Parsing and writing log data from mapreduce to hive - java

Ive written a small hadoop map program to parse(regex) information from log files generated from other apps. I found this article http://www.nearinfinity.com//blogs/stephen_mouring_jr/2013/01/04/writing-hive-tables-from-mapreduce.html
This article explains how to parse and write it into the hive table
Here is my code
import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.fs.Path;
import org.apache.hadoop.io.IntWritable;
import org.apache.hadoop.io.LongWritable;
import org.apache.hadoop.io.Text;
import org.apache.hadoop.mapreduce.Job;
import org.apache.hadoop.mapreduce.Mapper;
import org.apache.hadoop.mapreduce.lib.input.FileInputFormat;
import org.apache.hadoop.mapreduce.lib.output.FileOutputFormat;
import org.apache.hadoop.util.GenericOptionsParser;
public class ParseDataToDB {
public static final String SEPARATOR_FIELD = new String(new char[] {1});
public static final String SEPARATOR_ARRAY_VALUE = new String(new char[] {2});
public static final BytesWritable NULL_KEY = new BytesWritable();
public static class MyMapper extends Mapper<LongWritable, Text, BytesWritable, Text> {
//private final static IntWritable one = new IntWritable(1);
private Text word = new Text();
private ArrayList<String> bazValues = new ArrayList<String>();
public void map(LongWritable key, Text value,
OutputCollector<BytesWritable, Text> context)
throws IOException {
String line = value.toString();
StringTokenizer tokenizer = new StringTokenizer(line);
while(tokenizer.hasMoreTokens()){
word.set(tokenizer.nextToken());
if(word.find("extract") > -1) {
System.out.println("in herer");
bazValues.add(line);
}
}
// Build up the array values as a delimited string.
StringBuilder bazValueBuilder = new StringBuilder();
int i = 0;
for (String bazValue : bazValues) {
bazValueBuilder.append(bazValue);
++i;
if (i < bazValues.size()) {
bazValueBuilder.append(SEPARATOR_ARRAY_VALUE);
}
}
// Build up the column values / fields as a delimited string.
String hiveRow = new String();
hiveRow += "fooValue";
hiveRow += SEPARATOR_FIELD;
hiveRow += "barValue";
hiveRow += SEPARATOR_FIELD;
hiveRow += bazValueBuilder.toString();
System.out.println("in herer hiveRow" + hiveRow);
// StringBuilder hiveRow = new StringBuilder();
// hiveRow.append("fooValue");
// hiveRow.append(SEPARATOR_FIELD);
// hiveRow.append("barValue");
// hiveRow.append(SEPARATOR_FIELD);
// hiveRow.append(bazValueBuilder.toString());
// Emit a null key and a Text object containing the delimited fields
context.collect(NULL_KEY, new Text(hiveRow));
}
}
public static void main(String[] args) throws IOException, InterruptedException, ClassNotFoundException {
Configuration conf = new Configuration();
String[] otherArgs = new GenericOptionsParser(conf, args).getRemainingArgs();
Job job = new Job(conf, "MyTest");
job.setJarByClass(ParseDataToDB.class);
job.setMapperClass(MyMapper.class);
job.setMapOutputKeyClass(BytesWritable.class);
job.setMapOutputValueClass(Text.class);
job.setOutputKeyClass(BytesWritable.class);
job.setOutputValueClass(Text.class);
FileInputFormat.addInputPath(job, new Path(otherArgs[0]));
FileOutputFormat.setOutputPath(job, new Path(otherArgs[1]));
System.exit(job.waitForCompletion(true) ? 0 : 1);
}
}
But when i run this app, i get an error saying "expected ByteWritable but recieved LongWritable. Can someone tell me what im doing wrong? Im new to hadoop programming. Im also open to creating external tables and pointing that to hdfs, again im struggling with implementation.
Thanks.

from looking at article you provided LINK, Show NULL_KEY that you haven't set any value.
It should be
public static final BytesWritable NULL_KEY = new BytesWritable(null);

