Develop Reference

Anyone experience PCI Compliance scan create errors in application server?

I'm running GlassFish 3.1.2 behind Apache 2.4.10 web server and mod_jk on CentOS 6 Linux server. I've observed PCI Compliance scans consistently create errors in the GlassFish server.log file, which cause my web app running in GlassFish to become unavailable (file not found). Basically, the web app dies, but the domain continues to run, although it continuously generates errors from that point forward.
Could anyone confirm this is known behavior? If so, are there any known workarounds?
Or, is the only solution to bring my application down for the 1-2 days it takes to run the PCI Compliance scan?
Here are typical errors/warning I see when running such scans (these from GlassFish's server.log file):
[#|2014-11-13T16:09:46.849-0800|WARNING|glassfish3.1.2|org.apache.catalina.connector.Request|_ThreadID=57;_ThreadName=Thread-2;|PWC4011:
Unable to set request character encoding to UTF-8 from context ,
because request parameters have already been read, or
ServletRequest.getReader() has already been called|#]
[#|2014-11-14T11:56:40.218-0800|WARNING|glassfish3.1.2|javax.enterprise.resource.corba.ORBUtil|_ThreadID=515;_ThreadName=Thread-2;|IOP00710020:
Error in GIOP magic org.omg.CORBA.INTERNAL: WARNING: IOP00710020:
Error in GIOP magic vmcid: OMG minor code: 20 completed: Maybe at
sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at
com.sun.corba.ee.spi.orbutil.logex.corba.CorbaExtension.makeException(CorbaExtension.java:248)
at
com.sun.corba.ee.spi.orbutil.logex.corba.CorbaExtension.makeException(CorbaExtension.java:95)
at
com.sun.corba.ee.spi.orbutil.logex.WrapperGenerator.handleFullLogging(WrapperGenerator.java:387)
at
com.sun.corba.ee.spi.orbutil.logex.WrapperGenerator.access$400(WrapperGenerator.java:107)
at
com.sun.corba.ee.spi.orbutil.logex.WrapperGenerator$2.invoke(WrapperGenerator.java:511)
at
com.sun.corba.ee.spi.orbutil.proxy.CompositeInvocationHandlerImpl.invoke(CompositeInvocationHandlerImpl.java:99)
at com.sun.proxy.$Proxy196.giopMagicError(Unknown Source) at
com.sun.corba.ee.impl.protocol.giopmsgheaders.MessageBase.parseGiopHeader(MessageBase.java:201)
at
com.sun.corba.ee.impl.protocol.MessageParserImpl.parseBytes(MessageParserImpl.java:216)
at
com.sun.corba.ee.impl.transport.SocketOrChannelConnectionImpl.parseBytesAndDispatchMessages(SocketOrChannelConnectionImpl.java:1619)
at
com.sun.corba.ee.impl.transport.SocketOrChannelConnectionImpl.doOptimizedReadStrategy(SocketOrChannelConnectionImpl.java:1486)
at
com.sun.corba.ee.impl.transport.SocketOrChannelConnectionImpl.doWork(SocketOrChannelConnectionImpl.java:1084)
at
com.sun.corba.ee.impl.orbutil.threadpool.ThreadPoolImpl$WorkerThread.performWork(ThreadPoolImpl.java:497)
at
com.sun.corba.ee.impl.orbutil.threadpool.ThreadPoolImpl$WorkerThread.run(ThreadPoolImpl.java:540)
|#]
[#|2014-11-14T11:58:57.231-0800|SEVERE|glassfish3.1.2|com.sun.grizzly.config.GrizzlyServiceListener|_ThreadID=53;_ThreadName=Thread-2;|GRIZZLY0051:
ProcessorTask exception. java.lang.IllegalStateException: Invalid
packet magic number: 1603 pos=0 lastValid=166 end=0 at
com.sun.grizzly.http.ajp.AjpInputBuffer.readAjpMessageHeader(AjpInputBuffer.java:90)
at
com.sun.grizzly.http.ajp.AjpProcessorTask.parseRequest(AjpProcessorTask.java:107)
at
com.sun.grizzly.http.ProcessorTask.doProcess(ProcessorTask.java:706)
at
com.sun.grizzly.http.ProcessorTask.process(ProcessorTask.java:1045)
at
com.sun.grizzly.http.DefaultProtocolFilter.execute(DefaultProtocolFilter.java:228)
at
com.sun.grizzly.DefaultProtocolChain.executeProtocolFilter(DefaultProtocolChain.java:137)
at
com.sun.grizzly.DefaultProtocolChain.execute(DefaultProtocolChain.java:104)
at
com.sun.grizzly.DefaultProtocolChain.execute(DefaultProtocolChain.java:90)
at
com.sun.grizzly.http.HttpProtocolChain.execute(HttpProtocolChain.java:79)
at
com.sun.grizzly.ProtocolChainContextTask.doCall(ProtocolChainContextTask.java:54)
at
com.sun.grizzly.SelectionKeyContextTask.call(SelectionKeyContextTask.java:59)
at com.sun.grizzly.ContextTask.run(ContextTask.java:71) at
com.sun.grizzly.util.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:532)
at
com.sun.grizzly.util.AbstractThreadPool$Worker.run(AbstractThreadPool.java:513)
at java.lang.Thread.run(Thread.java:724) |#]
[#|2014-11-14T12:03:28.651-0800|SEVERE|glassfish3.1.2|org.apache.jasper.servlet.JspServlet|_ThreadID=532;_ThreadName=Thread-2;|PWC6117:
File
"/home/glassfish/glassfish3/glassfish/domains/domain1/docroot/login.jsp"
not found|#]
[#|2014-11-14T12:03:29.062-0800|SEVERE|glassfish3.1.2|org.apache.jasper.servlet.JspServlet|_ThreadID=533;_ThreadName=Thread-2;|PWC6117:
File
"/home/glassfish/glassfish3/glassfish/domains/domain1/docroot/spiffymcgee.jsp"
not foun d|#]
[#|2014-11-14T12:03:29.634-0800|SEVERE|glassfish3.1.2|com.sun.grizzly.config.GrizzlyServiceListener|_ThreadID=531;_ThreadName=Thread-2;|GRIZZLY0042:
