Develop Reference

Caused by: java.lang.NoClassDefFoundError: org/apache/log4j/Logger in XPages

In our XPages project now we have to use Quartz Scheduler. I've tried to import all necessary jars which includes the following:
c3p0-0.9.5.2
log4j-1.2.16.jar
quartz-2.3.0-SNAPSHOT.jar
quartz-jobs-2.3.0-SNAPSHOT.jar
slf4j-api-1.7.7.jar
slf4j-log4j12-1.7.7.jar
I've imported all the jars to our project but when loading a page (which doesn't even call quartz or anything) I get the following exception:
Error 500
HTTP Web Server: Command Not Handled Exception
In a log I see:
01.12.19 2:04: Exception Thrown
java.lang.RuntimeException: com.ibm.xsp.FacesExceptionEx: org.apache.commons.logging.LogConfigurationException: java.lang.reflect.InvocationTargetException
at com.ibm.designer.runtime.domino.adapter.ComponentModule.initModule(ComponentModule.java:473)
at com.ibm.domino.xsp.module.nsf.NSFComponentModule.initModule(NSFComponentModule.java:498)
at com.ibm.domino.xsp.module.nsf.NSFService.createNSFModule(NSFService.java:752)
at com.ibm.domino.xsp.module.nsf.NSFService.loadModule(NSFService.java:735)
at com.ibm.domino.xsp.module.nsf.NSFService.doServiceInternal(NSFService.java:588)
at com.ibm.domino.xsp.module.nsf.NSFService.doService(NSFService.java:482)
at com.ibm.designer.runtime.domino.adapter.LCDEnvironment.doService(LCDEnvironment.java:357)
at com.ibm.designer.runtime.domino.adapter.LCDEnvironment.service(LCDEnvironment.java:313)
at com.ibm.domino.xsp.bridge.http.engine.XspCmdManager.service(XspCmdManager.java:272)
Caused by: com.ibm.xsp.FacesExceptionEx: org.apache.commons.logging.LogConfigurationException: java.lang.reflect.InvocationTargetException
at com.ibm.xsp.config.CLBootStrap.initContext(CLBootStrap.java:89)
at com.ibm.xsp.config.BootStrap.init(BootStrap.java:82)
at com.ibm.xsp.config.ConfigureCoreListener.contextInitialized(ConfigureCoreListener.java:39)
at com.ibm.designer.runtime.domino.adapter.ComponentModule.initModule(ComponentModule.java:465)
... 8 more
Caused by: org.apache.commons.logging.LogConfigurationException: java.lang.reflect.InvocationTargetException
at org.apache.commons.logging.impl.LogFactoryImpl.newInstance(LogFactoryImpl.java:532)
at org.apache.commons.logging.impl.LogFactoryImpl.getInstance(LogFactoryImpl.java:272)
at org.apache.commons.logging.LogFactory.getLog(LogFactory.java:414)
at org.apache.commons.digester.Digester.<init>(Digester.java:346)
at com.sun.faces.config.ConfigureListener.digester(ConfigureListener.java:1005)
at com.sun.faces.config.ConfigureListener.contextInitialized(ConfigureListener.java:383)
at com.ibm.xsp.config.CLBootStrap.initContext(CLBootStrap.java:81)
... 11 more
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.GeneratedConstructorAccessor1791.newInstance(Unknown Source)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:57)
at java.lang.reflect.Constructor.newInstance(Constructor.java:437)
at org.apache.commons.logging.impl.LogFactoryImpl.newInstance(LogFactoryImpl.java:525)
... 17 more
Caused by: java.lang.NoClassDefFoundError: org/apache/log4j/Logger
at org.apache.commons.logging.impl.Log4JLogger.<init>(Log4JLogger.java:102)
... 21 more
I suspect that this problem is related to Axis 1.4 log4j-1.2.8.jar incompatible with XPages?
I've tried to follow the advice and added the following to java.policy (section grant codeBase):
permission java.lang.RuntimePermission "setContextClassLoader";
permission java.lang.reflect.ReflectPermission "suppressAccessChecks";
But still with no luck.