I think as you are trying to output NULL as key from the map so you can use NullWritable. So your code would be something as below:-
import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.fs.Path;
import org.apache.hadoop.io.IntWritable;
import org.apache.hadoop.io.LongWritable;
import org.apache.hadoop.io.Text;
import org.apache.hadoop.mapreduce.Job;
import org.apache.hadoop.mapreduce.Mapper;
import org.apache.hadoop.mapreduce.lib.input.FileInputFormat;
import org.apache.hadoop.mapreduce.lib.output.FileOutputFormat;
import org.apache.hadoop.util.GenericOptionsParser;
public class ParseDataToDB {
public static final String SEPARATOR_FIELD = new String(new char[] {1});
public static final String SEPARATOR_ARRAY_VALUE = new String(new char[] {2});
public static class MyMapper extends Mapper<LongWritable, Text, NullWritable, Text> {
//private final static IntWritable one = new IntWritable(1);
private Text word = new Text();
private ArrayList<String> bazValues = new ArrayList<String>();
public void map(LongWritable key, Text value,
OutputCollector<NullWritable, Text> context)
throws IOException {
String line = value.toString();
StringTokenizer tokenizer = new StringTokenizer(line);
while(tokenizer.hasMoreTokens()){
word.set(tokenizer.nextToken());
if(word.find("extract") > -1) {
System.out.println("in herer");
bazValues.add(line);
}
}
// Build up the array values as a delimited string.
StringBuilder bazValueBuilder = new StringBuilder();
int i = 0;
for (String bazValue : bazValues) {
bazValueBuilder.append(bazValue);
++i;
if (i < bazValues.size()) {
bazValueBuilder.append(SEPARATOR_ARRAY_VALUE);
}
}
// Build up the column values / fields as a delimited string.
String hiveRow = new String();
hiveRow += "fooValue";
hiveRow += SEPARATOR_FIELD;
hiveRow += "barValue";
hiveRow += SEPARATOR_FIELD;
hiveRow += bazValueBuilder.toString();
System.out.println("in herer hiveRow" + hiveRow);
// Emit a null key and a Text object containing the delimited fields
context.collect(NullWritable.get(), new Text(hiveRow));
}
}
public static void main(String[] args) throws IOException, InterruptedException, ClassNotFoundException {
Configuration conf = new Configuration();
String[] otherArgs = new GenericOptionsParser(conf, args).getRemainingArgs();
Job job = new Job(conf, "MyTest");
job.setJarByClass(ParseDataToDB.class);
job.setMapperClass(MyMapper.class);
job.setMapOutputKeyClass(NullWritable.class);
job.setMapOutputValueClass(Text.class);
job.setOutputKeyClass(NullWritable.class);
job.setOutputValueClass(Text.class);
FileInputFormat.addInputPath(job, new Path(otherArgs[0]));
FileOutputFormat.setOutputPath(job, new Path(otherArgs[1]));
System.exit(job.waitForCompletion(true) ? 0 : 1);
}
}

