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kettle7.1 connect to mysql ERROR The driver has not received any packets from the server

I'm studying Pentaho Data Integration 7.1 to connect to MySQL, but I got the error as follows:
Error connecting to database [1] :org.pentaho.di.core.exception.KettleDatabaseException:
Error occurred while trying to connect to the database
Error connecting to database: (using class org.gjt.mm.mysql.Driver)
Communications link failure
The last packet sent successfully to the server was 0 milliseconds ago. The driver has not received any packets from the server.
org.pentaho.di.core.exception.KettleDatabaseException:
Error occurred while trying to connect to the database
Error connecting to database: (using class org.gjt.mm.mysql.Driver)
Communications link failure
The last packet sent successfully to the server was 0 milliseconds ago. The driver has not received any packets from the server.
at org.pentaho.di.core.database.Database.normalConnect(Database.java:472)
at org.pentaho.di.core.database.Database.connect(Database.java:370)
at org.pentaho.di.core.database.Database.connect(Database.java:341)
at org.pentaho.di.core.database.Database.connect(Database.java:331)
at org.pentaho.di.core.database.DatabaseFactory.getConnectionTestReport(DatabaseFactory.java:80)
at org.pentaho.di.core.database.DatabaseMeta.testConnection(DatabaseMeta.java:2783)
at org.pentaho.ui.database.event.DataHandler.testDatabaseConnection(DataHandler.java:597)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.pentaho.ui.xul.impl.AbstractXulDomContainer.invoke(AbstractXulDomContainer.java:313)
at org.pentaho.ui.xul.impl.AbstractXulComponent.invoke(AbstractXulComponent.java:157)
at org.pentaho.ui.xul.impl.AbstractXulComponent.invoke(AbstractXulComponent.java:141)
at org.pentaho.ui.xul.swt.tags.SwtButton.access$500(SwtButton.java:43)
at org.pentaho.ui.xul.swt.tags.SwtButton$4.widgetSelected(SwtButton.java:137)
at org.eclipse.swt.widgets.TypedListener.handleEvent(Unknown Source)
at org.eclipse.swt.widgets.EventTable.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Display.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Widget.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Display.runDeferredEvents(Unknown Source)
at org.eclipse.swt.widgets.Display.readAndDispatch(Unknown Source)
at org.eclipse.jface.window.Window.runEventLoop(Window.java:820)
at org.eclipse.jface.window.Window.open(Window.java:796)
at org.pentaho.di.ui.xul.KettleDialog.show(KettleDialog.java:80)
at org.pentaho.di.ui.xul.KettleDialog.show(KettleDialog.java:47)
at org.pentaho.di.ui.core.database.dialog.XulDatabaseDialog.open(XulDatabaseDialog.java:116)
at org.pentaho.di.ui.core.database.dialog.DatabaseDialog.open(DatabaseDialog.java:60)
at org.pentaho.di.ui.trans.step.BaseStepDialog.showDbDialogUnlessCancelledOrValid(BaseStepDialog.java:779)
at org.pentaho.di.ui.trans.step.BaseStepDialog$EditConnectionListener.widgetSelected(BaseStepDialog.java:1425)
at org.eclipse.swt.widgets.TypedListener.handleEvent(Unknown Source)
at org.eclipse.swt.widgets.EventTable.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Display.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Widget.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Display.runDeferredEvents(Unknown Source)
at org.eclipse.swt.widgets.Display.readAndDispatch(Unknown Source)
at org.pentaho.di.ui.trans.steps.tableinput.TableInputDialog.open(TableInputDialog.java:436)
at org.pentaho.di.ui.spoon.delegates.SpoonStepsDelegate.editStep(SpoonStepsDelegate.java:127)
at org.pentaho.di.ui.spoon.Spoon.editStep(Spoon.java:8766)
at org.pentaho.di.ui.spoon.trans.TransGraph.editStep(TransGraph.java:3217)
at org.pentaho.di.ui.spoon.trans.TransGraph.mouseDoubleClick(TransGraph.java:783)
at org.eclipse.swt.widgets.TypedListener.handleEvent(Unknown Source)
at org.eclipse.swt.widgets.EventTable.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Display.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Widget.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Display.runDeferredEvents(Unknown Source)