What's the problem?
Thanks in advance

I've resolved the issue by adding all logging libraries:
log4j-1.2.16.jar
slf4j-api-1.7.7.jar
slf4j-log4j12-1.7.7.jar
to lib/ext

cannot run struts2 web application on weblogic [duplicate]

This question already has an answer here:
Exception starting filter struts2 Unable to load configuration. - bean
(1 answer)
Closed 5 years ago.
I have made the struts2 web application according to the web tutorials.
It will deploy to weblogic server 10.3.6. (JDK1.6) In my developer machine, I have added the server in eclipse. But when I run it, it shows below error. I have researched in the web and tried to fix. It should be no duplicate jars found. Please help.
ERROR org.apache.struts2.dispatcher.Dispatcher - Dispatcher initialization failed
com.opensymphony.xwork2.config.ConfigurationException: Unable to load configuration.
at com.opensymphony.xwork2.config.ConfigurationManager.getConfiguration(ConfigurationManager.java:58)
at org.apache.struts2.dispatcher.Dispatcher.init_PreloadConfiguration(Dispatcher.java:374)
at org.apache.struts2.dispatcher.Dispatcher.init(Dispatcher.java:418)
at org.apache.struts2.dispatcher.ng.InitOperations.initDispatcher(InitOperations.java:69)
at org.apache.struts2.dispatcher.ng.filter.StrutsPrepareAndExecuteFilter.init(StrutsPrepareAndExecuteFilter.java:51)
at weblogic.servlet.internal.FilterManager$FilterInitAction.run(FilterManager.java:343)
at weblogic.security.acl.internal.AuthenticatedSubject.doAs(AuthenticatedSubject.java:321)
at weblogic.security.service.SecurityManager.runAs(SecurityManager.java:120)
at weblogic.servlet.internal.FilterManager.loadFilter(FilterManager.java:96)
at weblogic.servlet.internal.FilterManager.preloadFilters(FilterManager.java:57)
at weblogic.servlet.internal.WebAppServletContext.preloadResources(WebAppServletContext.java:1872)
at weblogic.servlet.internal.WebAppServletContext.start(WebAppServletContext.java:3154)
at weblogic.servlet.internal.WebAppModule.startContexts(WebAppModule.java:1518)
at weblogic.servlet.internal.WebAppModule.start(WebAppModule.java:484)
at weblogic.application.internal.flow.ModuleStateDriver$3.next(ModuleStateDriver.java:425)
at weblogic.application.utils.StateMachineDriver.nextState(StateMachineDriver.java:52)
at weblogic.application.internal.flow.ModuleStateDriver.start(ModuleStateDriver.java:119)
at weblogic.application.internal.flow.ScopedModuleDriver.start(ScopedModuleDriver.java:200)
at weblogic.application.internal.flow.ModuleListenerInvoker.start(ModuleListenerInvoker.java:247)
at weblogic.application.internal.flow.ModuleStateDriver$3.next(ModuleStateDriver.java:425)
at weblogic.application.utils.StateMachineDriver.nextState(StateMachineDriver.java:52)
at weblogic.application.internal.flow.ModuleStateDriver.start(ModuleStateDriver.java:119)
at weblogic.application.internal.flow.StartModulesFlow.activate(StartModulesFlow.java:27)
at weblogic.application.internal.BaseDeployment$2.next(BaseDeployment.java:671)
at weblogic.application.utils.StateMachineDriver.nextState(StateMachineDriver.java:52)
at weblogic.application.internal.BaseDeployment.activate(BaseDeployment.java:212)