Error creating internal request. java.lang.NumberFormatException at
com.sun.grizzly.util.buf.Ascii.parseLong(Ascii.java:236) at
com.sun.grizzly.util.buf.ByteChunk.getLong(ByteChunk.java:554) at
com.sun.grizzly.util.buf.MessageBytes.getLong(MessageBytes.java:715)
at com.sun.grizzly.tcp.Request.getContentLengthLong(Request.java:378)
at
com.sun.grizzly.http.ProcessorTask.prepareRequest(ProcessorTask.java:1457)
at
com.sun.grizzly.http.ProcessorTask.parseRequest(ProcessorTask.java:947)
at
com.sun.grizzly.http.ProcessorTask.doProcess(ProcessorTask.java:706)
at
com.sun.grizzly.http.ProcessorTask.process(ProcessorTask.java:1045)
at
com.sun.grizzly.http.DefaultProtocolFilter.execute(DefaultProtocolFilter.java:228)
at
com.sun.grizzly.DefaultProtocolChain.executeProtocolFilter(DefaultProtocolChain.java:137)
at
com.sun.grizzly.DefaultProtocolChain.execute(DefaultProtocolChain.java:104)
at
com.sun.grizzly.DefaultProtocolChain.execute(DefaultProtocolChain.java:90)
at
com.sun.grizzly.http.HttpProtocolChain.execute(HttpProtocolChain.java:79)
at
com.sun.grizzly.ProtocolChainContextTask.doCall(ProtocolChainContextTask.java:54)
at
com.sun.grizzly.SelectionKeyContextTask.call(SelectionKeyContextTask.java:59)
at com.sun.grizzly.ContextTask.run(ContextTask.java:71) at
com.sun.grizzly.util.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:532)
at
com.sun.grizzly.util.AbstractThreadPool$Worker.run(AbstractThreadPool.java:513)
at java.lang.Thread.run(Thread.java:724) |#]
[#|2014-11-14T12:03:34.250-0800|WARNING|glassfish3.1.2|com.sun.grizzly.config.GrizzlyServiceListener|_ThreadID=62;_ThreadName=Thread-2;|Internal
Server error: %. java.io.CharConversionException: EOF at
com.sun.grizzly.util.buf.UDecoder.convert(UDecoder.java:140) at
com.sun.grizzly.util.buf.UDecoder.convert(UDecoder.java:257) at
com.sun.grizzly.util.buf.UDecoder.convert(UDecoder.java:235) at
com.sun.grizzly.util.http.HttpRequestURIDecoder.decode(HttpRequestURIDecoder.java:98)
at
com.sun.enterprise.v3.services.impl.ContainerMapper.lookupHandler(ContainerMapper.java:243)
at
com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:194)
at
com.sun.grizzly.http.ProcessorTask.invokeAdapter(ProcessorTask.java:849)
at
com.sun.grizzly.http.ProcessorTask.doProcess(ProcessorTask.java:746)
at
com.sun.grizzly.http.ProcessorTask.process(ProcessorTask.java:1045)
at
com.sun.grizzly.http.DefaultProtocolFilter.execute(DefaultProtocolFilter.java:228)
at
com.sun.grizzly.DefaultProtocolChain.executeProtocolFilter(DefaultProtocolChain.java:137)
at
com.sun.grizzly.DefaultProtocolChain.execute(DefaultProtocolChain.java:104)
at
com.sun.grizzly.DefaultProtocolChain.execute(DefaultProtocolChain.java:90)
at
com.sun.grizzly.http.HttpProtocolChain.execute(HttpProtocolChain.java:79)
at
com.sun.grizzly.ProtocolChainContextTask.doCall(ProtocolChainContextTask.java:54)
at
com.sun.grizzly.SelectionKeyContextTask.call(SelectionKeyContextTask.java:59)
at com.sun.grizzly.ContextTask.run(ContextTask.java:71) at
com.sun.grizzly.util.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:532)
at
com.sun.grizzly.util.AbstractThreadPool$Worker.run(AbstractThreadPool.java:513)
at java.lang.Thread.run(Thread.java:724) |#]
[#|2014-11-14T12:03:34.427-0800|WARNING|glassfish3.1.2|com.sun.grizzly.config.GrizzlyServiceListener|_ThreadID=57;_ThreadName=Thread-2;|Internal
Server error: %server.policy java.io.CharConversionException:
isHexDigit at
com.sun.grizzly.util.buf.UDecoder.convert(UDecoder.java:145) at
com.sun.grizzly.util.buf.UDecoder.convert(UDecoder.java:257) at
com.sun.grizzly.util.buf.UDecoder.convert(UDecoder.java:235) at
com.sun.grizzly.util.http.HttpRequestURIDecoder.decode(HttpRequestURIDecoder.java:98)
at
com.sun.enterprise.v3.services.impl.ContainerMapper.lookupHandler(ContainerMapper.java:243)
at
com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:194)
at
com.sun.grizzly.http.ProcessorTask.invokeAdapter(ProcessorTask.java:849)
at
com.sun.grizzly.http.ProcessorTask.doProcess(ProcessorTask.java:746)
at
com.sun.grizzly.http.ProcessorTask.process(ProcessorTask.java:1045)
at
com.sun.grizzly.http.DefaultProtocolFilter.execute(DefaultProtocolFilter.java:228)
at
com.sun.grizzly.DefaultProtocolChain.executeProtocolFilter(DefaultProtocolChain.java:137)
at
com.sun.grizzly.DefaultProtocolChain.execute(DefaultProtocolChain.java:104)
at
com.sun.grizzly.DefaultProtocolChain.execute(DefaultProtocolChain.java:90)
at
com.sun.grizzly.http.HttpProtocolChain.execute(HttpProtocolChain.java:79)
at
com.sun.grizzly.ProtocolChainContextTask.doCall(ProtocolChainContextTask.java:54)
at
com.sun.grizzly.SelectionKeyContextTask.call(SelectionKeyContextTask.java:59)
at com.sun.grizzly.ContextTask.run(ContextTask.java:71) at
com.sun.grizzly.util.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:532)
at
com.sun.grizzly.util.AbstractThreadPool$Worker.run(AbstractThreadPool.java:513)
at java.lang.Thread.run(Thread.java:724) |#]