at org.eclipse.swt.widgets.Display.readAndDispatch(Unknown Source)
at org.pentaho.di.ui.spoon.Spoon.readAndDispatch(Spoon.java:1366)
at org.pentaho.di.ui.spoon.Spoon.waitForDispose(Spoon.java:8022)
at org.pentaho.di.ui.spoon.Spoon.start(Spoon.java:9277)
at org.pentaho.di.ui.spoon.Spoon.main(Spoon.java:692)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.pentaho.commons.launcher.Launcher.main(Launcher.java:92)
Caused by: org.pentaho.di.core.exception.KettleDatabaseException:
Error connecting to database: (using class org.gjt.mm.mysql.Driver)
Communications link failure
The last packet sent successfully to the server was 0 milliseconds ago. The driver has not received any packets from the server.
at org.pentaho.di.core.database.Database.connectUsingClass(Database.java:585)
at org.pentaho.di.core.database.Database.normalConnect(Database.java:456)
... 55 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure
The last packet sent successfully to the server was 0 milliseconds ago. The driver has not received any packets from the server.
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:407)
at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1116)
at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:346)
at com.mysql.jdbc.ConnectionImpl.coreConnect(ConnectionImpl.java:2334)
at com.mysql.jdbc.ConnectionImpl.connectOneTryOnly(ConnectionImpl.java:2371)
at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2163)
at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:794)
at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:47)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:407)
at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:378)
at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:305)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:247)
at org.pentaho.di.core.database.Database.connectUsingClass(Database.java:567)
... 56 more
Caused by: java.net.SocketException: Network is unreachable: connect
at java.net.DualStackPlainSocketImpl.connect0(Native Method)
at java.net.DualStackPlainSocketImpl.socketConnect(DualStackPlainSocketImpl.java:79)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:172)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at java.net.Socket.connect(Socket.java:538)
at java.net.Socket.<init>(Socket.java:434)
at java.net.Socket.<init>(Socket.java:244)
at com.mysql.jdbc.StandardSocketFactory.connect(StandardSocketFactory.java:254)
at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:295)
... 71 more
Hostname :1
Port :3306
Database name :127.0.0.1
I've changed a lot of MySQL driver versions such as
So many versions
And the port 3306 is opening, server is localhost.
The configuration of 'data-integration\simple-jndi\jdbc.properties' file is as follows
SampleData/type=javax.sql.DataSource
SampleData/driver=org.h2.Driver
SampleData/url=jdbc:h2:file:samples/db/sampledb;IFEXISTS=TRUE
SampleData/user=PENTAHO_USER
SampleData/password=PASSWORD
Quartz/type=javax.sql.DataSource
Quartz/driver=org.hsqldb.jdbcDriver
Quartz/url=jdbc:hsqldb:hsql://localhost/quartz
Quartz/user=pentaho_user
Quartz/password=password
Hibernate/type=javax.sql.DataSource
Hibernate/driver=org.hsqldb.jdbcDriver
Hibernate/url=jdbc:hsqldb:hsql://localhost/hibernate
Hibernate/user=hibuser
Hibernate/password=password
Shark/type=javax.sql.DataSource
Shark/driver=org.hsqldb.jdbcDriver
Shark/url=jdbc:hsqldb:hsql://localhost/shark
Shark/user=sa
Shark/password=
PDI_Operations_Mart/type=javax.sql.DataSource
PDI_Operations_Mart/driver=org.postgresql.Driver
PDI_Operations_Mart/url=jdbc:postgresql://localhost:5432/hibernate?searchpath=pentaho_operations_mart
PDI_Operations_Mart/user=hibuser
PDI_Operations_Mart/password=password
live_logging_info/type=javax.sql.DataSource
live_logging_info/driver=org.postgresql.Driver
live_logging_info/url=jdbc:postgresql://localhost:5432/hibernate?searchpath=pentaho_dilogs
live_logging_info/user=hibuser
live_logging_info/password=password
Mysql/type=javax.sql.DataSource
Mysql/driver=com.mysql.jdbc.Driver
Mysql/url= jdbc:mysql://localhost:3306/mysql
Mysql/username=root
Mysql/password=root