at weblogic.application.internal.EarDeployment.activate(EarDeployment.java:59)
at weblogic.application.internal.DeploymentStateChecker.activate(DeploymentStateChecker.java:161)
at weblogic.deploy.internal.targetserver.AppContainerInvoker.activate(AppContainerInvoker.java:79)
at weblogic.deploy.internal.targetserver.operations.AbstractOperation.activate(AbstractOperation.java:569)
at weblogic.deploy.internal.targetserver.operations.ActivateOperation.activateDeployment(ActivateOperation.java:150)
at weblogic.deploy.internal.targetserver.operations.ActivateOperation.doCommit(ActivateOperation.java:116)
at weblogic.deploy.internal.targetserver.operations.StartOperation.doCommit(StartOperation.java:149)
at weblogic.deploy.internal.targetserver.operations.AbstractOperation.commit(AbstractOperation.java:323)
at weblogic.deploy.internal.targetserver.DeploymentManager.handleDeploymentCommit(DeploymentManager.java:844)
at weblogic.deploy.internal.targetserver.DeploymentManager.activateDeploymentList(DeploymentManager.java:1253)
at weblogic.deploy.internal.targetserver.DeploymentManager.handleCommit(DeploymentManager.java:440)
at weblogic.deploy.internal.targetserver.DeploymentServiceDispatcher.commit(DeploymentServiceDispatcher.java:163)
at weblogic.deploy.service.internal.targetserver.DeploymentReceiverCallbackDeliverer.doCommitCallback(DeploymentReceiverCallbackDeliverer.java:195)
at weblogic.deploy.service.internal.targetserver.DeploymentReceiverCallbackDeliverer.access$100(DeploymentReceiverCallbackDeliverer.java:13)
at weblogic.deploy.service.internal.targetserver.DeploymentReceiverCallbackDeliverer$2.run(DeploymentReceiverCallbackDeliverer.java:68)
at weblogic.work.SelfTuningWorkManagerImpl$WorkAdapterImpl.run(SelfTuningWorkManagerImpl.java:545)
at weblogic.work.ExecuteThread.execute(ExecuteThread.java:256)
at weblogic.work.ExecuteThread.run(ExecuteThread.java:221)
Caused by: com.opensymphony.xwork2.config.ConfigurationException: Unable to load bean: type: class:com.opensymphony.xwork2.ObjectFactory
at com.opensymphony.xwork2.config.providers.XmlConfigurationProvider.register(XmlConfigurationProvider.java:221)
at org.apache.struts2.config.StrutsXmlConfigurationProvider.register(StrutsXmlConfigurationProvider.java:101)
at com.opensymphony.xwork2.config.impl.DefaultConfiguration.reloadContainer(DefaultConfiguration.java:169)
at com.opensymphony.xwork2.config.ConfigurationManager.getConfiguration(ConfigurationManager.java:55)
... 43 common frames omitted
Caused by: com.opensymphony.xwork2.config.ConfigurationException: Bean type class com.opensymphony.xwork2.ObjectFactory with the name xwork has already been loaded by bean - zip:C:/Users/raymondchiu/.m2/repository/org/apache/struts/struts2-core/2.1.8/struts2-core-2.1.8.jar!/struts-default.xml:29:72
at com.opensymphony.xwork2.config.providers.XmlConfigurationProvider.register(XmlConfigurationProvider.java:205)
... 46 common frames omitted
<2017年6月9日 上午11時20分31秒 CST> <Error> <HTTP> <BEA-101165> <Could not load user defined filter in web.xml: org.apache.struts2.dispatcher.ng.filter.StrutsPrepareAndExecuteFilter.