Broker Already Created JMS

I am trying to deploy my application to a Glassfish 3.2 server. When I do, I get the following messages in my logs:
16:01:37.591 [admin-thread-pool-4848(3)] INFO j.resourceadapter.mqjmsra.lifecycle.start - SJSMQ LifecycleManagedBroker configuration=
brokerInstanceName =imqbroker
brokerBindAddress =null
brokerPort =7676
brokerHomeDir =/opt/glassfish3/mq
brokerLibDir =/opt/glassfish3/mq/lib
brokerVarDir =/opt/glassfish3/glassfish/domains/medallion/imq
brokerJavaDir =/usr/java/jdk1.6.0_26/jre
brokerArgs =null
MasterBroker =null
brokerId =null
adminUsername =admin
adminPassword =<default>
adminPassFile =null
ConnectionURL =
dbType =null
dbProps ={}
dsProps ={}
useJNDIRmiServiceURL =true
useSSLJMXConnector =true
brokerEnableHA =false
clusterId =null
rmiRegistryPort =8686
startRmiRegistry =false
brokerStartTimeout = jmxServiceURL =null
60000
Now right after this is where things go a bit crazy:
16:01:37.608 [admin-thread-pool-4848(3)] ERROR j.e.r.r.c.sun.enterprise.connectors.log - RAR6035 : Resource adapter start failed.
javax.resource.spi.ResourceAdapterInternalException: java.security.PrivilegedActionException: javax.resource.spi.ResourceAdapterInternalException: MQJMSRA_RA4001: start:Aborting:Exception starting EMBEDDED broker=Cannot create broker instance. A broker instance is already created.
at com.sun.enterprise.connectors.jms.system.ActiveJmsResourceAdapter.startResourceAdapter(ActiveJmsResourceAdapter.java:373) ~[jms-core.jar:3.1.2.1-SNAPSHOT]
at com.sun.enterprise.connectors.ActiveOutboundResourceAdapter.init(ActiveOutboundResourceAdapter.java:129) ~[connectors-runtime.jar:3.1.2.1-SNAPSHOT]
at com.sun.enterprise.connectors.inbound.ActiveInboundResourceAdapterImpl.init(ActiveInboundResourceAdapterImpl.java:90) [connectors-inbound-runtime.jar:3.1.2.1-SNAPSHOT]
at com.sun.enterprise.connectors.ActiveRAFactory.instantiateActiveResourceAdapter(ActiveRAFactory.java:135) [connectors-runtime.jar:3.1.2.1-SNAPSHOT]
at com.sun.enterprise.connectors.ActiveRAFactory.createActiveResourceAdapter(ActiveRAFactory.java:106) [connectors-runtime.jar:3.1.2.1-SNAPSHOT]
at com.sun.enterprise.connectors.service.ResourceAdapterAdminServiceImpl.createActiveResourceAdapter(ResourceAdapterAdminServiceImpl.java:212) [connectors-runtime.jar:3.1.2.1-SNAPSHOT]
at com.sun.enterprise.connectors.service.ResourceAdapterAdminServiceImpl.createActiveResourceAdapter(ResourceAdapterAdminServiceImpl.java:348) [connectors-runtime.jar:3.1.2.1-SNAPSHOT]
at com.sun.enterprise.connectors.ConnectorRuntime.createActiveResourceAdapter(ConnectorRuntime.java:357) [connectors-runtime.jar:3.1.2.1-SNAPSHOT]
at com.sun.enterprise.connectors.service.ConnectorService.loadDeferredResourceAdapter(ConnectorService.java:183) [connectors-runtime.jar:3.1.2.1-SNAPSHOT]
at com.sun.enterprise.connectors.ConnectorRuntime.loadDeferredResourceAdapter(ConnectorRuntime.java:1262) [connectors-runtime.jar:3.1.2.1-SNAPSHOT]
at com.sun.enterprise.connectors.inbound.ConnectorMessageBeanClient.getActiveResourceAdapter(ConnectorMessageBeanClient.java:286) [connectors-inbound-runtime.jar:3.1.2.1-SNAPSHOT]
at com.sun.enterprise.connectors.inbound.ConnectorMessageBeanClient.setup(ConnectorMessageBeanClient.java:184) [connectors-inbound-runtime.jar:3.1.2.1-SNAPSHOT]
at com.sun.ejb.containers.MessageBeanContainer.(MessageBeanContainer.java:205) [ejb-container.jar:3.1.2.1-SNAPSHOT]
at com.sun.ejb.containers.ContainerFactoryImpl.createContainer(ContainerFactoryImpl.java:121) [ejb-container.jar:3.1.2.1-SNAPSHOT]
at org.glassfish.ejb.startup.EjbApplication.loadContainers(EjbApplication.java:230) [ejb-container.jar:3.1.2.1-SNAPSHOT]
at org.glassfish.ejb.startup.EjbDeployer.load(EjbDeployer.java:305) [ejb-container.jar:3.1.2.1-SNAPSHOT]
at org.glassfish.ejb.startup.EjbDeployer.load(EjbDeployer.java:108) [ejb-container.jar:3.1.2.1-SNAPSHOT]
at org.glassfish.internal.data.ModuleInfo.load(ModuleInfo.java:186) [internal-api.jar:3.1.2.1-SNAPSHOT]
at org.glassfish.internal.data.ApplicationInfo.load(ApplicationInfo.java:264) [internal-api.jar:3.1.2.1-SNAPSHOT]
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:460) [kernel.jar:3.1.2.1-SNAPSHOT]
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:240) [kernel.jar:3.1.2.1-SNAPSHOT]
at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:389) [deployment-admin.jar:3.1.2.1-SNAPSHOT]
at com.sun.enterprise.v3.admin.CommandRunnerImpl$1.execute(CommandRunnerImpl.java:348) [kernel.jar:3.1.2.1-SNAPSHOT]
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:363) [kernel.jar:3.1.2.1-SNAPSHOT]
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1085) [kernel.jar:3.1.2.1-SNAPSHOT]
at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1200(CommandRunnerImpl.java:95) [kernel.jar:3.1.2.1-SNAPSHOT]
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1291) [kernel.jar:3.1.2.1-SNAPSHOT]
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1259) [kernel.jar:3.1.2.1-SNAPSHOT]
at com.sun.enterprise.v3.admin.AdminAdapter.doCommand(AdminAdapter.java:461) [kernel.jar:3.1.2.1-SNAPSHOT]
at com.sun.enterprise.v3.admin.AdminAdapter.service(AdminAdapter.java:212) [kernel.jar:3.1.2.1-SNAPSHOT]
at com.sun.grizzly.tcp.http11.GrizzlyAdapter.service(GrizzlyAdapter.java:179) [grizzly-utils.jar:1.9.50]
at com.sun.enterprise.v3.server.HK2Dispatcher.dispath(HK2Dispatcher.java:117) [kernel.jar:3.1.2.1-SNAPSHOT]
at com.sun.enterprise.v3.services.impl.ContainerMapper$Hk2DispatcherCallable.call(ContainerMapper.java:354) [kernel.jar:3.1.2.1-SNAPSHOT]
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:195) [kernel.jar:3.1.2.1-SNAPSHOT]
at com.sun.grizzly.http.ProcessorTask.invokeAdapter(ProcessorTask.java:860) [grizzly-http.jar:1.9.50]
at com.sun.grizzly.http.ProcessorTask.doProcess(ProcessorTask.java:757) [grizzly-http.jar:1.9.50]
at com.sun.grizzly.http.ProcessorTask.process(ProcessorTask.java:1056) [grizzly-http.jar:1.9.50]
at com.sun.grizzly.http.DefaultProtocolFilter.execute(DefaultProtocolFilter.java:229) [grizzly-http.jar:1.9.50]
at com.sun.grizzly.DefaultProtocolChain.executeProtocolFilter(DefaultProtocolChain.java:137) [grizzly-framework.jar:1.9.50]
at com.sun.grizzly.DefaultProtocolChain.execute(DefaultProtocolChain.java:104) [grizzly-framework.jar:1.9.50]
at com.sun.grizzly.DefaultProtocolChain.execute(DefaultProtocolChain.java:90) [grizzly-framework.jar:1.9.50]
at com.sun.grizzly.http.HttpProtocolChain.execute(HttpProtocolChain.java:79) [grizzly-http.jar:1.9.50]
at com.sun.grizzly.ProtocolChainContextTask.doCall(ProtocolChainContextTask.java:54) [grizzly-framework.jar:1.9.50]
at com.sun.grizzly.SelectionKeyContextTask.call(SelectionKeyContextTask.java:59) [grizzly-framework.jar:1.9.50]
at com.sun.grizzly.ContextTask.run(ContextTask.java:71) [grizzly-framework.jar:1.9.50]
at com.sun.grizzly.util.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:532) [grizzly-utils.jar:1.9.50]
at com.sun.grizzly.util.AbstractThreadPool$Worker.run(AbstractThreadPool.java:513) [grizzly-utils.jar:1.9.50]
at java.lang.Thread.run(Thread.java:662) [na:1.6.0_26]
Caused by: java.security.PrivilegedActionException: null
at java.security.AccessController.doPrivileged(Native Method) ~[na:1.6.0_26]
at com.sun.enterprise.connectors.jms.system.ActiveJmsResourceAdapter.startResourceAdapter(ActiveJmsResourceAdapter.java:357) ~[jms-core.jar:3.1.2.1-SNAPSHOT]
... 47 common frames omitted
Caused by: javax.resource.spi.ResourceAdapterInternalException: MQJMSRA_RA4001: start:Aborting:Exception starting EMBEDDED broker=Cannot create broker instance. A broker instance is already created.
at com.sun.messaging.jms.blc.LifecycleManagedBroker.start(LifecycleManagedBroker.java:458) ~[imqjmsra.jar:na]
at com.sun.messaging.jms.ra.ResourceAdapter.start(ResourceAdapter.java:383) ~[imqjmsra.jar:na]
at com.sun.enterprise.connectors.jms.system.ActiveJmsResourceAdapter$1.run(ActiveJmsResourceAdapter.java:364) ~[jms-core.jar:3.1.2.1-SNAPSHOT]
... 49 common frames omitted
Caused by: java.lang.IllegalAccessException: Cannot create broker instance. A broker instance is already created.
at com.sun.messaging.jmq.jmsclient.runtime.impl.BrokerInstanceImpl.createInstance(BrokerInstanceImpl.java:136) ~[imqjmsra.jar:na]
at com.sun.messaging.jmq.jmsclient.runtime.impl.ClientRuntimeImpl.createBrokerInstance(ClientRuntimeImpl.java:82) ~[imqjmsra.jar:na]
at com.sun.messaging.jms.blc.EmbeddedBrokerRunner.createTheInVMBrokerInstance(EmbeddedBrokerRunner.java:291) ~[imqjmsra.jar:na]
at com.sun.messaging.jms.blc.EmbeddedBrokerRunner.(EmbeddedBrokerRunner.java:130) ~[imqjmsra.jar:na]
at com.sun.messaging.jms.blc.LifecycleManagedBroker.start(LifecycleManagedBroker.java:449) ~[imqjmsra.jar:na]
... 51 common frames omitted
Does anyone have insight on how such a situation could be created? How is it possible that 2 brokers could be created? Google is a bit light on people reporting this issue. Not really sure where to begin.
I am using ActiveMQ, so when it starts talking about an Aborting:Exception starting EMBEDDED in the exception, that is what concerns me.