Unable To Connect to External Data Source Via EBS instance

We have a database server hosted on Jealastic PaaS and our java application created in EC2 via EBS. I'm connecting to the Jelastic DB locally via Mysql Workbench and it's working properly. But, while connecting via EBS it's giving the following exception.
I'm not sure from how/where it's replacing the Jelastic Connection String with the following Internal IP 192.168.1.201.I've checked the EC2 instance's security group and they're all open for outbound traffic.
8879 [localhost-startStop-1] ERROR org.hibernate.util.JDBCExceptionReporter - Cannot create PoolableConnectionFactory (Access denied for user 'USER_NAME'#'192.168.1.201' (using password: YES))
Mar 12, 2018 9:25:28 AM org.apache.catalina.core.StandardContext listenerStart
SEVERE: Exception sending context initialized event to listener instance of class com.idsk.optportal.util.OPTGlobalContext
org.springframework.jdbc.UncategorizedSQLException: Hibernate operation: Cannot open connection; uncategorized SQLException for SQL [???]; SQL state [null]; error code [0]; Cannot create PoolableConnectionFactory (Access denied for user 'optuser'#'192.168.1.201' (using password: YES)); nested exception is org.apache.commons.dbcp.SQLNestedException: Cannot create PoolableConnectionFactory (Access denied for user 'optuser'#'192.168.1.201' (using password: YES))
at org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptionTranslator.java:83)
at org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptionTranslator.java:80)
at org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptionTranslator.java:80)
at org.springframework.orm.hibernate3.HibernateAccessor.convertJdbcAccessException(HibernateAccessor.java:424)
at org.springframework.orm.hibernate3.HibernateAccessor.convertHibernateAccessException(HibernateAccessor.java:410)
at org.springframework.orm.hibernate3.HibernateTemplate.doExecute(HibernateTemplate.java:411)
at org.springframework.orm.hibernate3.HibernateTemplate.execute(HibernateTemplate.java:339)
at com.idsk.optportal.dao.catalog.CategoryDaoHibernate.getAllCategories(CategoryDaoHibernate.java:304)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:318)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
at org.springframework.aop.framework.adapter.ThrowsAdviceInterceptor.invoke(ThrowsAdviceInterceptor.java:124)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.adapter.AfterReturningAdviceInterceptor.invoke(AfterReturningAdviceInterceptor.java:50)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.adapter.MethodBeforeAdviceInterceptor.invoke(MethodBeforeAdviceInterceptor.java:50)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at com.idsk.optportal.util.logging.LoggingInterceptor.invoke(LoggingInterceptor.java:47)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at com.sun.proxy.$Proxy50.getAllCategories(Unknown Source)
at com.idsk.optportal.service.company.OPTCompanyService.getAllCategories(OPTCompanyService.java:2065)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:318)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
at org.springframework.aop.framework.adapter.ThrowsAdviceInterceptor.invoke(ThrowsAdviceInterceptor.java:124)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.adapter.AfterReturningAdviceInterceptor.invoke(AfterReturningAdviceInterceptor.java:50)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.adapter.MethodBeforeAdviceInterceptor.invoke(MethodBeforeAdviceInterceptor.java:50)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at com.idsk.optportal.util.logging.LoggingInterceptor.invoke(LoggingInterceptor.java:47)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at com.sun.proxy.$Proxy107.getAllCategories(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:318)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:196)
at com.sun.proxy.$Proxy107.getAllCategories(Unknown Source)
at com.idsk.optportal.util.OPTGlobalContext.contextInitialized(OPTGlobalContext.java:31)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:5109)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5632)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:145)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:1015)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:991)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:652)
at org.apache.catalina.startup.HostConfig.deployDirectory(HostConfig.java:1296)
at org.apache.catalina.startup.HostConfig$DeployDirectory.run(HostConfig.java:2038)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:473)
at java.util.concurrent.FutureTask.run(FutureTask.java:262)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1152)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:622)
at java.lang.Thread.run(Thread.java:748)
Caused by: org.apache.commons.dbcp.SQLNestedException: Cannot create PoolableConnectionFactory (Access denied for user 'USER_NAME'#'192.168.1.201' (using password: YES))
at org.apache.commons.dbcp.BasicDataSource.createDataSource(BasicDataSource.java:855)
at org.apache.commons.dbcp.BasicDataSource.getConnection(BasicDataSource.java:540)
at org.springframework.orm.hibernate3.LocalDataSourceConnectionProvider.getConnection(LocalDataSourceConnectionProvider.java:81)
at org.hibernate.jdbc.ConnectionManager.openConnection(ConnectionManager.java:446)
at org.hibernate.jdbc.ConnectionManager.getConnection(ConnectionManager.java:167)
at org.hibernate.jdbc.AbstractBatcher.prepareQueryStatement(AbstractBatcher.java:161)
at org.hibernate.loader.Loader.prepareQueryStatement(Loader.java:1700)
at org.hibernate.loader.Loader.doQuery(Loader.java:801)
at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:274)
at org.hibernate.loader.Loader.doList(Loader.java:2533)
at org.hibernate.loader.Loader.listIgnoreQueryCache(Loader.java:2276)
at org.hibernate.loader.Loader.list(Loader.java:2271)
at org.hibernate.loader.criteria.CriteriaLoader.list(CriteriaLoader.java:119)
at org.hibernate.impl.SessionImpl.list(SessionImpl.java:1715)
at org.hibernate.impl.CriteriaImpl.list(CriteriaImpl.java:347)
at com.idsk.optportal.dao.catalog.CategoryDaoHibernate$1.doInHibernate(CategoryDaoHibernate.java:306)
at org.springframework.orm.hibernate3.HibernateTemplate.doExecute(HibernateTemplate.java:406)
... 58 more
Caused by: java.sql.SQLException: Access denied for user 'USER_NAME'#'192.168.1.201' (using password: YES)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:1055)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:956)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3558)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3490)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:919)
at com.mysql.jdbc.MysqlIO.secureAuth411(MysqlIO.java:3996)
at com.mysql.jdbc.MysqlIO.doHandshake(MysqlIO.java:1284)
at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2137)
at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:776)
at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:46)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:352)
at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:284)
at org.apache.commons.dbcp.DriverConnectionFactory.createConnection(DriverConnectionFactory.java:37)
at org.apache.commons.dbcp.PoolableConnectionFactory.makeObject(PoolableConnectionFactory.java:290)
at org.apache.commons.dbcp.BasicDataSource.validateConnectionFactory(BasicDataSource.java:877)
at org.apache.commons.dbcp.BasicDataSource.createDataSource(BasicDataSource.java:851)
... 74 more