Unable to load configuration. - bean - zip:C:/Oracle_Home/Middleware/user_projects/domains/base_domain/servers/AdminServer/tmp/_WL_user/_auto_generated_ear_/3tqe0y/war/WEB-INF/lib/struts2-core-2.1.8.jar!/struts-default.xml:29:72
at org.apache.struts2.dispatcher.Dispatcher.init(Dispatcher.java:431)
at org.apache.struts2.dispatcher.ng.InitOperations.initDispatcher(InitOperations.java:69)
at org.apache.struts2.dispatcher.ng.filter.StrutsPrepareAndExecuteFilter.init(StrutsPrepareAndExecuteFilter.java:51)
at weblogic.servlet.internal.FilterManager$FilterInitAction.run(FilterManager.java:343)
at weblogic.security.acl.internal.AuthenticatedSubject.doAs(AuthenticatedSubject.java:321)
Truncated. see log file for complete stacktrace
Caused By: Unable to load configuration. - bean - zip:C:/Oracle_Home/Middleware/user_projects/domains/base_domain/servers/AdminServer/tmp/_WL_user/_auto_generated_ear_/3tqe0y/war/WEB-INF/lib/struts2-core-2.1.8.jar!/struts-default.xml:29:72
at com.opensymphony.xwork2.config.ConfigurationManager.getConfiguration(ConfigurationManager.java:58)
at org.apache.struts2.dispatcher.Dispatcher.init_PreloadConfiguration(Dispatcher.java:374)
at org.apache.struts2.dispatcher.Dispatcher.init(Dispatcher.java:418)
at org.apache.struts2.dispatcher.ng.InitOperations.initDispatcher(InitOperations.java:69)
at org.apache.struts2.dispatcher.ng.filter.StrutsPrepareAndExecuteFilter.init(StrutsPrepareAndExecuteFilter.java:51)
Truncated. see log file for complete stacktrace
Caused By: Unable to load bean: type: class:com.opensymphony.xwork2.ObjectFactory - bean - zip:C:/Oracle_Home/Middleware/user_projects/domains/base_domain/servers/AdminServer/tmp/_WL_user/_auto_generated_ear_/3tqe0y/war/WEB-INF/lib/struts2-core-2.1.8.jar!/struts-default.xml:29:72
at com.opensymphony.xwork2.config.providers.XmlConfigurationProvider.register(XmlConfigurationProvider.java:221)
at org.apache.struts2.config.StrutsXmlConfigurationProvider.register(StrutsXmlConfigurationProvider.java:101)
at com.opensymphony.xwork2.config.impl.DefaultConfiguration.reloadContainer(DefaultConfiguration.java:169)
at com.opensymphony.xwork2.config.ConfigurationManager.getConfiguration(ConfigurationManager.java:55)
at org.apache.struts2.dispatcher.Dispatcher.init_PreloadConfiguration(Dispatcher.java:374)
Truncated. see log file for complete stacktrace
Caused By: Bean type class com.opensymphony.xwork2.ObjectFactory with the name xwork has already been loaded by bean - zip:C:/Users/raymondchiu/.m2/repository/org/apache/struts/struts2-core/2.1.8/struts2-core-2.1.8.jar!/struts-default.xml:29:72 - bean - zip:C:/Oracle_Home/Middleware/user_projects/domains/base_domain/servers/AdminServer/tmp/_WL_user/_auto_generated_ear_/3tqe0y/war/WEB-INF/lib/struts2-core-2.1.8.jar!/struts-default.xml:29:72
at com.opensymphony.xwork2.config.providers.XmlConfigurationProvider.register(XmlConfigurationProvider.java:205)
at org.apache.struts2.config.StrutsXmlConfigurationProvider.register(StrutsXmlConfigurationProvider.java:101)
at com.opensymphony.xwork2.config.impl.DefaultConfiguration.reloadContainer(DefaultConfiguration.java:169)
at igurationManager.getConfiguration(ConfigurationManager.java:55)
at org.apache.struts2.dispatcher.Dispatcher.init_PreloadConfiguration(Dispatcher.java:374)
Truncated. see log file for complete stacktracecom.opensymphony.xwork2.config.Conf
>

I have encountered this issue a few times, specifically when using WebLogic 10.3.x, Eclipse, and Maven.
The problem is that the WebLogic server plugin for Eclipse will add all dependencies to the classpath twice.
I have a workaround that may or may not work for you (depending on your application's architecture).
First, you must deploy the application as an exploded archive. You can find this setting under the WebLogic server properties in Eclipse (under the 'publishing' config node).
Second, you must deploy the application as a war project (as opposed to an ear).
Note that this is not an issue with newer versions of WebLogic. I deploy ear projects from within Eclipse all the time to WebLogic 12c without any issue. I only have the problem you describe when deploying to WebLogic 11g (10.3.x).