The solution is simple: Remove the glassfish/domains/domain1/imq/instances/imqbroker/lock file and restart the server.
http://www.adam-bien.com/roller/abien/entry/if_your_glassfish_v2_1

Seems like you are running the Glassfish embedded broker (which is named imqbroker), but want to run the ActiveMQ resource adapter.
I remember, that we had a similar stacktrace when trying to get ActiveMQ running in Glassfish 4.
We got most informative help from this post, but for ActiveMQ in Glassfish 3 there are probably other posts more helpful.
Very important is in any case to set the correct resource adapter.

Parsing error processing resource path struts-config.xml

I have a Dynamic Web Project Java in Eclipse, and I always could deploy this project with glassfish in localhost. I recently got a new PC, and I pull the repository, so everything is the same in my new PC, but now, I get this error when I try to deploy the application:
SEVERE: WebModule[/3dembenchmark]PWC1396: Servlet /3dembenchmark threw load() exceptionjavax.servlet.UnavailableException: Parsing error processing resource path /WEB-INF/classes/config/struts/struts-config.xml
at org.apache.struts.action.ActionServlet.handleConfigException(ActionServlet.java:769)
at org.apache.struts.action.ActionServlet.parseModuleConfigFile(ActionServlet.java:743)
at org.apache.struts.action.ActionServlet.initModuleConfig(ActionServlet.java:687)
at org.apache.struts.action.ActionServlet.init(ActionServlet.java:333)
at javax.servlet.GenericServlet.init(GenericServlet.java:244)
at org.apache.catalina.core.StandardWrapper.initServlet(StandardWrapper.java:1453)
at org.apache.catalina.core.StandardWrapper.load(StandardWrapper.java:1250)
at org.apache.catalina.core.StandardContext.loadOnStartup(StandardContext.java:5093)
at org.apache.catalina.core.StandardContext.start(StandardContext.java:5380)
at com.sun.enterprise.web.WebModule.start(WebModule.java:498)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:917)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:901)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:733)
at com.sun.enterprise.web.WebContainer.loadWebModule(WebContainer.java:2019)
at com.sun.enterprise.web.WebContainer.loadWebModule(WebContainer.java:1669)
at com.sun.enterprise.web.WebApplication.start(WebApplication.java:109)
at org.glassfish.internal.data.EngineRef.start(EngineRef.java:130)
at org.glassfish.internal.data.ModuleInfo.start(ModuleInfo.java:269)
at org.glassfish.internal.data.ApplicationInfo.start(ApplicationInfo.java:301)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:461)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:240)
at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:389)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$1.execute(CommandRunnerImpl.java:348)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:363)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1085)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1200(CommandRunnerImpl.java:95)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1291)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1259)
at com.sun.enterprise.v3.admin.AdminAdapter.doCommand(AdminAdapter.java:461)
at com.sun.enterprise.v3.admin.AdminAdapter.service(AdminAdapter.java:212)
at com.sun.grizzly.tcp.http11.GrizzlyAdapter.service(GrizzlyAdapter.java:179)
at com.sun.enterprise.v3.server.HK2Dispatcher.dispath(HK2Dispatcher.java:117)
at com.sun.enterprise.v3.services.impl.ContainerMapper$Hk2DispatcherCallable.call(ContainerMapper.java:354)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:195)
at com.sun.grizzly.http.ProcessorTask.invokeAdapter(ProcessorTask.java:860)
at com.sun.grizzly.http.ProcessorTask.doProcess(ProcessorTask.java:757)
at com.sun.grizzly.http.ProcessorTask.process(ProcessorTask.java:1056)
at com.sun.grizzly.http.DefaultProtocolFilter.execute(DefaultProtocolFilter.java:229)
at com.sun.grizzly.DefaultProtocolChain.executeProtocolFilter(DefaultProtocolChain.java:137)
at com.sun.grizzly.DefaultProtocolChain.execute(DefaultProtocolChain.java:104)
at com.sun.grizzly.DefaultProtocolChain.execute(DefaultProtocolChain.java:90)
at com.sun.grizzly.http.HttpProtocolChain.execute(HttpProtocolChain.java:79)
at com.sun.grizzly.ProtocolChainContextTask.doCall(ProtocolChainContextTask.java:54)
at com.sun.grizzly.SelectionKeyContextTask.call(SelectionKeyContextTask.java:59)
at com.sun.grizzly.ContextTask.run(ContextTask.java:71)
at com.sun.grizzly.util.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:532)
at com.sun.grizzly.util.AbstractThreadPool$Worker.run(AbstractThreadPool.java:513)
at java.lang.Thread.run(Thread.java:679)
I am using the same Java compiler (openjdk 1.6) and I think everything is with the same configuration. The file struts-config.xml hasn't been changed, and in my other laptop is working.
Permissions in all the files and directories are also the same.
Where is the problem? What else can I check?
Thanks in advance!