hive metastore and connection refused errors for getting into hive shell

I am trying to get into hive shell but I get the following errors:
ubuntu#group-3-vm1:~$ cd $HIVE_HOME
ubuntu#group-3-vm1:~/software/hive-1.2.1$
ubuntu#group-3-vm1:~/software/hive-1.2.1$ hive
Logging initialized using configuration in jar:file:/home/ubuntu/software/hive-1.2.1/lib/hive-common-1.2.1.jar!/hive-log4j.properties
Hive history file=/tmp/ubuntu/hive_job_log_6e94701d-7385-4044-a110-9630159476c2_1449551388.txt
SLF4J: Class path contains multiple SLF4J bindings.
SLF4J: Found binding in [jar:file:/home/ubuntu/software/tez-0.7.1-SNAPSHOT-minimal/lib/slf4j-log4j12-1.7.5.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: Found binding in [jar:file:/home/ubuntu/software/hadoop-2.6.0/share/hadoop/common/lib/slf4j-log4j12-1.7.5.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation.
SLF4J: Actual binding is of type [org.slf4j.impl.Log4jLoggerFactory]
Exception in thread "main" java.lang.RuntimeException: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient
at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:522)
at org.apache.hadoop.hive.cli.CliDriver.run(CliDriver.java:677)
at org.apache.hadoop.hive.cli.CliDriver.main(CliDriver.java:621)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.hadoop.util.RunJar.run(RunJar.java:221)
at org.apache.hadoop.util.RunJar.main(RunJar.java:136)
Caused by: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient
at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1523)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:86)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:132)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:104)
at org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:3005)
at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:3024)
at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:503)
... 8 more
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1521)
... 14 more
Caused by: javax.jdo.JDOFatalDataStoreException: Unable to open a test connection to the given database. JDBC url = jdbc:mysql://10.0.1.31:3306/metastore?createDatabaseIfNotExist=true, username = hive. Terminating connection pool (set lazyInit to true if you expect to start your database after your app). Original Exception: ------
com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure
The last packet sent successfully to the server was 0 milliseconds ago. The driver has not received any packets from the server.
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1117)
at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:350)
at com.mysql.jdbc.ConnectionImpl.coreConnect(ConnectionImpl.java:2408)
at com.mysql.jdbc.ConnectionImpl.connectOneTryOnly(ConnectionImpl.java:2445)
at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2230)
at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:813)
at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:47)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:399)
at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:334)
at java.sql.DriverManager.getConnection(DriverManager.java:571)
at java.sql.DriverManager.getConnection(DriverManager.java:187)
at com.jolbox.bonecp.BoneCP.obtainRawInternalConnection(BoneCP.java:361)
at com.jolbox.bonecp.BoneCP.<init>(BoneCP.java:416)
at com.jolbox.bonecp.BoneCPDataSource.getConnection(BoneCPDataSource.java:120)
at org.datanucleus.store.rdbms.ConnectionFactoryImpl$ManagedConnectionImpl.getConnection(ConnectionFactoryImpl.java:501)
at org.datanucleus.store.rdbms.RDBMSStoreManager.<init>(RDBMSStoreManager.java:298)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.datanucleus.plugin.NonManagedPluginRegistry.createExecutableExtension(NonManagedPluginRegistry.java:631)
at org.datanucleus.plugin.PluginManager.createExecutableExtension(PluginManager.java:301)
at org.datanucleus.NucleusContext.createStoreManagerForProperties(NucleusContext.java:1187)
at org.datanucleus.NucleusContext.initialise(NucleusContext.java:356)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.freezeConfiguration(JDOPersistenceManagerFactory.java:775)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.createPersistenceManagerFactory(JDOPersistenceManagerFactory.java:333)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.getPersistenceManagerFactory(JDOPersistenceManagerFactory.java:202)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at javax.jdo.JDOHelper$16.run(JDOHelper.java:1965)
at java.security.AccessController.doPrivileged(Native Method)
at javax.jdo.JDOHelper.invoke(JDOHelper.java:1960)
at javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1166)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701)
at org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:365)
at org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:394)
at org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:291)
at org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:258)
at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:73)
at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133)
at org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:57)
at org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:66)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:593)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:571)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:624)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:461)
at org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:66)
at org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:72)
at org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5762)
at org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:199)
at org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient.<init>(SessionHiveMetaStoreClient.java:74)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1521)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:86)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:132)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:104)
at org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:3005)
at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:3024)
at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:503)
at org.apache.hadoop.hive.cli.CliDriver.run(CliDriver.java:677)
at org.apache.hadoop.hive.cli.CliDriver.main(CliDriver.java:621)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.hadoop.util.RunJar.run(RunJar.java:221)
at org.apache.hadoop.util.RunJar.main(RunJar.java:136)
Caused by: java.net.ConnectException: Connection refused
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:339)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:200)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:182)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:579)
at java.net.Socket.connect(Socket.java:528)
at java.net.Socket.<init>(Socket.java:425)
at java.net.Socket.<init>(Socket.java:241)
at com.mysql.jdbc.StandardSocketFactory.connect(StandardSocketFactory.java:259)
at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:300)
... 76 more
------
NestedThrowables:
java.sql.SQLException: Unable to open a test connection to the given database. JDBC url = jdbc:mysql://10.0.1.31:3306/metastore?createDatabaseIfNotExist=true, username = hive. Terminating connection pool (set lazyInit to true if you expect to start your database after your app). Original Exception: ------
com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure
The last packet sent successfully to the server was 0 milliseconds ago. The driver has not received any packets from the server.
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1117)
at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:350)
at com.mysql.jdbc.ConnectionImpl.coreConnect(ConnectionImpl.java:2408)
at com.mysql.jdbc.ConnectionImpl.connectOneTryOnly(ConnectionImpl.java:2445)
at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2230)
at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:813)
at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:47)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)

Firstly, The error key as following:
Unable to instantiate
org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient at
org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:522).
Have some solution for this error:
Check your configuration file hive-site.xml, you must be ensure some permission valid for file or directory paths.
delete metastore_db directory(if you metastore_db have not important information)
re-run hive shell
Note: you must be ensure hive-site.xml enable to access by hive process.

I got the same error 1st.
What I did was in the /usr/local/hive/conf/ there is a property named hive-log4j2.properties.template. I just renamed it to hive-log4j2.properties, since your hive logs into this property.
Logging initialized using configuration in file:/usr/local/hive/conf/hive-log4j2.properties
I've also deleted the metastore_db directory.
Finally, when I run "HIVE", I get this exception.
I've fixed this exception by removing the (derby database) contents in the "metastore_db"
in,
/usr/local/hive/bin/metastore_db/
sudo rm -rf *
After cleaning the old schema, I reinitializes with:
/usr/local/hive/bin/
$schematool -initSchema -dbType derby
Your /bin directory may vary according to your hive path setup.