Related

Duplicate "values" for some key in map-reduce java program

I am new in mapreduce and hadoop (hadoop 3.2.3 and java 8).
I am trying to separate some lines based on a symbol in a line.
Example: "q1,a,q0," should be return ('a',"q1,a,q0,") as (key, value).
My dataset contains ten(10) lines , five(5) for key 'a' and five for key 'b'.
I expect to get 5 line for each key but i always get five for 'a' and 10 for 'b'
Data
A,q0,a,q1;A,q0,b,q0;A,q1,a,q1;A,q1,b,q2;A,q2,a,q1;A,q2,b,q0;B,s0,a,s0;B,s0,b,s1;B,s1,a,s1;B,s1,b,s0
Mapper class:
import java.io.IOException;
import org.apache.hadoop.io.ByteWritable;
import org.apache.hadoop.io.LongWritable;
import org.apache.hadoop.io.Text;
import org.apache.hadoop.mapreduce.Mapper;
public class MyMapper extends Mapper<LongWritable, Text, ByteWritable ,Text>{
private ByteWritable key1 = new ByteWritable();
//private int n ;
private int count =0 ;
private Text wordObject = new Text();
#Override
public void map(LongWritable key, Text value, Context context)throws IOException, InterruptedException {
String ftext = value.toString();
for (String line: ftext.split(";")) {
wordObject = new Text();
if (line.split(",")[2].equals("b")) {
key1.set((byte) 'b');
wordObject.set(line) ;
context.write(key1,wordObject);
continue ;
}
key1.set((byte) 'a');
wordObject.set(line) ;
context.write(key1,wordObject);
}
}
}
Reducer class:
import java.io.IOException;
import org.apache.hadoop.io.ByteWritable;
import org.apache.hadoop.io.Text;
import org.apache.hadoop.mapreduce.Reducer;
import org.apache.hadoop.mapreduce.Reducer.Context;
public class MyReducer extends Reducer<ByteWritable, Text, ByteWritable ,Text>{
private Integer count=0 ;
#Override
public void reduce(ByteWritable key, Iterable<Text> values, Context context) throws IOException, InterruptedException {
for(Text val : values ) {
count++ ;
}
Text symb = new Text(count.toString()) ;
context.write(key , symb);
}
}
Driver class:
import org.apache.hadoop.fs.Path;
import org.apache.hadoop.io.ByteWritable;
import org.apache.hadoop.io.Text;
import org.apache.hadoop.mapreduce.lib.input.FileInputFormat;
import org.apache.hadoop.mapreduce.lib.output.FileOutputFormat;
import org.apache.hadoop.mapreduce.Job;
import org.apache.hadoop.conf.Configured;
import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.util.Tool;
import org.apache.hadoop.util.ToolRunner;
public class MyDriver extends Configured implements Tool {
public int run(String[] args) throws Exception {
if (args.length != 2) {
System.out.printf("Usage: %s [generic options] <inputdir> <outputdir>\n", getClass().getSimpleName());
return -1;
}
#SuppressWarnings("deprecation")
Job job = new Job(getConf());
job.setJarByClass(MyDriver.class);
job.setJobName("separation ");
FileInputFormat.setInputPaths(job, new Path(args[0]));
FileOutputFormat.setOutputPath(job, new Path(args[1]));
job.setMapperClass(MyMapper.class);
job.setReducerClass(MyReducer.class);
job.setMapOutputKeyClass(ByteWritable.class);
job.setMapOutputValueClass(Text.class);
job.setOutputKeyClass(ByteWritable.class);
job.setOutputValueClass(Text.class);
boolean success = job.waitForCompletion(true);
return success ? 0 : 1;
}
public static void main(String[] args) throws Exception {
int exitCode = ToolRunner.run(new Configuration(), new MyDriver(), args);
System.exit(exitCode);
}
}
The problem was solved by putting the variable "count" inside the function "Reduce()".
Does your input read more than one line that has 5 more b's? I cannot reproduce for that one line, but your code can be cleaned up.
For the following code, I get output as
a 5
b 5
static class Mapper extends org.apache.hadoop.mapreduce.Mapper<LongWritable, Text, ByteWritable, Text> {
final ByteWritable keyOut = new ByteWritable();
final Text valueOut = new Text();
#Override
protected void map(LongWritable key, Text value, org.apache.hadoop.mapreduce.Mapper<LongWritable, Text, ByteWritable, Text>.Context context) throws IOException, InterruptedException {
String line = value.toString();
if (line.isEmpty()) {
return;
}
StringTokenizer tokenizer = new StringTokenizer(line, ";");
while (tokenizer.hasMoreTokens()) {
String token = tokenizer.nextToken();
String[] parts = token.split(",");
String keyStr = parts[2];
if (keyStr.matches("[ab]")) {
keyOut.set((byte) keyStr.charAt(0));
valueOut.set(token);
context.write(keyOut, valueOut);
}
}
}
}
static class Reducer extends org.apache.hadoop.mapreduce.Reducer<ByteWritable, Text, Text, LongWritable> {
static final Text keyOut = new Text();
static final LongWritable valueOut = new LongWritable();
#Override
protected void reduce(ByteWritable key, Iterable<Text> values, org.apache.hadoop.mapreduce.Reducer<ByteWritable, Text, Text, LongWritable>.Context context)
throws IOException, InterruptedException {
keyOut.set(new String(new byte[]{key.get()}, StandardCharsets.UTF_8));
valueOut.set(StreamSupport.stream(values.spliterator(), true)
.mapToLong(v -> 1).sum());
context.write(keyOut, valueOut);
}
}