In struts-config.xml file
<?xml version="1.0" encoding="ISO-8859-1" ?>
<!DOCTYPE struts-config PUBLIC
"-//Apache Software Foundation//DTD Struts Configuration 1.3//EN"
"http://jakarta.apache.org/struts/dtds/struts-config_1_3.dtd">
<struts-config>
to
<?xml version="1.0" encoding="ISO-8859-1" ?>
<!DOCTYPE struts-config PUBLIC
"-//Apache Software Foundation//DTD Struts Configuration 1.3//EN"
"struts-config_1_3.dtd">
<struts-config>
and download the struts-config_1.3.dtd from the below location and keep it inside the WEB-INF folder.
https://raw.githubusercontent.com/apache/struts-site/master/source/dtds/struts-config_1_3.dtd
Note: It's also working for other struts-config_1_1.dtd and struts-config_1_2.dtd, In my local system i tried it for struts-config_1_3.dtd

Error ocurred during deployment JSF-Spring app

hi I am using eclipse indigo and glassfish 3.1.2 and i am getting this exception while deploying my web app. I have added latest spring-web-3.0.2.RELEASE.jar to my build path also, but problem still there: here is the exception
cannot Deploy jsfspring
Deployment Error for module: jsfspring: Error occurred during deployment: Exception while loading the app : java.lang.IllegalStateException: ContainerBase.addChild: start: org.apache.catalina.LifecycleException: java.lang.IllegalArgumentException: java.lang.ClassNotFoundException: org.springframework.web.context.ContextLoaderListener. Please see server.log for more details.
this is exception details:
SEVERE: ContainerBase.addChild: start:
org.apache.catalina.LifecycleException: java.lang.IllegalArgumentException: java.lang.ClassNotFoundException: org.springframework.web.context.ContextLoaderListener
at org.apache.catalina.core.StandardContext.start(StandardContext.java:5332)
at com.sun.enterprise.web.WebModule.start(WebModule.java:498)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:917)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:901)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:733)
at com.sun.enterprise.web.WebContainer.loadWebModule(WebContainer.java:2018)
at com.sun.enterprise.web.WebContainer.loadWebModule(WebContainer.java:1669)
at com.sun.enterprise.web.WebApplication.start(WebApplication.java:109)
at org.glassfish.internal.data.EngineRef.start(EngineRef.java:130)
at org.glassfish.internal.data.ModuleInfo.start(ModuleInfo.java:269)
at org.glassfish.internal.data.ApplicationInfo.start(ApplicationInfo.java:301)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:461)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:240)
at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:389)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$1.execute(CommandRunnerImpl.java:348)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:363)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1085)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1200(CommandRunnerImpl.java:95)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1291)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1259)
at com.sun.enterprise.v3.admin.AdminAdapter.doCommand(AdminAdapter.java:461)
at com.sun.enterprise.v3.admin.AdminAdapter.service(AdminAdapter.java:212)
at com.sun.grizzly.tcp.http11.GrizzlyAdapter.service(GrizzlyAdapter.java:179)
at com.sun.enterprise.v3.server.HK2Dispatcher.dispath(HK2Dispatcher.java:117)
at com.sun.enterprise.v3.services.impl.ContainerMapper$Hk2DispatcherCallable.call(ContainerMapper.java:354)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:195)
at com.sun.grizzly.http.ProcessorTask.invokeAdapter(ProcessorTask.java:849)
at com.sun.grizzly.http.ProcessorTask.doProcess(ProcessorTask.java:746)
at com.sun.grizzly.http.ProcessorTask.process(ProcessorTask.java:1045)
at com.sun.grizzly.http.DefaultProtocolFilter.execute(DefaultProtocolFilter.java:228)
at com.sun.grizzly.DefaultProtocolChain.executeProtocolFilter(DefaultProtocolChain.java:137)
at com.sun.grizzly.DefaultProtocolChain.execute(DefaultProtocolChain.java:104)
at com.sun.grizzly.DefaultProtocolChain.execute(DefaultProtocolChain.java:90)
at com.sun.grizzly.http.HttpProtocolChain.execute(HttpProtocolChain.java:79)
at com.sun.grizzly.ProtocolChainContextTask.doCall(ProtocolChainContextTask.java:54)
at com.sun.grizzly.SelectionKeyContextTask.call(SelectionKeyContextTask.java:59)
at com.sun.grizzly.ContextTask.run(ContextTask.java:71)
at com.sun.grizzly.util.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:532)
at com.sun.grizzly.util.AbstractThreadPool$Worker.run(AbstractThreadPool.java:513)
at java.lang.Thread.run(Thread.java:722)
Caused by: java.lang.IllegalArgumentException: java.lang.ClassNotFoundException: org.springframework.web.context.ContextLoaderListener
at org.apache.catalina.core.StandardContext.addListener(StandardContext.java:2743)
at org.apache.catalina.core.StandardContext.addApplicationListener(StandardContext.java:1966)
at com.sun.enterprise.web.TomcatDeploymentConfig.configureApplicationListener(TomcatDeploymentConfig.java:235)
at com.sun.enterprise.web.TomcatDeploymentConfig.configureWebModule(TomcatDeploymentConfig.java:94)
at com.sun.enterprise.web.WebModuleContextConfig.start(WebModuleContextConfig.java:274)
at com.sun.enterprise.web.WebModuleContextConfig.lifecycleEvent(WebModuleContextConfig.java:172)
at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:149)
at org.apache.catalina.core.StandardContext.start(StandardContext.java:5329)
... 39 more
Caused by: java.lang.ClassNotFoundException: org.springframework.web.context.ContextLoaderListener
at org.glassfish.web.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1509)
at org.glassfish.web.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1359)
at org.apache.catalina.core.StandardContext.loadListener(StandardContext.java:4806)
at com.sun.enterprise.web.WebModule.loadListener(WebModule.java:1599)
at org.apache.catalina.core.StandardContext.addListener(StandardContext.java:2740)
... 46 more
WARNING: java.lang.IllegalStateException: ContainerBase.addChild: start: org.apache.catalina.LifecycleException: java.lang.IllegalArgumentException: java.lang.ClassNotFoundException: org.springframework.web.context.ContextLoaderListener
