Better way to add custom Java classes to Matlab? - java

I can create Java classes, compile them into *.class files and may be pack them into *.jar files and place anywhere.
But I don't like editing of javaclasspath.txt, because it is systemwide and located somewhere in Matlab directory.
Also I don't like issuing 'javaaddpath' command and similar, because it will require doing this each time.
I would like to attach some jars or class-files to directory. For example, just put them there. Or I would like to add ajr files or classpath entries with Set Path menu of Matlab GUI.
Fortunately, it is said, that "You can also put the JAR file on the MATLAB path." in manual.
But unfortunately, I can activate this. Adding path entries feature does not see jar files and if I add java classpath entry, it does not work.
Is it possible to add classpath entries to Matlab in my suggested way?

You can place the javaaddpath(...) call in a startup.m file that you create and is placed anywhere on your MATLAB path, such as your default start directory.
You will not need to call javaaddpath each time you launch MATLAB because a startup.m on your path is automatically called every time.
It will not be systemwide unless you happen to place the startup.m in one of the MATLAB system paths.
see doc startup
Another variation is to use the -r flag and specify an m-file to run on launch that can be named anything. You can modify the Windows shortcut to use this flag, or create an alias if using Linux.
Follow the "Specifying Startup Options in the MATLAB Startup File" link from the doc startup page mentioned above for more info.

Using a startup file or function is the proper way to handle it - as explained in the other answer.
To see a better way to add jar files dynamically than using javaaddpath, refer to https://stackoverflow.com/a/21489260/2043349.

Related

How to run Saxon from command line

Can anyone please post detailed, step-by-step instructions how to install Saxon (10 HE) and how to run a transformation from the command line in MacOS (10.13.6)?
I have installed Java on my computer.
I have downloaded the SaxonHE10-6J.zip file from SourceForge.
Based on the recommendation here I have placed the saxon-he-10.6.jar in the myUserName/Library/Java/Extensions folder.
I then opened the Terminal application and entered a command based on this answer:
java -jar saxon-he-10.6.jar -'/Users/myUserName/Documents/path/to/mystylesheet.xsl' -s:'/Users/myUserName/Documents/path/to/some.xml'
This results in:
Unable to access jarfile saxon-he-10.6.jar
All my attempts, including moving the .jar file to the /Library/Java/Extensions directory or including a full path to the .jar file within the command failed with the same error message.
Please note that I am not a Java developer and I do not intend to use this in an application. All I want is to be able to perform an occasional transformation.
I should also note that the locations of my XML and XSLT files may change from one case to another. I would like to be able to keep the .jar file in a constant location and supply the paths to the XML and XSLT files as required - IOW, I want to have a command template where I only need to change the 2 filepaths (and possibly add some options to the transformation).
What do I need to do?
Eventually I got it working. Although these are not exactly the detailed, step-by-step instructions I was hoping for, I will summarize here what I have learned so far. Hopefully this will save someone the hours of frustration I had to go through.
Make sure you have Java installed on your computer. If not, download
from Oracle and install.
Download Saxon from SourceForge. Unzip and place it anywhere on your
hard disk, except:
do not place it in /Library/Java/Extensions or in myUserName/Library/Java/Extensions;
do not place it within a folder whose name contains a / (see below for description).
To initiate a transformation, make your command:
java -jar 'path/to/saxon-he-10.6.jar' -xsl:'path/to/mystylesheet.xsl' -s:'path/to/some.xml'
Alternatively, you can use:
java -cp 'path/to/saxon-he-10.6.jar' net.sf.saxon.Transform -xsl:'path/to/mystylesheet.xsl' -s:'path/to/some.xml'
This form can be also used to run XQuery by changing
net.sf.saxon.Transform to net.sf.saxon.Query.
For adding more options and/or parameters to your command, see the
instructions given here:
https://www.saxonica.com/html/documentation10/using-xsl/commandline/
but do not follow the instructions at the top of the page regarding
the form of the basic command.
Corrections/additions are most welcome.
Description of the problem with folder name containing /:
Put all 3 files (saxon-he-10.6.jar, mystylesheet.xsl and
some.xml in a folder named XML/RSS in my Documents folder;
Ran the following command:
java -jar '/Users/myUserName/Documents/XML:RSS/saxon-he-10.6.jar' -xsl:'/Users/myUserName/Documents/XML:RSS/mystylesheet.xsl' -s:'/Users/myUserName/Documents/XML:RSS/some.xml'
Received the following error:
Error: Could not find or load main class net.sf.saxon.Transform Caused by: java.lang.ClassNotFoundException: net.sf.saxon.Transform
Moved only the .jar file to the parent folder and ran the following
command:
java -jar '/Users/myUserName/Documents/saxon-he-10.6.jar' -xsl:'/Users/myUserName/Documents/XML:RSS/mystylesheet.xsl' -s:'/Users/myUserName/Documents/XML:RSS/some.xml'
Result: successful transformation.
Moved the .jar file back, renamed the folder to XMLRSS and ran the
following command:
java -jar '/Users/myUserName/Documents/XMLRSS/saxon-he-10.6.jar' -xsl:'/Users/myUserName/Documents/XMLRSS/mystylesheet.xsl' -s:'/Users/myUserName/Documents/XMLRSS/some.xml'
Result: successful transformation.
I don't ever use it myself: however myUserName/Library/Java/Extensions is special as far as the classpath is concerned (you don't need to put JAR files in this directory on the classpath), but it's not special as far as the -jar option is concerned - that needs to be an absolute or relative filename in the normal way and has nothing to do with the classpath.
If you've chosen to put the JAR file in this magic location, then I would use the command java net.sf.saxon.Transform options to pick Saxon up from the classpath rather than identifying the -jar location directly.
There are good reasons for NOT putting Saxon in this magic location, however; one reason is it will affect applications that don't actually want to use Saxon (they might be written to use some other XSLT processor, and you might not actually be aware that they use XSLT at all, until they stop working).