java.net.ConnectException: Connection refused apache mysql

i try to run my code on the server using tomcat8, spring4 and maven. Locally is everything fine, but no on the server.
jdbc.driverClassName=com.mysql.jdbc.Driver
jdbc.url=jdbc:mysql://IPADDRESS:3306/streaming
jdbc.username=root
jdbc.password=PWD
hibernate.dialect=org.hibernate.dialect.MySQLDialect
hibernate.showsql=true
hibernate.hbm2ddl.auto=create
With the same user and pwd can i connect to my DB on the server.
Hier is the output my catalina.date.log:
27-Aug-2015 15:10:14.610 SEVERE [http-nio-8080-exec-1] null.null The RuntimeException could not be mapped to a response, re-throwing to the HTTP container
org.springframework.transaction.CannotCreateTransactionException: Could not open JPA EntityManager for transaction; nested exception is javax.persistence.PersistenceException: org.hibernate.exception.JDBCConnectionException: Could not open connection
at org.springframework.orm.jpa.JpaTransactionManager.doBegin(JpaTransactionManager.java:431)
at org.springframework.transaction.support.AbstractPlatformTransactionManager.getTransaction(AbstractPlatformTransactionManager.java:373)
at org.springframework.transaction.interceptor.TransactionAspectSupport.createTransactionIfNecessary(TransactionAspectSupport.java:457)
at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:276)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:207)
at com.sun.proxy.$Proxy80.create(Unknown Source)
at com.eza.server.VideoController.createVideo(VideoController.java:52)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at com.sun.jersey.spi.container.JavaMethodInvokerFactory$1.invoke(JavaMethodInvokerFactory.java:60)
at com.sun.jersey.server.impl.model.method.dispatch.AbstractResourceMethodDispatchProvider$ResponseOutInvoker._dispatch(AbstractResourceMethodDispatchProvider.java:205)
at com.sun.jersey.server.impl.model.method.dispatch.ResourceJavaMethodDispatcher.dispatch(ResourceJavaMethodDispatcher.java:75)
at com.sun.jersey.server.impl.uri.rules.HttpMethodRule.accept(HttpMethodRule.java:302)
at com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:147)
at com.sun.jersey.server.impl.uri.rules.ResourceClassRule.accept(ResourceClassRule.java:108)
at com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:147)
at com.sun.jersey.server.impl.uri.rules.RootResourceClassesRule.accept(RootResourceClassesRule.java:84)
at com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1542)
at com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1473)
at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1419)
at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1409)
at com.sun.jersey.spi.container.servlet.WebComponent.service(WebComponent.java:409)
at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:558)
at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:733)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:729)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:291)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:219)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:106)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:502)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:142)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:79)
at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:610)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:88)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:518)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1091)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:668)
at org.apache.coyote.http11.Http11NioProtocol$Http11ConnectionHandler.process(Http11NioProtocol.java:223)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1517)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:1474)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
Caused by: javax.persistence.PersistenceException: org.hibernate.exception.JDBCConnectionException: Could not open connection