java.lang.IllegalStateException: ContainerBase.addChild: start: org.apache.catalina.LifecycleException: java.lang.IllegalArgumentException: java.lang.ClassNotFoundException: org.springframework.web.context.ContextLoaderListener
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:921)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:901)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:733)
at com.sun.enterprise.web.WebContainer.loadWebModule(WebContainer.java:2018)
at com.sun.enterprise.web.WebContainer.loadWebModule(WebContainer.java:1669)
at com.sun.enterprise.web.WebApplication.start(WebApplication.java:109)
at org.glassfish.internal.data.EngineRef.start(EngineRef.java:130)
at org.glassfish.internal.data.ModuleInfo.start(ModuleInfo.java:269)
at org.glassfish.internal.data.ApplicationInfo.start(ApplicationInfo.java:301)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:461)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:240)
at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:389)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$1.execute(CommandRunnerImpl.java:348)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:363)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1085)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1200(CommandRunnerImpl.java:95)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1291)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1259)
at com.sun.enterprise.v3.admin.AdminAdapter.doCommand(AdminAdapter.java:461)
at com.sun.enterprise.v3.admin.AdminAdapter.service(AdminAdapter.java:212)
at com.sun.grizzly.tcp.http11.GrizzlyAdapter.service(GrizzlyAdapter.java:179)
at com.sun.enterprise.v3.server.HK2Dispatcher.dispath(HK2Dispatcher.java:117)
at com.sun.enterprise.v3.services.impl.ContainerMapper$Hk2DispatcherCallable.call(ContainerMapper.java:354)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:195)
at com.sun.grizzly.http.ProcessorTask.invokeAdapter(ProcessorTask.java:849)
at com.sun.grizzly.http.ProcessorTask.doProcess(ProcessorTask.java:746)
at com.sun.grizzly.http.ProcessorTask.process(ProcessorTask.java:1045)
at com.sun.grizzly.http.DefaultProtocolFilter.execute(DefaultProtocolFilter.java:228)
at com.sun.grizzly.DefaultProtocolChain.executeProtocolFilter(DefaultProtocolChain.java:137)
at com.sun.grizzly.DefaultProtocolChain.execute(DefaultProtocolChain.java:104)
at com.sun.grizzly.DefaultProtocolChain.execute(DefaultProtocolChain.java:90)
at com.sun.grizzly.http.HttpProtocolChain.execute(HttpProtocolChain.java:79)
at com.sun.grizzly.ProtocolChainContextTask.doCall(ProtocolChainContextTask.java:54)
at com.sun.grizzly.SelectionKeyContextTask.call(SelectionKeyContextTask.java:59)
at com.sun.grizzly.ContextTask.run(ContextTask.java:71)
at com.sun.grizzly.util.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:532)
at com.sun.grizzly.util.AbstractThreadPool$Worker.run(AbstractThreadPool.java:513)
at java.lang.Thread.run(Thread.java:722)
SEVERE: Exception while invoking class com.sun.enterprise.web.WebApplication start method
java.lang.Exception: java.lang.IllegalStateException: ContainerBase.addChild: start: org.apache.catalina.LifecycleException: java.lang.IllegalArgumentException: java.lang.ClassNotFoundException: org.springframework.web.context.ContextLoaderListener
at com.sun.enterprise.web.WebApplication.start(WebApplication.java:138)
at org.glassfish.internal.data.EngineRef.start(EngineRef.java:130)
at org.glassfish.internal.data.ModuleInfo.start(ModuleInfo.java:269)
at org.glassfish.internal.data.ApplicationInfo.start(ApplicationInfo.java:301)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:461)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:240)
at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:389)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$1.execute(CommandRunnerImpl.java:348)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:363)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1085)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1200(CommandRunnerImpl.java:95)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1291)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1259)
at com.sun.enterprise.v3.admin.AdminAdapter.doCommand(AdminAdapter.java:461)
at com.sun.enterprise.v3.admin.AdminAdapter.service(AdminAdapter.java:212)
at com.sun.grizzly.tcp.http11.GrizzlyAdapter.service(GrizzlyAdapter.java:179)
at com.sun.enterprise.v3.server.HK2Dispatcher.dispath(HK2Dispatcher.java:117)
at com.sun.enterprise.v3.services.impl.ContainerMapper$Hk2DispatcherCallable.call(ContainerMapper.java:354)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:195)
at com.sun.grizzly.http.ProcessorTask.invokeAdapter(ProcessorTask.java:849)
at com.sun.grizzly.http.ProcessorTask.doProcess(ProcessorTask.java:746)
at com.sun.grizzly.http.ProcessorTask.process(ProcessorTask.java:1045)
at com.sun.grizzly.http.DefaultProtocolFilter.execute(DefaultProtocolFilter.java:228)
at com.sun.grizzly.DefaultProtocolChain.executeProtocolFilter(DefaultProtocolChain.java:137)
at com.sun.grizzly.DefaultProtocolChain.execute(DefaultProtocolChain.java:104)
at com.sun.grizzly.DefaultProtocolChain.execute(DefaultProtocolChain.java:90)
at com.sun.grizzly.http.HttpProtocolChain.execute(HttpProtocolChain.java:79)
at com.sun.grizzly.ProtocolChainContextTask.doCall(ProtocolChainContextTask.java:54)
at com.sun.grizzly.SelectionKeyContextTask.call(SelectionKeyContextTask.java:59)
at com.sun.grizzly.ContextTask.run(ContextTask.java:71)
at com.sun.grizzly.util.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:532)
at com.sun.grizzly.util.AbstractThreadPool$Worker.run(AbstractThreadPool.java:513)
at java.lang.Thread.run(Thread.java:722)
SEVERE: Exception while loading the app
SEVERE: Exception while loading the app : java.lang.IllegalStateException: ContainerBase.addChild: start: org.apache.catalina.LifecycleException: java.lang.IllegalArgumentException: java.lang.ClassNotFoundException: org.springframework.web.context.ContextLoaderListener

Is your glassfish running the same java version as your project? I had this problem when running glassfish on 1.6 but my project used 1.7. Check your java environment variables. Restart glassfish using the java version your project needs.