Hadoop WordCount for multiple words not getting the public variables

I have a simple Hadoop program that I need to implement for an essay in mu University.
It's an alternative WordCount problem, It should make combined Text() strings that have n words and to sum up with the reducer only the ones that are >= than k appearances.
I have put the n and k integers to get caught from the command line after the input and output folders (args[3] and args[4]).
The issue is that n and k when they are used inside the mapper and the reducer are empty, despite the fact that get their values correctly from the command.
The code is the below, what goes wrong?
public class MultiWordCount {
public static int n;
public static int k;
public static class TokenizerMapper
extends Mapper<Object, Text, Text, IntWritable>{
private final static IntWritable one = new IntWritable(1);
private Text word = new Text();
private StringBuilder phrase = new StringBuilder();
public void map(Object key, Text value, Context context
) throws IOException, InterruptedException {
StringTokenizer itr = new StringTokenizer(value.toString());
while (itr.hasMoreTokens()) {
for (int i=0; i<n; i++) {
if (itr.hasMoreTokens()) {
phrase.append(itr.nextToken());
phrase.append(" ");
}
}
word.set(phrase.toString());
context.write(word, one);
phrase.setLength(0);
}
}
}
public static class IntSumReducer
extends Reducer<Text,IntWritable,Text,IntWritable> {
private IntWritable result = new IntWritable();
public void reduce(Text key, Iterable<IntWritable> values,
Context context
) throws IOException, InterruptedException {
int sum = 0;
for (IntWritable val : values) {
sum += val.get();
}
if(sum >= k) {
result.set(sum);
context.write(key, result);
}
}
}
public static void main(String[] args) throws Exception {
Configuration conf = new Configuration();
n = Integer.parseInt(args[2]);
k = Integer.parseInt(args[3]);
Job job = Job.getInstance(conf, "multi word count");
job.setJarByClass(WordCount.class);
job.setMapperClass(TokenizerMapper.class);
job.setCombinerClass(IntSumReducer.class);
job.setReducerClass(IntSumReducer.class);
job.setOutputKeyClass(Text.class);
job.setOutputValueClass(IntWritable.class);
FileInputFormat.addInputPath(job, new Path(args[0]));
FileOutputFormat.setOutputPath(job, new Path(args[1]));
System.exit(job.waitForCompletion(true) ? 0 : 1);
}
}
Even though your Java-based logic here looks sound, Map and Reduce function implemented functions in Hadoop are more myopic or independent than one thinks. To be more precise, you declare public static variables in the parent class and initialize them in the driver/main function, but the mapper/reducer instances do not have any access to the driver, but only to their strict scopes within the TokenizerMapper and IntSumReducer classes. This is why n and k seem empty when you look inside the mappers and reducers.
Since your program has only one job and is executed within a single Hadoop Configuration, no Hadoop Counters are needed here. You can just declare Configuration based values that will be accessed by every mapper and reducer right before the executions of the Map and Reduce functions, through the setup functions inside the TokenizerMapper and IntSumReducer classes.