What is the conflict that causes lang.ClassCastException on WebLogic?

When the WebLogic server tries to auto-deploy my application I'm getting this error:
lang.ClassCastException:
weblogic.xml.jaxp.RegistryDocumentBuilderFactory cannot be cast to
javax.xml.parsers.DocumentBuilderFactory
I've done some research and some posts say that I should remove the xml-apis.jar from my classpath. This actually alleviates the problem but my application doesn't work correctly after that. So I'm wondering if there is anything else that I can do to fix this.
I'm using WebLogix 12.1.3.0.0, Java 1.7 and Spring 3.2.3.
Relevant question: ClassCastException while parsing XML with WebLogic
Full stack trace:
<Sep 20, 2016 11:21:40 AM EEST> <Warning> <HTTP> <BEA-101162> <User defined listener org.springframework.web.context.ContextLoaderListener failed: org.springframework.beans.factory.BeanDefinitionStoreException: Unexpected exception parsing XML document from ServletContext resource [/WEB-INF/applicationContext.xml]; nested exception is java.lang.ClassCastException: weblogic.xml.jaxp.RegistryDocumentBuilderFactory cannot be cast to javax.xml.parsers.DocumentBuilderFactory.
org.springframework.beans.factory.BeanDefinitionStoreException: Unexpected exception parsing XML document from ServletContext resource [/WEB-INF/applicationContext.xml]; nested exception is java.lang.ClassCastException: weblogic.xml.jaxp.RegistryDocumentBuilderFactory cannot be cast to javax.xml.parsers.DocumentBuilderFactory
at org.springframework.beans.factory.xml.XmlBeanDefinitionReader.doLoadBeanDefinitions(XmlBeanDefinitionReader.java:412)
at org.springframework.beans.factory.xml.XmlBeanDefinitionReader.loadBeanDefinitions(XmlBeanDefinitionReader.java:334)
at org.springframework.beans.factory.xml.XmlBeanDefinitionReader.loadBeanDefinitions(XmlBeanDefinitionReader.java:302)
at org.springframework.beans.factory.support.AbstractBeanDefinitionReader.loadBeanDefinitions(AbstractBeanDefinitionReader.java:174)
at org.springframework.beans.factory.support.AbstractBeanDefinitionReader.loadBeanDefinitions(AbstractBeanDefinitionReader.java:209)
Truncated. see log file for complete stacktrace
Caused By: java.lang.ClassCastException: weblogic.xml.jaxp.RegistryDocumentBuilderFactory cannot be cast to javax.xml.parsers.DocumentBuilderFactory
at javax.xml.parsers.DocumentBuilderFactory.newInstance(Unknown Source)
at org.springframework.beans.factory.xml.DefaultDocumentLoader.createDocumentBuilderFactory(DefaultDocumentLoader.java:89)
at org.springframework.beans.factory.xml.DefaultDocumentLoader.loadDocument(DefaultDocumentLoader.java:70)
at org.springframework.beans.factory.xml.XmlBeanDefinitionReader.doLoadBeanDefinitions(XmlBeanDefinitionReader.java:388)
at org.springframework.beans.factory.xml.XmlBeanDefinitionReader.loadBeanDefinitions(XmlBeanDefinitionReader.java:334)
Truncated. see log file for complete stacktrace
>
<Sep 20, 2016 11:21:40 AM EEST> <Error> <HTTP> <BEA-101216> <Servlet: "spring-dispatcher" failed to preload on startup in Web application: "nsi-client.war".