How to distribute native libraries with jar?

This is the directory structure I want to create when I finally deploy my software. It is a Java chat client with a webcam feature and for the webcam I am using LTI-CIVIL.
I was told that I can not use DLLs right from the JAR and I will have to extract them somewhere. All cool. However, what I cannot get my head around is how can I make it work ?
LTI comes with a large number of files in the zip that they provide on their site. If you are using Eclipse, you need to set the path to appropriate folder for the native library. However, this limits me to Eclipse and prevents me from distributing the JAR to my friends. Apparently, I will now have to point to that folder, and maybe load the files, programatiaclly
I am a beginner so if someone can download LTI-CIVIL, have a look at the directory structure and let me know how to achieve what I am trying to do then that would be highly appreciated.
AFAIK, for my 32 bit Windows, I need to point to native/win32-x86 folder.
What I am trying to do is to load the appropriate files in memory so that I can provide webcam facility. I want to avoid installers and simply give a zip file with a directory structure mentioned above so that people can extract, run the jar file from the folder and start chatting.
Clarification: I am trying to send a library with jar file and not in jar. I know extracting and using dlls from jar is tough
I'm assuming that it is not your own code which loads the native libraries (System.load), and they are loaded by a third-party jar (lti-civil).
In this case you have to set the enviroment variable LD_LIBRARY_PATH appropiately before lti-civil attempts to load the native libraries.
Either:
With a launcher script (e.g .bat), set the variable before running java, or set the system property, something like:
java -jar your.jar -Djava.library.path=/path/to/native/folder
At runtime. In the entry point of your program.
This is a bit "hackish", but it works.
Check this link for example:
http://nicklothian.com/blog/2008/11/19/modify-javalibrarypath-at-runtime/
Since you do not know the exact path beforehand, in both cases you will have to also find the correct path where the native libraries are located.
If the path to the libraries is relative to the path of the jar/launcher, then find the current path of the executable:
in a .bat launcher:
Get Directory Path of an executing Batch file
in java:
How to get the path of a running JAR file?
And then that, you can assume the libraries are located in path relative to this (../native), just calculate the path (and maybe expand it to an absolute path).
After you have calculated the absolute path, set the enviroment/system property as described in the first part of the answer.