To declare those types of values in order to pass them to the MapReduce functions, you can just do something like this in the driver/main method:
conf.set("n", args[2]);
And then access this value (while converting it fron String to int) in the setup methods of TokenizerMapper and IntSumReducer:
n = Integer.parseInt(context.getConfiguration().get("n"));
So the program can look like this:
import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.fs.Path;
import org.apache.hadoop.io.IntWritable;
import org.apache.hadoop.io.Text;
import org.apache.hadoop.mapreduce.Job;
import org.apache.hadoop.mapreduce.Mapper;
import org.apache.hadoop.mapreduce.Reducer;
import org.apache.hadoop.mapreduce.lib.input.FileInputFormat;
import org.apache.hadoop.mapreduce.lib.output.FileOutputFormat;
import org.apache.hadoop.util.GenericOptionsParser;
import org.apache.hadoop.fs.FileSystem;
import org.apache.hadoop.fs.FileStatus;
import org.apache.hadoop.fs.FSDataOutputStream;
import org.apache.hadoop.mapreduce.lib.input.FileSplit;
import org.apache.hadoop.mapreduce.Counters;
import java.io.*;
import java.io.IOException;
import java.util.*;
import java.nio.charset.StandardCharsets;
public class MultiWordCount
{
public static class TokenizerMapper extends Mapper<Object, Text, Text, IntWritable>
{
private final static IntWritable one = new IntWritable(1);
private Text word = new Text();
private StringBuilder phrase = new StringBuilder();
private int n;
protected void setup(Context context) throws IOException, InterruptedException
{
n = Integer.parseInt(context.getConfiguration().get("n"));
}
public void map(Object key, Text value, Context context) throws IOException, InterruptedException
{
StringTokenizer itr = new StringTokenizer(value.toString());
while (itr.hasMoreTokens())
{
for (int i = 0; i < n; i++)
{
if (itr.hasMoreTokens())
{
phrase.append(itr.nextToken());
phrase.append(" ");
}
}
word.set(phrase.toString());
context.write(word, one);
phrase.setLength(0);
}
}
}
public static class IntSumReducer extends Reducer<Text,IntWritable,Text,IntWritable>
{
private IntWritable result = new IntWritable();
private int k;
protected void setup(Context context) throws IOException, InterruptedException
{
k = Integer.parseInt(context.getConfiguration().get("k"));
}
public void reduce(Text key, Iterable<IntWritable> values, Context context) throws IOException, InterruptedException
{
int sum = 0;
for (IntWritable val : values)
sum += val.get();
if(sum >= k)
{
result.set(sum);
context.write(key, result);
}
}
}
public static void main(String[] args) throws Exception
{
Configuration conf = new Configuration();
conf.set("n", args[2]);
conf.set("k", args[3]);
FileSystem fs = FileSystem.get(conf);
if(fs.exists(new Path(args[1])))
fs.delete(new Path(args[1]), true);
Job job = Job.getInstance(conf, "Multi Word Count");
job.setJarByClass(MultiWordCount.class);
job.setMapperClass(TokenizerMapper.class);
job.setCombinerClass(IntSumReducer.class);
job.setReducerClass(IntSumReducer.class);
job.setOutputKeyClass(Text.class);
job.setOutputValueClass(IntWritable.class);
FileInputFormat.addInputPath(job, new Path(args[0]));
FileOutputFormat.setOutputPath(job, new Path(args[1]));
System.exit(job.waitForCompletion(true) ? 0 : 1);
}
}
And for n=3 and k=1, the output looks like this (using a number of text files with Franz Kafka sentences as seen here):