org.springframework.beans.factory.BeanDefinitionStoreException: Unexpected exception parsing XML document from ServletContext resource [/WEB-INF/applicationContext.xml]; nested exception is java.lang.ClassCastException: weblogic.xml.jaxp.RegistryDocumentBuilderFactory cannot be cast to javax.xml.parsers.DocumentBuilderFactory
at org.springframework.beans.factory.xml.XmlBeanDefinitionReader.doLoadBeanDefinitions(XmlBeanDefinitionReader.java:412)
at org.springframework.beans.factory.xml.XmlBeanDefinitionReader.loadBeanDefinitions(XmlBeanDefinitionReader.java:334)
at org.springframework.beans.factory.xml.XmlBeanDefinitionReader.loadBeanDefinitions(XmlBeanDefinitionReader.java:302)
at org.springframework.beans.factory.support.AbstractBeanDefinitionReader.loadBeanDefinitions(AbstractBeanDefinitionReader.java:174)
at org.springframework.beans.factory.support.AbstractBeanDefinitionReader.loadBeanDefinitions(AbstractBeanDefinitionReader.java:209)
Truncated. see log file for complete stacktrace
Caused By: java.lang.ClassCastException: weblogic.xml.jaxp.RegistryDocumentBuilderFactory cannot be cast to javax.xml.parsers.DocumentBuilderFactory
at javax.xml.parsers.DocumentBuilderFactory.newInstance(Unknown Source)
at org.springframework.beans.factory.xml.DefaultDocumentLoader.createDocumentBuilderFactory(DefaultDocumentLoader.java:89)
at org.springframework.beans.factory.xml.DefaultDocumentLoader.loadDocument(DefaultDocumentLoader.java:70)
at org.springframework.beans.factory.xml.XmlBeanDefinitionReader.doLoadBeanDefinitions(XmlBeanDefinitionReader.java:388)
at org.springframework.beans.factory.xml.XmlBeanDefinitionReader.loadBeanDefinitions(XmlBeanDefinitionReader.java:334)
Truncated. see log file for complete stacktrace
>
<Sep 20, 2016 11:21:40 AM EEST> <Warning> <HTTP> <BEA-101162> <User defined listener org.springframework.web.context.ContextLoaderListener failed: java.lang.IllegalStateException: BeanFactory not initialized or already closed - call 'refresh' before accessing beans via the ApplicationContext.
java.lang.IllegalStateException: BeanFactory not initialized or already closed - call 'refresh' before accessing beans via the ApplicationContext
at org.springframework.context.support.AbstractRefreshableApplicationContext.getBeanFactory(AbstractRefreshableApplicationContext.java:171)
at org.springframework.context.support.AbstractApplicationContext.destroyBeans(AbstractApplicationContext.java:1090)
at org.springframework.context.support.AbstractApplicationContext.doClose(AbstractApplicationContext.java:1064)
at org.springframework.context.support.AbstractApplicationContext.close(AbstractApplicationContext.java:1010)
at org.springframework.web.context.ContextLoader.closeWebApplicationContext(ContextLoader.java:559)
Truncated. see log file for complete stacktrace
>
<Sep 20, 2016 11:21:40 AM EEST> <Error> <Deployer> <BEA-149231> <Unable to set the activation state to true for the application "nsi-client".
weblogic.application.ModuleException: java.lang.ClassCastException: weblogic.xml.jaxp.RegistryDocumentBuilderFactory cannot be cast to javax.xml.parsers.DocumentBuilderFactory
at weblogic.application.internal.ExtensibleModuleWrapper.start(ExtensibleModuleWrapper.java:140)
at weblogic.application.internal.flow.ModuleListenerInvoker.start(ModuleListenerInvoker.java:124)
at weblogic.application.internal.flow.ModuleStateDriver$3.next(ModuleStateDriver.java:216)
at weblogic.application.internal.flow.ModuleStateDriver$3.next(ModuleStateDriver.java:211)
at weblogic.application.utils.StateMachineDriver.nextState(StateMachineDriver.java:42)
Truncated. see log file for complete stacktrace