at org.hibernate.jpa.spi.AbstractEntityManagerImpl.convert(AbstractEntityManagerImpl.java:1763)
at org.hibernate.jpa.spi.AbstractEntityManagerImpl.convert(AbstractEntityManagerImpl.java:1677)
at org.hibernate.jpa.spi.AbstractEntityManagerImpl.throwPersistenceException(AbstractEntityManagerImpl.java:1771)
at org.hibernate.jpa.internal.TransactionImpl.begin(TransactionImpl.java:64)
at org.springframework.orm.jpa.vendor.HibernateJpaDialect.beginTransaction(HibernateJpaDialect.java:159)
at org.springframework.orm.jpa.JpaTransactionManager.doBegin(JpaTransactionManager.java:380)
... 50 more
Caused by: org.hibernate.exception.JDBCConnectionException: Could not open connection
at org.hibernate.exception.internal.SQLStateConversionDelegate.convert(SQLStateConversionDelegate.java:132)
at org.hibernate.exception.internal.StandardSQLExceptionConverter.convert(StandardSQLExceptionConverter.java:49)
at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:126)
at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:112)
at org.hibernate.engine.jdbc.internal.LogicalConnectionImpl.obtainConnection(LogicalConnectionImpl.java:235)
at org.hibernate.engine.jdbc.internal.LogicalConnectionImpl.getConnection(LogicalConnectionImpl.java:171)
at org.hibernate.engine.transaction.internal.jdbc.JdbcTransaction.doBegin(JdbcTransaction.java:67)
at org.hibernate.engine.transaction.spi.AbstractTransactionImpl.begin(AbstractTransactionImpl.java:162)
at org.hibernate.internal.SessionImpl.beginTransaction(SessionImpl.java:1435)
at org.hibernate.jpa.internal.TransactionImpl.begin(TransactionImpl.java:61)
... 52 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure
The last packet sent successfully to the server was 0 milliseconds ago. The driver has not received any packets from the server.
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:422)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1121)
at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:357)
at com.mysql.jdbc.ConnectionImpl.coreConnect(ConnectionImpl.java:2482)
at com.mysql.jdbc.ConnectionImpl.connectOneTryOnly(ConnectionImpl.java:2519)
at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2304)
at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:834)
at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:47)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:422)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:416)
at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:346)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:208)
at org.springframework.jdbc.datasource.DriverManagerDataSource.getConnectionFromDriverManager(DriverManagerDataSource.java:153)
at org.springframework.jdbc.datasource.DriverManagerDataSource.getConnectionFromDriver(DriverManagerDataSource.java:144)
at org.springframework.jdbc.datasource.AbstractDriverBasedDataSource.getConnectionFromDriver(AbstractDriverBasedDataSource.java:155)
at org.springframework.jdbc.datasource.AbstractDriverBasedDataSource.getConnection(AbstractDriverBasedDataSource.java:120)
at org.hibernate.engine.jdbc.connections.internal.DatasourceConnectionProviderImpl.getConnection(DatasourceConnectionProviderImpl.java:139)
at org.hibernate.internal.AbstractSessionImpl$NonContextualJdbcConnectionAccess.obtainConnection(AbstractSessionImpl.java:380)
at org.hibernate.engine.jdbc.internal.LogicalConnectionImpl.obtainConnection(LogicalConnectionImpl.java:228)
... 57 more
Caused by: java.net.ConnectException: Connection refused
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at java.net.Socket.connect(Socket.java:538)
at java.net.Socket.<init>(Socket.java:434)
at java.net.Socket.<init>(Socket.java:244)
at com.mysql.jdbc.StandardSocketFactory.connect(StandardSocketFactory.java:259)
at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:307)
... 78 more
A part of my pom.xml with the mysql dependency:
<dependency>
<groupId>mysql</groupId>
<artifactId>mysql-connector-java</artifactId>
<version>5.1.26</version>
</dependency>
Any ideas?
Thank