How to run Java programs by clicking on their icon on Windows?

I have written a Java program that uses Java swing library. Now I would like to execute this program by double clicking on the executable file on Windows just like any other program with a GUI. How do I do that?
Since it is Java based and has a GUI, the obvious answer is to deploy it using Java Web Start.
Java Web Start (JWS) is the Oracle Corporation technology used to launch rich client (Swing, AWT, SWT) desktop applications directly from a network or internet link. It offers 'one click' installation for platforms that support Java.
JWS provides many appealing features including, but not limited to, splash screens, desktop integration, file associations, automatic update (including lazy downloads and programmatic control of updates), partitioning of natives & other resource downloads by platform, architecture or Java version, configuration of run-time environment (minimum J2SE version, run-time options, RAM etc.), easy management of common resources using extensions..
By 'desktop integration' read desktop shortcuts and menu items on supported platforms.
The 2 icons on the right (JotPad & Star Zoom Animation) are both Java based apps., installed using Java Web Start. Since JotPad is sand-boxed, the user will be prompted as to whether to create the shortcut. That choice is not offered for apps. with higher permission levels, so it would make more sense to install/remove the shortcuts and menu items using the IntegrationService - which allows an app. (after prompting the user) to create/remove them at run-time.
There are number of options:
Create an executable jar of your project. for this jar to work you have to have javaw as default application to open it.
Create an exe of your project.
Create a bat file which runs your jar file.
Take a look at this: How can I convert my Java program to an .exe file?
While the others mention excellent choices like creating a native executable, there is another useful method: creating a shortcut.
Right click your desktop, expand the "New" option, and click on "Shortcut".
Type "javaw.exe". Click next.
Name it whatever you want. Click done.
You'll notice the newly created shortcut on your desktop. Right click it and choose "Properties"
In the "Target" textfield, append "-jar path-to-your-jar.jar" where you replace "path-to-your-jar.jar" with the actual path to your jar
You can also now optionally change the icon to whatever icon you want
This shortcut can be pinned to the taskbar and be used from anywhere (considering you provided an absolute path to your JAR).
you need to create exe from the java program.
Creating executable jar files
First, make sure you have installed Java 1.2 or above. This facility is not available in previous versions of Java.
Next, create your working java system. In general, you will want to put it into a package. For this example, I created a trivial HelloWorld application that prints out "Hello World" plus the first command line argument, and placed it into the package "psae". Therefore, the HelloWorld files (HelloWorld.class, HelloWorld.java) were located in the directory psae. I tested the system to make sure it worked before going on to the next step.
In the directory in which the psae is located, created a file called "mainClass". This file contains a single line specifying where the main Class is to be found in the jar file. Note that I use the package specification. Here is the single line:
Main-Class: psae.HelloWorld
Note: make sure you type a carriage return after this line; some windows systems need it and will report a "Failed to load Main-Class manifest attribute" error.
Next, I create a jar file called psae.jar using the "jar" command in Java2. I use the "m" command line argument to specify the manifest file mainClass, which adds information to the jar file on where the main class will be found. Here is the jar command:
bertha:~ > jar cmf mainClass psae.jar psae
Just for fun, and to check what's happened, I print the table of contents for the jar file I just created. Here's the command and its result:
bertha:~ > jar tf psae.jar
META-INF/
META-INF/MANIFEST.MF
psae/
psae/HelloWorld.java
psae/HelloWorld.class