Caused By: java.lang.ClassCastException: weblogic.xml.jaxp.RegistryDocumentBuilderFactory cannot be cast to javax.xml.parsers.DocumentBuilderFactory
at javax.xml.parsers.DocumentBuilderFactory.newInstance(Unknown Source)
at org.springframework.beans.factory.xml.DefaultDocumentLoader.createDocumentBuilderFactory(DefaultDocumentLoader.java:89)
at org.springframework.beans.factory.xml.DefaultDocumentLoader.loadDocument(DefaultDocumentLoader.java:70)
at org.springframework.beans.factory.xml.XmlBeanDefinitionReader.doLoadBeanDefinitions(XmlBeanDefinitionReader.java:388)
at org.springframework.beans.factory.xml.XmlBeanDefinitionReader.loadBeanDefinitions(XmlBeanDefinitionReader.java:334)
Truncated. see log file for complete stacktrace
>

Place your xml-apis.jar to $JRE_HOME/lib/endorsed
$JRE_HOME is the directory where your weblogic JRE (JDK) is located

Weblogic 12c web service generates null pointer exception on deployment

When upgrading to weblogic 12c from 10.3 we are getting the following null pointer exception on deployment for our web service. The same web service works fine in weblogic 10.3. I am using wsgen to build the webservice. I am also using java 1.7, but have tried the same with 1.6
com.sun.xml.ws.transport.http.servlet.WSServletContextListener parseAdaptersAndCreateDelegate
SEVERE: WSSERVLET11: failed to parse runtime descriptor java.lang.NullPointerException
java.lang.NullPointerException
at org.eclipse.persistence.jaxb.compiler.SchemaGenerator.addSchemaComponents(SchemaGenerator.java:206)
at org.eclipse.persistence.jaxb.compiler.SchemaGenerator.generateSchema(SchemaGenerator.java:144)
at org.eclipse.persistence.jaxb.compiler.SchemaGenerator.generateSchema(SchemaGenerator.java:132)
at org.eclipse.persistence.jaxb.compiler.Generator.generateSchemaFiles(Generator.java:209)
at org.eclipse.persistence.jaxb.JAXBContext.generateSchema(JAXBContext.java:242)
at org.eclipse.persistence.jaxb.JAXBContext.generateSchema(JAXBContext.java:215)
at com.sun.xml.ws.db.toplink.JAXBContextWrapper.generateSchema(JAXBContextWrapper.java:116)
at com.sun.xml.ws.wsdl.writer.WSDLGenerator.generateTypes(WSDLGenerator.java:433)
at com.sun.xml.ws.wsdl.writer.WSDLGenerator.generateDocument(WSDLGenerator.java:409)
at com.sun.xml.ws.wsdl.writer.WSDLGenerator.doGeneration(WSDLGenerator.java:306)
at com.sun.xml.ws.db.DatabindingImpl.generateWSDL(DatabindingImpl.java:224)
at com.sun.xml.ws.server.EndpointFactory.generateWSDL(EndpointFactory.java:528)
at com.sun.xml.ws.server.EndpointFactory.createEndpoint(EndpointFactory.java:240)
at com.sun.xml.ws.api.server.WSEndpoint.create(WSEndpoint.java:546)
at com.sun.xml.ws.api.server.WSEndpoint.create(WSEndpoint.java:525)
at com.sun.xml.ws.transport.http.DeploymentDescriptorParser.parseAdapters(DeploymentDescriptorParser.java:257)
at com.sun.xml.ws.transport.http.DeploymentDescriptorParser.parse(DeploymentDescriptorParser.java:151)
at com.sun.xml.ws.transport.http.servlet.WSServletContextListener.parseAdaptersAndCreateDelegate(WSServletContextListener.java:131)
at com.sun.xml.ws.transport.http.servlet.WSServletContextListener.contextInitialized(WSServletContextListener.java:152)
at weblogic.servlet.internal.EventsManager$FireContextListenerAction.run(EventsManager.java:582)
at weblogic.security.acl.internal.AuthenticatedSubject.doAs(AuthenticatedSubject.java:321)
at weblogic.security.service.SecurityManager.runAs(SecurityManager.java:120)
at weblogic.servlet.provider.WlsSubjectHandle.run(WlsSubjectHandle.java:57)
at weblogic.servlet.internal.EventsManager.executeContextListener(EventsManager.java:233)