Make sure you have the necessary user and host combinations visible in select user,host from mysql.user where user='root'
If they are not there for localhost or 127.0.0.1 or IPADDR or hostname then create them with mysql create user command and apply grants.
If the server is DNS blind and you are using a name to connect (DNS blind would not be the case for clients), then figure that angle out. For instance, my client can ping cnn.com, some of my servers cannot.

Look at most embedded exeption: java.net.ConnectException: Connection refused
It means, that there is some problem with network connection, not with the database itself.
Here some hints, which may help you:
make sure, that database is running on the DB server, and that ports are opened (tools like netstat may help);
check, if you can connect to the remote database with other software, for example MySQL Workbench;
check your network connection between peers. It is hard to advise anyhing detailed here, all depends on your network configuration.

How to handle Broken pipe error with Spring, (JPA) Hibernate, MySQL

I have an web application using Spring JPA (Hibernate) and MySQL running in Tomcat.
After period of inactivity I always get this exception:
Caused by: javax.persistence.PersistenceException: org.hibernate.TransactionException: JDBC begin transaction failed:
at org.hibernate.jpa.spi.AbstractEntityManagerImpl.convert(AbstractEntityManagerImpl.java:1763) ~[hibernate-entitymanager-4.3.5.Final.jar:4.3.5.Final]
at org.hibernate.jpa.spi.AbstractEntityManagerImpl.convert(AbstractEntityManagerImpl.java:1677) ~[hibernate-entitymanager-4.3.5.Final.jar:4.3.5.Final]
at org.hibernate.jpa.spi.AbstractEntityManagerImpl.throwPersistenceException(AbstractEntityManagerImpl.java:1771) ~[hibernate-entitymanager-4.3.5.Final.jar:4.3.5.Final]
at org.hibernate.jpa.internal.TransactionImpl.begin(TransactionImpl.java:64) ~[hibernate-entitymanager-4.3.5.Final.jar:4.3.5.Final]
at org.springframework.orm.jpa.DefaultJpaDialect.beginTransaction(DefaultJpaDialect.java:67) ~[spring-orm-4.0.3.RELEASE.jar:4.0.3.RELEASE]
at org.springframework.orm.jpa.JpaTransactionManager.doBegin(JpaTransactionManager.java:380) ~[spring-orm-4.0.3.RELEASE.jar:4.0.3.RELEASE]
... 38 common frames omitted
Caused by: org.hibernate.TransactionException: JDBC begin transaction failed:
at org.hibernate.engine.transaction.internal.jdbc.JdbcTransaction.doBegin(JdbcTransaction.java:76) ~[hibernate-core-4.3.5.Final.jar:4.3.5.Final]
at org.hibernate.engine.transaction.spi.AbstractTransactionImpl.begin(AbstractTransactionImpl.java:162) ~[hibernate-core-4.3.5.Final.jar:4.3.5.Final]
at org.hibernate.internal.SessionImpl.beginTransaction(SessionImpl.java:1435) ~[hibernate-core-4.3.5.Final.jar:4.3.5.Final]
at org.hibernate.jpa.internal.TransactionImpl.begin(TransactionImpl.java:61) ~[hibernate-entitymanager-4.3.5.Final.jar:4.3.5.Final]
... 40 common frames omitted
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: The last packet successfully received from the server was 48,764,262 milliseconds ago. The last packet sent successfully to the server wa
s 48,764,262 milliseconds ago. is longer than the server configured value of 'wait_timeout'. You should consider either expiring and/or testing connection validity before use in your application, increasing
