpleFlow.java:130)
at org.springframework.batch.core.job.flow.FlowJob.doExecute(FlowJob.java:135)
at org.springframework.batch.core.job.AbstractJob.execute(AbstractJob.java:301)
at org.springframework.batch.core.launch.support.SimpleJobLauncher$1.run(SimpleJobLauncher.java:134)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.ja
This appears to be in relation to the mysql connection the application is making, however I'm not sure what could have caused this as the application was functioning fine before the reboot. Has anyone stumbled across this before?
EDIT
(caused by message that appears in the logs)
Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLNonTransientConnectionException: Connection.close() has already been called. Invalid operation in this state.
Datasource
javax.sql.DataSource
Connection Pool
Configured in context.xml file with the following format:
<?xml version="1.0" encoding="UTF-8"?>
<Context docBase="webapps/appname" mapperContextRootRedirectEnabled="true" mapperDirectoryRedirectEnabled="true" path="/appname" reloadable="false" >
<Resource name="jdbc/springbatchmeta"
auth="Container"
type="javax.sql.DataSource"
username="${jobmeta.username}"
password="${jobmeta.password}"
driverClassName="${mysql.driverClass}"
url="${jobmeta.url}"
initialSize="2"
maxTotal="20"
maxIdle="10"
minIdle="2"/>
<Resource name="jdbc/firstjob"
auth="Container"
type="javax.sql.DataSource"
username="${firstjob.username}"
password="${firstjob.password}"
driverClassName="${mysql.driverClass}"
url="${firstjob.url}"
initialSize="2"
maxTotal="20"
maxIdle="10"
minIdle="2"/>
<Resource name="jdbc/secondjob"
auth="Container"
type="javax.sql.DataSource"
username="${secondjob.username}"
password="${secondjob.password}"
driverClassName="${secondjob.driverClass}"
url="${secondjob.url}"
initialSize="2"
maxTotal="20"
maxIdle="10"
minIdle="2"/>
</Context>

This issue was caused by the wait-timeout option in mysql being set to 60 seconds, as most of the jobs we are running take over a minute to complete.

NetBeans 7.0.1: Access to Tomcat server has not been authorized

i am a beginner, just started with JSP and am stuck at the starting. please help me out.
i have downloaded catalina.bat and setclasspath.bat in there proper location /tomcat/bin/
but still getting the error of authorization. i have seen a similar post and edited my tomcat-users.xml with this line <user username="root" password="1234" roles="manager-script"/>
but still NOT able to run it successfully.
See the server log for details.
at org.netbeans.modules.j2ee.deployment.devmodules.api.Deployment.deploy(Deployment.java:232)
at org.netbeans.modules.j2ee.ant.Deploy.execute(Deploy.java:106)
at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:291)
at sun.reflect.GeneratedMethodAccessor65.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:601)
at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106)
at org.apache.tools.ant.Task.perform(Task.java:348)
at org.apache.tools.ant.Target.execute(Target.java:390)
at org.apache.tools.ant.Target.performTasks(Target.java:411)
at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1399)
at org.apache.tools.ant.Project.executeTarget(Project.java:1368)
at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:41)
at org.apache.tools.ant.Project.executeTargets(Project.java:1251)
at org.apache.tools.ant.module.bridge.impl.BridgeImpl.run(BridgeImpl.java:284)
at org.apache.tools.ant.module.run.TargetExecutor.run(TargetExecutor.java:539)
at org.netbeans.core.execution.RunClassThread.run(RunClassThread.java:153)
Caused by: java.lang.IllegalStateException: Access to Tomcat server has not been authorized. Set the correct username and password with the "manager-script" role in the Tomcat customizer in the Server Manager.
at org.netbeans.modules.tomcat5.TomcatManagerImpl.list(TomcatManagerImpl.java:398)
at org.netbeans.modules.tomcat5.TomcatManager.modules(TomcatManager.java:639)
at org.netbeans.modules.tomcat5.TomcatManager.getAvailableModules(TomcatManager.java:450)
at org.netbeans.modules.j2ee.deployment.impl.TargetServer.getAvailableTMIDsMap(TargetServer.java:417)
at org.netbeans.modules.j2ee.deployment.impl.TargetServer.checkUndeployForSharedReferences(TargetServer.java:372)
at org.netbeans.modules.j2ee.deployment.impl.TargetServer.checkUndeployForSharedReferences(TargetServer.java:321)
at org.netbeans.modules.j2ee.deployment.impl.TargetServer.checkUndeployForSharedReferences(TargetServer.java:318)
at org.netbeans.modules.j2ee.deployment.impl.TargetServer.processLastTargetModules(TargetServer.java:439)
at org.netbeans.modules.j2ee.deployment.impl.TargetServer.init(TargetServer.java:174)
at org.netbeans.modules.j2ee.deployment.impl.TargetServer.deploy(TargetServer.java:579)
at org.netbeans.modules.j2ee.deployment.devmodules.api.Deployment.deploy(Deployment.java:197)
... 16 more
Caused by: org.netbeans.modules.tomcat5.AuthorizationException
at org.netbeans.modules.tomcat5.TomcatManagerImpl.list(TomcatManagerImpl.java:399)
... 26 more
BUILD FAILED (total time: 11 seconds)
any help on this would be saviour for me, i am pretty much naive on this.
thanx in advance :)

The same server error I had for which I changed the /conf/tomcat-users.xml
STEP 1:
Changing tomcat-users.xml
<tomcat-users>
<role rolename="tomcat"/>
<role rolename="role1"/>
<role rolename="manager-gui"/>
<user password="tomcat" roles="tomcat,manager-gui" username="tomcat"/>
<user password="tomcat" roles="tomcat,role1" username="both"/>
<user password="tomcat" roles="role1" username="role1"/>
<user password="pass" roles="manager-script,admin" username="me"/>
</tomcat-users>
I added two roles manager-script and admin.
You can find further references to roles at Configure Manager
STEP 2:
After adding the role you will need to add those credentials to Netbeans server configuration.
Go to Window -> Services
Select Servers.
Select your tomcat instance and Right click to see Properties.
Now select Connection Tab. Enter the "username" as me and "password" as pass.

Check the proxy settings under Tools > Options in the IDE.
Selecting No Proxy resolved this issue for me.

if you are running windows
goto:
C:\Users\Apostolis\AppData\Roaming\NetBeans\8.0\apache-tomcat-8.0.3.0_base\conf
and there change the tomcat-users accordingly
e.g
<tomcat-users>
<user username="ide" password="Vh4fsrwh" roles="manager-script,admin"/>
</tomcat-users>
After that from Netbeans, when asked enter the username and pass e.g ide,Vh4fsrwh