As mentioned in one of the answers, and posts:
For what it's worth, running a spring app from within eclipse can be a
very frustrating experience, especially when insisting on the latest
and greatest + maven. I found that the Maven dependencies are not
included in WEB-INF/lib unless the project is configured as shown in
the attached screenie. May it save you precious development time!
Happy Hacking!!! !
To add in Eclipse:
Go to Project Properties > Deployment Assembly > Add > Java Build Path Entries
Select Maven Dependencies

I use netbeans 7.3 + glassfish 3.1.2.2 + spring 3.2.2 + maven.
In process of upgrading my project to spring 3.2.2 there was similar error "...java.lang.IllegalStateException: ContainerBase.addChild.. blah-blah"
Historically my local .m2 folder is dirty of old spring 3.0.7, 3.1.1 and etc.
After some upgrades my project.war:WEB-INF/lib became full of spring 3.0.7, 3.1.1, 3.2.2 copies.
Solution in may case is:
ensure that all dependencies have appropriate versions (spring 3.2.2
based)
clean maven /.m2 (at least
repository/org/springframework)
clean project or remove target build
folder.
look at project.war:WEB-INF/lib - in my war all spring libraries are 3.2.2-versioned and glassfish deployment is Ok.

Maybe your libraries are not deployed to the server. Check inside glassfish if the libraries are deployed properly.
Look here also.

Just for people that might be running into this exception as well, this could be caused as well by a web service method that returns a type not supported by JAX-WS. In my case I had a method that returned HashMap, which is not supported by JAX-WS.
"JAX-WS delegates the mapping of Java programming language types to and from XML definitions to JAXB. Application developers don’t need to know the details of these mappings but should be aware that not every class in the Java language can be used as a method parameter or return type in JAX-WS."
next we have a list of Schema-to-Java mappings:
**XML Schema Type** **Java Data Type**
xsd:string java.lang.String
xsd:integer java.math.BigInteger
xsd:int int
xsd.long long
xsd:short short
xsd:decimal java.math.BigDecimal
xsd:float float
xsd:double double
xsd:boolean boolean
xsd:byte byte
xsd:QName javax.xml.namespace.QName
xsd:dateTime javax.xml.datatype.XMLGregorianCalendar
xsd:base64Binary byte[]
xsd:hexBinary byte[]
xsd:unsignedInt long
xsd:unsignedShort int
xsd:unsignedByte short
xsd:time javax.xml.datatype.XMLGregorianCalendar
xsd:date javax.xml.datatype.XMLGregorianCalendar
xsd:g javax.xml.datatype.XMLGregorianCalendar
xsd:anySimpleType java.lang.Object
xsd:anySimpleType java.lang.String
xsd:duration javax.xml.datatype.Duration
xsd:NOTATION javax.xml.namespace.QName
and Java-to-Schema mappings:
Java Class XML Data Type
java.lang.String xs:string
java.math.BigInteger xs:integer
java.math.BigDecimal xs:decimal
java.util.Calendar xs:dateTime
java.util.Date xs:dateTime
javax.xml.namespace.QName xs:QName
java.net.URI xs:string
javax.xml.datatype.XMLGregorianCalendar xs:anySimpleType
javax.xml.datatype.Duration xs:duration
java.lang.Object xs:anyType
java.awt.Image xs:base64Binary
javax.activation.DataHandler xs:base64Binary
javax.xml.transform.Source xs:base64Binary
java.util.UUID xs:string
if the return value on your web method is not listed above, you have to find a work around.