java.lang.ClassCastException: class org.json.JSONObject in MapReduce program

I have an input text file as given below (partial):
{"author":"Martti Paturi","book":"Aiotko oppikouluun"}
{"author":"International Meeting of Neurobiologists Amsterdam 1959.","book":"Structure and function of the cerebral cortex"}
{"author":"Paraná (Brazil : State). Comissão de Desenvolvimento Municipal.","book":"Plano diretor de desenvolvimento de Maringá"}
I need to perform MapReduce on this file to get as output a JSON object which has all the books from the same author in a JSON array, in the form:
{"author": "Ian Fleming", "books": [{"book": "Goldfinger"},{"book": "Moonraker"}]}
My code is as follows:
import java.io.IOException;
import java.util.StringTokenizer;
import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.fs.Path;
import org.apache.hadoop.io.IntWritable;
import org.apache.hadoop.io.LongWritable;
import org.apache.hadoop.io.NullWritable;
import org.apache.hadoop.io.Text;
import org.apache.hadoop.mapreduce.Job;
import org.apache.hadoop.mapreduce.Mapper;
import org.apache.hadoop.mapreduce.Reducer;
import org.apache.hadoop.mapreduce.lib.input.FileInputFormat;
import org.apache.hadoop.mapreduce.lib.output.FileOutputFormat;
import org.apache.hadoop.util.GenericOptionsParser;
import org.json.*;
public class CombineBooks {
//TODO define variables and implement necessary components
/*public static class MyTuple implements Writable{
private String author;
private String book;
public void readFields(DataInput in){
JSONObject obj = new JSONObject(in.readLine());
author = obj.getString("author");
book = obj.getString("book");
}
public void write(DataOutput out){
out.writeBytes(author);
out.writeBytes(book);
}
public static MyTuple read(DataInput in){
MyTuple tup = new MyTuple();
tup.readFields(in);
return tup;
}
}*/
public static class Map extends Mapper<LongWritable, Text, Text, Text>{
public void map(LongWritable key, Text value, Context context) throws IOException, InterruptedException{
String author;
String book;
String line = value.toString();
String[] tuple = line.split("\\n");
try{
for(int i=0;i<tuple.length; i++){
JSONObject obj = new JSONObject(tuple[i]);
author = obj.getString("author");
book = obj.getString("book");
context.write(new Text(author), new Text(book));
}
}catch(JSONException e){
e.printStackTrace();
}
}
}
public static class Combine extends Reducer<Text, Text, Text, Text>{
public void reduce(Text key, Iterable<Text> values, Context context) throws IOException, InterruptedException{
String booklist = null;
int i = 0;
for(Text val : values){
if(booklist.equals(null)){
booklist = booklist + val.toString();
}
else{
booklist = booklist + "," + val.toString();
}
i++;
}
context.write(key, new Text(booklist));
}
}
public static class Reduce extends Reducer<Text,Text,JSONObject,NullWritable>{
public void reduce(Text key, Iterable<Text> values, Context context) throws IOException, InterruptedException{
try{
JSONArray ja = new JSONArray();
String[] book = null;
for(Text val : values){
book = val.toString().split(",");
}
for(int i=0; i<book.length; i++){
JSONObject jo = new JSONObject().put("book", book[i]);
ja.put(jo);
}
JSONObject obj = new JSONObject();
obj.put("author", key.toString());
obj.put("books", ja);
context.write(obj, NullWritable.get());
}catch(JSONException e){
e.printStackTrace();
}
}
}
public static void main(String[] args) throws Exception {
Configuration conf = new Configuration();
String[] otherArgs = new GenericOptionsParser(conf, args)
.getRemainingArgs();
if (otherArgs.length != 2) {
System.err.println("Usage: CombineBooks <in> <out>");
System.exit(2);
}
//TODO implement CombineBooks
Job job = new Job(conf, "CombineBooks");
job.setJarByClass(CombineBooks.class);
job.setMapperClass(Map.class);
job.setCombinerClass(Combine.class);
job.setReducerClass(Reduce.class);
job.setOutputKeyClass(JSONObject.class);
job.setOutputValueClass(NullWritable.class);
FileInputFormat.addInputPath(job, new Path(otherArgs[0]));
FileOutputFormat.setOutputPath(job, new Path(otherArgs[1]));
//TODO implement CombineBooks
System.exit(job.waitForCompletion(true) ? 0 : 1);
}
}
When I am trying to run it, I am getting the follwoing error:
java.lang.ClassCastException: class org.json.JSONObject
at java.lang.Class.asSubclass(Class.java:3165)
at org.apache.hadoop.mapred.JobConf.getOutputKeyComparator(JobConf.java:795)
at org.apache.hadoop.mapred.MapTask$MapOutputBuffer.<init>(MapTask.java:964)
at org.apache.hadoop.mapred.MapTask$NewOutputCollector.<init>(MapTask.java:673)
at org.apache.hadoop.mapred.MapTask.runNewMapper(MapTask.java:756)
at org.apache.hadoop.mapred.MapTask.run(MapTask.java:364)
at org.apache.hadoop.mapred.Child$4.run(Child.java:255)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:415)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1190)
at org.apache.hadoop.mapred.Child.main(Child.java:249)
I am using java-json.jar as an external dependency. I am not sure what the error is here. Any halp is appreciated!
the json jar file have to be saved in the hadoop lib folder and then try and execute the program.
Have a look at: Hadoop Writable. While you are indeed telling Hadoop to set the value of the output key, but JSONObject doesn't implement Writable interface.
Why you just don't output text?
context.write(new Text(jo.toString()), NullWritable.get());