Having successfully created the jar file, I can now invoke java2 on it with the command line argument:
bertha:~ > java -jar psae.jar Philip
Hello World Philip
There are a few projects, like http://jsmooth.sourceforge.net/ and http://launch4j.sourceforge.net/
you can use something like Launch4j.
also look at JSMooth.
Hope it helps
There are two ways. Both involve packaging your code in a .jar.
The first way is to build an actual .exe file using a tool like Launch4j. It will require you to set up things like tell it which class to execute, which icon to use, which JRE is OK, what JRE parameters to use, etc.
The second option is to make the .jar itself executable. You do this by adding a manifest to the .jar. The manifest is a small configuration file that describes the jar. One of the attributes is Main-Class which defines the entry point. In other words, it says which class has the main function that should be called when the user double-clicks the file.
Here's a basic tutorial about manifests: http://docs.oracle.com/javase/tutorial/deployment/jar/manifestindex.html
The 2nd option is easier to get going, but users will know what to do with a .exe far more often.
Note that if either approach complains that it can't find the class, make sure to set the classpath manifest attribute to match your project.
If you have an executable jar file, just shift-right click on your file and set it to be opened by javaw. The other option (in case you want to pass in parameters to your application) is to create a .bat file where you spin off your application via java or javaw
Right click to your "project" in eclipse and select "export" then choose "Java->Runnable Jar File" select your project name and finish.
Seems you want to deploy and run the standalone application of swings. Being a java developer you should understand the power of jar files. Those are executable in themselves {so no need to create .exe files :)} .
The below code will help you to create a jar file.
Creating a jar File in Command Prompt
Start Command Prompt.
Navigate to the folder that holds your class files:
C:\>cd \mywork
Set path to include JDK’s bin. For example:
C:\mywork> path c:\Program Files\Java\jdk1.5.0_09\bin;%path%
Compile your class(es):
C:\mywork> javac *.java
Create a manifest file:
C:\mywork> echo Main-Class: NameOfProject >manifest.txt
Create a jar file:
C:\mywork> jar cvfm NameOfProject.jar manifest.txt *.class
Test your jar:
C:\mywork> DanceStudio.jar
After creating a jar just double click on it and you are done.
You have to create an executable jar file. For that you just simply add a META-INF folder to the jar, then add a MANIFEST.MF text file with two lines:
Manifest-Version: 1.0
Main-Class: your.package.YourMainClass
Here's how to run a Java program by RIGHT-CLICKING on it (in other words, from the Windows Explorer context menu). This handy trick is great for beginners who need to test their simple programs on the fly. Works on both Win7 and XP rigs.
[ATTN: Depending on the situation, you may need to remove the package directive from the top of your Java file.]
Step 1. Create a batch file (e.g., RWJ.bat) inside a folder of your choice (say, in C:\Program Files\Java.)
Step 2. Fill RWJ.bat with the following commands (they will work just fine as is with simple classes but you can, of course, tweak them according to your particular needs by specifying compiler / interpreter switches, passing args, adding echo off, removing pause or whatever):
javac %1
java %~n1
pause
The first command passes the full name of your right-clicked file to the Java compiler; the second one strips the file extension and feeds JVM with the class name only.
Step 3. Add the following key to your Registry: HKEY_CLASSES_ROOT\*\shell\Run With Java and then create its command (default value):
C:\Program Files\Java\RWJ.bat %1.
Step 4. Run your Java class by right-clicking it and selecting Run with Java option.
That's all there is to it.
Another way to run Java programs by pointing and clicking is to use AOT compilers. For example, GCC has an entry point named GCJ, which can be used to compile the source code into both byte codes and standard executable file for your particular OS.
And finally, instead ot batch files one can run WSH, etc.