the server configured values for client timeouts, or using the Connector/J connection property 'autoReconnect=true' to avoid this problem.
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) ~[na:1.7.0_55]
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) ~[na:1.7.0_55]
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) ~[na:1.7.0_55]
at java.lang.reflect.Constructor.newInstance(Constructor.java:526) ~[na:1.7.0_55]
at com.mysql.jdbc.Util.handleNewInstance(Util.java:409) ~[mysql-connector-java-5.1.30.jar:na]
at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1127) ~[mysql-connector-java-5.1.30.jar:na]
at com.mysql.jdbc.MysqlIO.send(MysqlIO.java:3983) ~[mysql-connector-java-5.1.30.jar:na]
at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2596) ~[mysql-connector-java-5.1.30.jar:na]
at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2776) ~[mysql-connector-java-5.1.30.jar:na]
at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2832) ~[mysql-connector-java-5.1.30.jar:na]
at com.mysql.jdbc.ConnectionImpl.setAutoCommit(ConnectionImpl.java:5357) ~[mysql-connector-java-5.1.30.jar:na]
at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.setAutoCommit(DelegatingConnection.java:373) ~[commons-dbcp-eap6.jar:na]
at org.apache.tomcat.dbcp.dbcp.PoolingDataSource$PoolGuardConnectionWrapper.setAutoCommit(PoolingDataSource.java:330) ~[commons-dbcp-eap6.jar:na]
at org.hibernate.engine.transaction.internal.jdbc.JdbcTransaction.doBegin(JdbcTransaction.java:72) ~[hibernate-core-4.3.5.Final.jar:4.3.5.Final]
... 43 common frames omitted
Caused by: java.net.SocketException: Broken pipe
at java.net.SocketOutputStream.socketWrite0(Native Method) ~[na:1.7.0_55]
at java.net.SocketOutputStream.socketWrite(SocketOutputStream.java:113) ~[na:1.7.0_55]
at java.net.SocketOutputStream.write(SocketOutputStream.java:159) ~[na:1.7.0_55]
at java.io.BufferedOutputStream.flushBuffer(BufferedOutputStream.java:82) ~[na:1.7.0_55]
at java.io.BufferedOutputStream.flush(BufferedOutputStream.java:140) ~[na:1.7.0_55]
at com.mysql.jdbc.MysqlIO.send(MysqlIO.java:3964) ~[mysql-connector-java-5.1.30.jar:na]
... 50 common frames omitted
Now, I do understand this has to do with MySQL closing the connection after 8 hours and Hibernate trying to use this connection and that my connection pool might not be configured properly or configured at all but I do not know how to do it.
I even added autoReconnect=true to mysql url connection configuration but it did not help.
This is what is in server.xml of the Tomcat configuration.
<Resource name="jdbc/mysqldb" auth="Container"
type="javax.sql.DataSource"
...
url="jdbc:mysql://${env.OPENSHIFT_MYSQL_DB_HOST}:${env.OPENSHIFT_MYSQL_DB_PORT}/${env.OPENSHIFT_APP_NAME}?autoReconnect=true"/>
What and where should be configured to get this working?

Try doing something like this in hibernate configuration:
<property name="connection.autoReconnect"> true </ property>
<property name="connection.autoReconnectForPools"> true </ property>
<property name="connection.is-connection-validation-required"> true </ property>

Try adding testOnBorrow="true" and validationQuery="SELECT 1" validationInterval="60000"
This happens when DB server terminates connections. After adding these parameters, the connection pool will validate the connection before giving it to the application. If it is not valid, the connection will be discarded and a new one will be created.