FileAlreadyExistsException while running MapReduce code

This program is supposed to accomplish the MapReduce job. The output of the first job has to be taken as the input of the second job.
When I run it, I get two errors:
Exception in thread "main" org.apache.hadoop.mapred.FileAlreadyExistsException
The mapping part is running 100% but the reducer is not running.
Here's my code:
import java.io.IOException;
import org.apache.hadoop.mapreduce.lib.input.FileInputFormat;
import org.apache.hadoop.mapreduce.lib.input.TextInputFormat;
import org.apache.hadoop.mapreduce.lib.output.FileOutputFormat;
import org.apache.hadoop.mapreduce.lib.output.TextOutputFormat;
import org.apache.hadoop.mapreduce.Mapper;
import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.fs.Path;
import org.apache.hadoop.io.IntWritable;
import org.apache.hadoop.io.Text;
import org.apache.hadoop.mapreduce.Job;
import org.apache.hadoop.mapreduce.Reducer;
import org.apache.hadoop.io.LongWritable;
public class MaxPubYear {
public static class FrequencyMapper extends Mapper<LongWritable, Text, Text, IntWritable> {
public void map(LongWritable key, Text value, Context context) throws IOException, InterruptedException {
Text word = new Text();
String delim = ";";
Integer year = 0;
String tokens[] = value.toString().split(delim);
if (tokens.length >= 4) {
year = TryParseInt(tokens[3].replace("\"", "").trim());
if (year > 0) {
word = new Text(year.toString());
context.write(word, new IntWritable(1));
}
}
}
}
public static class FrequencyReducer extends
Reducer<Text, IntWritable, Text, IntWritable> {
public void reduce(Text key, Iterable<IntWritable> values,
Context context) throws IOException, InterruptedException {
int sum = 0;
for (IntWritable value : values) {
sum += value.get();
}
context.write(key, new IntWritable(sum));
}
}
public static class MaxPubYearMapper extends
Mapper<LongWritable, Text, IntWritable, Text> {
public void map(LongWritable key, Text value, Context context)
throws IOException, InterruptedException {
String delim = "\t";
Text valtosend = new Text();
String tokens[] = value.toString().split(delim);
if (tokens.length == 2) {
valtosend.set(tokens[0] + ";" + tokens[1]);
context.write(new IntWritable(1), valtosend);
}
}
}
public static class MaxPubYearReducer extends
Reducer<IntWritable, Text, Text, IntWritable> {
public void reduce(IntWritable key, Iterable<Text> values,
Context context) throws IOException, InterruptedException {
int maxiValue = Integer.MIN_VALUE;
String maxiYear = "";
for (Text value : values) {
String token[] = value.toString().split(";");
if (token.length == 2
&& TryParseInt(token[1]).intValue() > maxiValue) {
maxiValue = TryParseInt(token[1]);
maxiYear = token[0];
}
}
context.write(new Text(maxiYear), new IntWritable(maxiValue));
}
}
public static void main(String[] args) throws Exception {
Configuration conf = new Configuration();
Job job = new Job(conf, "Frequency");
job.setJarByClass(MaxPubYear.class);
job.setOutputKeyClass(Text.class);
job.setOutputValueClass(IntWritable.class);
job.setMapperClass(FrequencyMapper.class);
job.setCombinerClass(FrequencyReducer.class);
job.setReducerClass(FrequencyReducer.class);
job.setOutputFormatClass(TextOutputFormat.class);
job.setInputFormatClass(TextInputFormat.class);
FileInputFormat.addInputPath(job, new Path(args[0]));
FileOutputFormat.setOutputPath(job, new Path(args[1] + "_temp"));
int exitCode = job.waitForCompletion(true) ? 0 : 1;
if (exitCode == 0) {
Job SecondJob = new Job(conf, "Maximum Publication year");
SecondJob.setJarByClass(MaxPubYear.class);
SecondJob.setOutputKeyClass(Text.class);
SecondJob.setOutputValueClass(IntWritable.class);
SecondJob.setMapOutputKeyClass(IntWritable.class);
SecondJob.setMapOutputValueClass(Text.class);
SecondJob.setMapperClass(MaxPubYearMapper.class);
SecondJob.setReducerClass(MaxPubYearReducer.class);
FileInputFormat.addInputPath(SecondJob, new Path(args[1] + "_temp"));
FileOutputFormat.setOutputPath(SecondJob, new Path(args[1]));
System.exit(SecondJob.waitForCompletion(true) ? 0 : 1);
}
}
public static Integer TryParseInt(String trim) {
// TODO Auto-generated method stub
return(0);
}
}
Exception in thread "main"
org.apache.hadoop.mapred.FileAlreadyExistsException
Map-reduce job does not overwrite the contents in a existing directory. Output path to MR job must be a directory path which does not exist. MR job will create a directory at specified path with files within it.
In your code:
FileOutputFormat.setOutputPath(job, new Path(args[1] + "_temp"));
Make sure this path does not exist when you run MR job.