Preparing JNA for use in Eclipse

Background:
I'm doing machine learning research, and want to use the FANN library to construct neural networks. The source code is written in C, but I need it wrapped so that I can use it with a lot of Java classes we've created.
Question:
The website provides a link to an already well received wrapper software called fannj. Its dependencies is the FANN library source code and JNA. I've never done wrapping before so JNA is brand new to me. The github homepage for the code mentions "you must set the jna.library.path system property to the path of the FANN Library". I'm currently in the process of trying to do this in Eclipse on Mac OS X. A friend of mine mentioned to me earlier that it means I have to pass the location of the FANN library as argument to the virtual machine, but he only showed me how to do this via the shell. I never actually ran this command from the shell, because I wasn't sure how it would conflict with whatever configurations I do in Eclipse later.
How do I set the jna.library.path in Eclipse? The JNA directory is huge, and I don't know where the actual executable is. My friend suggested I modify its run configuration through use of the argument tab, but like I said I don't actually know where the executable is. All I have is the large uncompressed jar file. How can I go about getting it set up in Eclipse?
You don't set in an IDE, just insert in some piece of code that is called BEFORE JNA is called, something like this:
System.setProperty("jna.library.path", "path you need");
Where System is java.lang.System. As for what path you need it must be the path that contains compiled dynamically linked FAAN library (a *dll).
Or just forget that alltogether and dump FAAN (*dlls, *so..) into Windows/system32 (or other appropriate folder on system you use) and these dll's will be on default search path.
Two allow Eclipse to use JNA, all you need to do is to put two jar files in Eclipse's Java Build Path, jna.jar and platform.jar. That's it.
To do this for an individual project, right click on the project in the Package Explorer, click Properties (at the bottom), click Java Build Path on the left, then the Add External Jar files. Browse to the directory with your JNA files and add those two files.

How do I include java stuff in .jar files?

Okay. So here's my question: I am making a data parser in Clojure. One part of my program is that it has to be able to graph the data. I figure, I'll use jFreeChart. However, I have absolutely NO IDEA how to include stuff in JAR files. What I mean is: if I have a app.jar file in my classpath, I don't seem to be able to do:
import app.thing.thing2
without changing the classpath to be inside the jar file.
The idea here is that I don't think I can change my classpath since I need to set it to run Clojure (Or do I?). The global classpath is currently /usr/share/java.
And please don't ask me to use Maven, Ant or any project-building tool unless it is the only way to do this. This is a script for personal use that doesn't need or want a whole lot of overhead.
I wonder if I should just unpack every JAR file, so that I can reference the directory structure? Is this bad?
Let me know if you need any clarifications!
The content of the (Java) CLASSPATH environment variable is available to Clojure so if you add your jar to the global classpath before to run Clojure, you'll "see" it:
export CLASSPATH=/path/to/jfreechart.jar:$CLASSPATH
But, in my opinion, this is not the "clean" way to add a jar to Clojure's classpath (because this makes the library visible to any Java program and may not be desired). Instead, you should use the CLOJURE_EXT environment variable. This is how this variable is documented:
# CLOJURE_EXT The path to a directory containing (either directly or as
# symbolic links) jar files and/or directories whose paths
# should be in Clojure's classpath. The value of the
# CLASSPATH environment variable for Clojure will be a list
# of these paths followed by the previous value of CLASSPATH
# (if any).
On my system, it is defined as below:
export CLOJURE_EXT=~/.clojure
So, to add jfreechart.jar (or any other library) to Clojures's classpath, copy it (or add a symlink pointing to it) in the directory defined in the CLOJURE_EXT variable.
And by the way (I'm sorry but your question is not that clear), if you want to bundle some Java classes into a jar, the command is something like that:
$ jar cf myjarfile *.class
You'll find documentation of jar - the Java Archive Tool - here.
I completely respect your desire not to use a project management tool, though I just spent longer typing this sentence than it takes to set up leiningen. For your one-off script any tool is going to be overkill and Pascal Thivent's answer covers this very well. For people reading this question who perhaps want to produce a jar file, or easily load their Clojure into emacs/slime-swank I cant recommend leiningen too strongly.
If you going to basics you can inline your classpath to include the hardcoded location of your jars, so if you on windows it will look something like
java -cp .;%CLASSPATH%;C:/here/it/is/foo.jar com.foo.MyClass
Not sure how clojure is run, but don't you just add the jar file to the classpath?
i.e.
/usr/share/java:/home/user/myjarfile.jar

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