NoSuchMethodException during deploying

I am using glassfish 3.1.2.2 server and idea ultimate edition 11 (on Ubuntu 12.04). While I am deploying my ear project there is an exception, first nullpointer then nosuchmethod.
On 3.0.1 of glassfish it works, but in 3.1.2 doesnot.
Server log:
[#|2012-09-25T15:54:14.356+0300|WARNING|glassfish3.1.2|javax.enterprise.system.tools.deployment.org.glassfish.deployment.common|_ThreadID=45;_ThreadName=Thread-2;|DPL8027: Ignore WEB-INF/sun-web.xml in archive /home/kelevra/glassfish3/glassfish/domains/domain1/applications/MO-1.0.1-alpha1-SNAPSHOT/ViewController-1.0.1-alpha1-SNAPSHOT_war/, as GlassFish counterpart runtime xml WEB-INF/glassfish-web.xml is present in the same archive.|#]
[#|2012-09-25T15:54:14.565+0300|WARNING|glassfish3.1.2|javax.enterprise.resource.resourceadapter.com.sun.enterprise.connectors.util|_ThreadID=45;_ThreadName=Thread-2;|RAR8068: Using default datasource : __ds_jdbc_ra for pool : eFarmer-Pool|#]
[#|2012-09-25T15:54:14.591+0300|SEVERE|glassfish3.1.2|javax.enterprise.system.tools.deployment.org.glassfish.deployment.common|_ThreadID=78;_ThreadName=Thread-2;|Exception while visiting com/sun/gjc/util/SQLTraceTimerTask.class of size 570
java.lang.NullPointerException
at org.glassfish.hk2.classmodel.reflect.impl.TypesImpl.getType(TypesImpl.java:78)
at org.glassfish.hk2.classmodel.reflect.impl.ModelClassVisitor.visit(ModelClassVisitor.java:119)
at org.objectweb.asm.ClassReader.accept(Unknown Source)
at org.objectweb.asm.ClassReader.accept(Unknown Source)
at org.glassfish.hk2.classmodel.reflect.Parser$5.on(Parser.java:363)
at org.glassfish.hk2.classmodel.reflect.util.JarArchive.onSelectedEntries(JarArchive.java:125)
at org.glassfish.hk2.classmodel.reflect.Parser.doJob(Parser.java:348)
at org.glassfish.hk2.classmodel.reflect.Parser.access$300(Parser.java:70)
at org.glassfish.hk2.classmodel.reflect.Parser$3.call(Parser.java:307)
at org.glassfish.hk2.classmodel.reflect.Parser$3.call(Parser.java:296)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334)
at java.util.concurrent.FutureTask.run(FutureTask.java:166)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603)
at java.lang.Thread.run(Thread.java:722)
|#]
[#|2012-09-25T15:54:14.965+0300|WARNING|glassfish3.1.2|javax.enterprise.resource.resourceadapter.com.sun.enterprise.connectors.util|_ThreadID=45;_ThreadName=Thread-2;|RAR8068: Using default datasource : __ds_jdbc_ra for pool : eFarmer-Pool|#]
[#|2012-09-25T15:54:17.224+0300|WARNING|glassfish3.1.2|org.eclipse.persistence.session.file:/home/kelevra/glassfish3/glassfish/domains/domain1/applications/MO-1.0.1-alpha1-SNAPSHOT/DataModel-1.0.1-alpha1-SNAPSHOT_jar/_eFarmer.weaver|_ThreadID=45;_ThreadName=Thread-2;|Weaver encountered an exception while trying to weave class com/km/orgfrm/datamodel/entity/AbstractEntity. The exception was: java.lang.RuntimeException: java.lang.ClassNotFoundException: com.km.orgfrm.datamodel.entity.AbstractEntity not found by org.eclipse.persistence.asm [232]|#]
java.lang.NoSuchMethodError: com.km.orgfrm.datamodel.entity.AbstractEntity.<init>(Lorg/eclipse/persistence/internal/descriptors/PersistenceObject;)V
at com.km.efarmer.datamodel.entity.order.operation.OperationTrackGeometryEntity.<init>(OperationTrackGeometryEntity.java)
at com.km.efarmer.datamodel.entity.order.operation.OperationTrackGeometryEntity._persistence_new(OperationTrackGeometryEntity.java)
at org.eclipse.persistence.internal.descriptors.PersistenceObjectInstantiationPolicy.buildNewInstance(PersistenceObjectInstantiationPolicy.java:30)
at org.eclipse.persistence.descriptors.ClassDescriptor.selfValidationAfterInitialization(ClassDescriptor.java:3870)
at org.eclipse.persistence.descriptors.ClassDescriptor.validateAfterInitialization(ClassDescriptor.java:5688)
at org.eclipse.persistence.descriptors.ClassDescriptor.postInitialize(ClassDescriptor.java:3547)
at org.eclipse.persistence.internal.sessions.DatabaseSessionImpl.initializeDescriptors(DatabaseSessionImpl.java:526)
at org.eclipse.persistence.internal.sessions.DatabaseSessionImpl.initializeDescriptors(DatabaseSessionImpl.java:476)
at org.eclipse.persistence.internal.sessions.DatabaseSessionImpl.initializeDescriptors(DatabaseSessionImpl.java:435)
at org.eclipse.persistence.internal.sessions.DatabaseSessionImpl.postConnectDatasource(DatabaseSessionImpl.java:676)
at org.eclipse.persistence.internal.sessions.DatabaseSessionImpl.login(DatabaseSessionImpl.java:634)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryProvider.login(EntityManagerFactoryProvider.java:208)
at org.eclipse.persistence.internal.jpa.EntityManagerSetupImpl.deploy(EntityManagerSetupImpl.java:488)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryDelegate.getDatabaseSession(EntityManagerFactoryDelegate.java:188)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryDelegate.createEntityManagerImpl(EntityManagerFactoryDelegate.java:277)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryImpl.createEntityManagerImpl(EntityManagerFactoryImpl.java:294)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryImpl.createEntityManager(EntityManagerFactoryImpl.java:272)
at org.glassfish.persistence.jpa.PersistenceUnitLoader.loadPU(PersistenceUnitLoader.java:211)
at org.glassfish.persistence.jpa.PersistenceUnitLoader.<init>(PersistenceUnitLoader.java:120)
at org.glassfish.persistence.jpa.JPADeployer$1.visitPUD(JPADeployer.java:224)
at org.glassfish.persistence.jpa.JPADeployer$PersistenceUnitDescriptorIterator.iteratePUDs(JPADeployer.java:495)
at org.glassfish.persistence.jpa.JPADeployer.createEMFs(JPADeployer.java:233)
at org.glassfish.persistence.jpa.JPADeployer.prepare(JPADeployer.java:168)
at com.sun.enterprise.v3.server.ApplicationLifecycle.prepareModule(ApplicationLifecycle.java:871)
at org.glassfish.javaee.full.deployment.EarDeployer.prepareBundle(EarDeployer.java:290)
at org.glassfish.javaee.full.deployment.EarDeployer.access$200(EarDeployer.java:86)
at org.glassfish.javaee.full.deployment.EarDeployer$1.doBundle(EarDeployer.java:141)
at org.glassfish.javaee.full.deployment.EarDeployer$1.doBundle(EarDeployer.java:138)
at org.glassfish.javaee.full.deployment.EarDeployer.doOnBundles(EarDeployer.java:215)
at org.glassfish.javaee.full.deployment.EarDeployer.doOnAllTypedBundles(EarDeployer.java:224)
at org.glassfish.javaee.full.deployment.EarDeployer.doOnAllBundles(EarDeployer.java:250)
at org.glassfish.javaee.full.deployment.EarDeployer.prepare(EarDeployer.java:138)
at com.sun.enterprise.v3.server.ApplicationLifecycle.prepareModule(ApplicationLifecycle.java:871)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:410)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:240)
at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:389)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$1.execute(CommandRunnerImpl.java:348)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:363)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1085)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1200(CommandRunnerImpl.java:95)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1291)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1259)
at com.sun.enterprise.v3.admin.AdminAdapter.doCommand(AdminAdapter.java:461)
at com.sun.enterprise.v3.admin.AdminAdapter.service(AdminAdapter.java:212)
at com.sun.grizzly.tcp.http11.GrizzlyAdapter.service(GrizzlyAdapter.java:179)
at com.sun.enterprise.v3.server.HK2Dispatcher.dispath(HK2Dispatcher.java:117)
at com.sun.enterprise.v3.services.impl.ContainerMapper$Hk2DispatcherCallable.call(ContainerMapper.java:354)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:195)
at com.sun.grizzly.http.ProcessorTask.invokeAdapter(ProcessorTask.java:860)
at com.sun.grizzly.http.ProcessorTask.doProcess(ProcessorTask.java:757)
at com.sun.grizzly.http.ProcessorTask.process(ProcessorTask.java:1056)
at com.sun.grizzly.http.DefaultProtocolFilter.execute(DefaultProtocolFilter.java:229)
at com.sun.grizzly.DefaultProtocolChain.executeProtocolFilter(DefaultProtocolChain.java:137)
at com.sun.grizzly.DefaultProtocolChain.execute(DefaultProtocolChain.java:104)
at com.sun.grizzly.DefaultProtocolChain.execute(DefaultProtocolChain.java:90)
at com.sun.grizzly.http.HttpProtocolChain.execute(HttpProtocolChain.java:79)
at com.sun.grizzly.ProtocolChainContextTask.doCall(ProtocolChainContextTask.java:54)
at com.sun.grizzly.SelectionKeyContextTask.call(SelectionKeyContextTask.java:59)
at com.sun.grizzly.ContextTask.run(ContextTask.java:71)
at com.sun.grizzly.util.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:532)
at com.sun.grizzly.util.AbstractThreadPool$Worker.run(AbstractThreadPool.java:513)
at java.lang.Thread.run(Thread.java:722)
|#]
[#|2012-09-25T15:54:18.366+0300|SEVERE|glassfish3.1.2|javax.enterprise.system.tools.admin.org.glassfish.deployment.admin|_ThreadID=45;_ThreadName=Thread-2;|Exception while preparing the app : com.km.orgfrm.datamodel.entity.AbstractEntity.<init>(Lorg/eclipse/persistence/internal/descriptors/PersistenceObject;)V|#]

This type of errors are usually due to having two different versions of the same library in your classpath.
Please check to see if the new version of glassfish doesn't come with a standard, included, version of one of the libraries your application is using and deploying. Being first on the scene of the crime :), the application server will load the first class (the standard one), which is different from the one your application wants to use.
Forcing use of different class loaders could solve this type of problem. However, I don't have experience with Glassfish, but have encountered similar problems on Weblogic.