Hadoop 2 IOException only when trying to open supposed cache files

I recent updated to hadoop 2.2 (using this tutorial here).
My main job class looks like so, and throws an IOException:
import java.io.*;
import java.net.*;
import java.util.*;
import java.util.regex.*;
import org.apache.hadoop.conf.*;
import org.apache.hadoop.fs.Path;
import org.apache.hadoop.io.*;
import org.apache.hadoop.mapreduce.*;
import org.apache.hadoop.mapreduce.lib.chain.*;
import org.apache.hadoop.mapreduce.lib.input.*;
import org.apache.hadoop.mapreduce.lib.output.*;
import org.apache.hadoop.mapreduce.lib.reduce.*;
public class UFOLocation2
{
public static class MapClass extends Mapper<LongWritable, Text, Text, LongWritable>
{
private final static LongWritable one = new LongWritable(1);
private static Pattern locationPattern = Pattern.compile("[a-zA-Z]{2}[^a-zA-Z]*$");
private Map<String, String> stateNames;
#Override
public void setup(Context context)
{
try
{
URI[] cacheFiles = context.getCacheFiles();
setupStateMap(cacheFiles[0].toString());
}
catch (IOException ioe)
{
System.err.println("Error reading state file.");
System.exit(1);
}
}
public void map(LongWritable key, Text value, Context context)
throws IOException, InterruptedException
{
String line = value.toString();
String[] fields = line.split("\t");
String location = fields[2].trim();
if (location.length() >= 2)
{
Matcher matcher = locationPattern.matcher(location);
if (matcher.find())
{
int start = matcher.start();
String state = location.substring(start, start + 2);
context.write(new Text(lookupState(state.toUpperCase())), one);
}
}
}
private void setupStateMap(String filename) throws IOException
{
Map<String, String> states = new HashMap<String, String>();
BufferedReader reader = new BufferedReader(new FileReader(filename));
String line = reader.readLine();
while (line != null)
{
String[] split = line.split("\t");
states.put(split[0], split[1]);
line = reader.readLine();
}
stateNames = states;
}
private String lookupState(String state)
{
String fullName = stateNames.get(state);
return fullName == null ? "Other" : fullName;
}
}
public static void main(String[] args) throws Exception
{
Configuration config = new Configuration();
Job job = Job.getInstance(config, "UFO Location 2");
job.setJarByClass(UFOLocation2.class);
job.addCacheFile(new URI("/user/kevin/data/states.txt"));
job.setOutputKeyClass(Text.class);
job.setOutputValueClass(LongWritable.class);
Configuration mapconf1 = new Configuration(false);
ChainMapper.addMapper(job, UFORecordValidationMapper.class, LongWritable.class,
Text.class, LongWritable.class,Text.class, mapconf1);
Configuration mapconf2 = new Configuration(false);
ChainMapper.addMapper(job, MapClass.class, LongWritable.class,
Text.class, Text.class, LongWritable.class, mapconf2);
job.setMapperClass(ChainMapper.class);
job.setCombinerClass(LongSumReducer.class);
job.setReducerClass(LongSumReducer.class);
FileInputFormat.addInputPath(job, new Path(args[0]));
FileOutputFormat.setOutputPath(job, new Path(args[1]));
System.exit(job.waitForCompletion(true) ? 0 : 1);
}
}
I get an IOException because it can't find the file "/user/kevin/data/states.txt" when it tries to instantiate the BufferredReader in the method setupStateMap()
Yes, it is deprecated and Job.addCacheFile() should be used to add the files and in your tasks( map or reduce) files can be accessed with Context.getCacheFiles().
//its fine addCacheFile and getCacheFiles are from 2.x u can use something like this
Path path = new Path(uri[0].getPath().toString());
if (fileSystem.exists(path)) {
FSDataInputStream dataInputStream = fileSystem.open(path);
byte[] data = new byte[1024];
while (dataInputStream.read(data) > 0) {
//do your stuff here
}
dataInputStream.close();
}
Deprecated functionality shall work anyway.

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