at weblogic.servlet.internal.EventsManager.notifyContextCreatedEvent(EventsManager.java:190)
at weblogic.servlet.internal.EventsManager.notifyContextCreatedEvent(EventsManager.java:175)
at weblogic.servlet.internal.WebAppServletContext.preloadResources(WebAppServletContext.java:1730)
at weblogic.servlet.internal.WebAppServletContext.start(WebAppServletContext.java:2740)
at weblogic.servlet.internal.WebAppModule.startContexts(WebAppModule.java:1704)
at weblogic.servlet.internal.WebAppModule.start(WebAppModule.java:781)
at weblogic.application.internal.flow.ModuleStateDriver$3.next(ModuleStateDriver.java:213)
at weblogic.application.internal.flow.ModuleStateDriver$3.next(ModuleStateDriver.java:208)
at weblogic.application.utils.StateMachineDriver.nextState(StateMachineDriver.java:35)
at weblogic.application.internal.flow.ModuleStateDriver.start(ModuleStateDriver.java:70)
at weblogic.application.internal.flow.ScopedModuleDriver.start(ScopedModuleDriver.java:212)
at weblogic.application.internal.ExtensibleModuleWrapper.start(ExtensibleModuleWrapper.java:111)
at weblogic.application.internal.flow.ModuleListenerInvoker.start(ModuleListenerInvoker.java:124)
at weblogic.application.internal.flow.ModuleStateDriver$3.next(ModuleStateDriver.java:213)
at weblogic.application.internal.flow.ModuleStateDriver$3.next(ModuleStateDriver.java:208)
at weblogic.application.utils.StateMachineDriver.nextState(StateMachineDriver.java:35)
at weblogic.application.internal.flow.ModuleStateDriver.start(ModuleStateDriver.java:70)
at weblogic.application.internal.flow.StartModulesFlow.activate(StartModulesFlow.java:24)
at weblogic.application.internal.BaseDeployment$2.next(BaseDeployment.java:729)
at weblogic.application.utils.StateMachineDriver.nextState(StateMachineDriver.java:35)
at weblogic.application.internal.BaseDeployment.activate(BaseDeployment.java:258)
at weblogic.application.internal.EarDeployment.activate(EarDeployment.java:61)
at weblogic.application.internal.DeploymentStateChecker.activate(DeploymentStateChecker.java:165)
at weblogic.deploy.internal.targetserver.AppContainerInvoker.activate(AppContainerInvoker.java:79)
at weblogic.deploy.internal.targetserver.BasicDeployment.activate(BasicDeployment.java:192)
at weblogic.deploy.internal.targetserver.BasicDeployment.activateFromServerLifecycle(BasicDeployment.java:369)
at weblogic.management.deploy.internal.DeploymentAdapter$1.doActivate(DeploymentAdapter.java:51)
at weblogic.management.deploy.internal.DeploymentAdapter.activate(DeploymentAdapter.java:200)
at weblogic.management.deploy.internal.AppTransition$2.transitionApp(AppTransition.java:30)
at weblogic.management.deploy.internal.ConfiguredDeployments.transitionApps(ConfiguredDeployments.java:240)
at weblogic.management.deploy.internal.ConfiguredDeployments.activate(ConfiguredDeployments.java:169)
at weblogic.management.deploy.internal.ConfiguredDeployments.deploy(ConfiguredDeployments.java:123)
at weblogic.management.deploy.internal.DeploymentServerService.resume(DeploymentServerService.java:186)
at weblogic.management.deploy.internal.DeploymentServerService.start(DeploymentServerService.java:94)
at weblogic.t3.srvr.SubsystemRequest.run(SubsystemRequest.java:64)
at weblogic.work.ExecuteThread.execute(ExecuteThread.java:256)
at weblogic.work.ExecuteThread.run(ExecuteThread.java:221)

I ran into this issue and discovered that I had included two (2) Weblogic 10 files in my WAR file which cause this issue; weblogic-10.3.6.jar and wlfullclient-10.3.6.jar.
Once I removed the, it started up fine.

Problem with running CXF on Weblogic 10.3.5 /w SOA server

I deployed a CXF Web Service war file on a Weblogic 10.3.5 with OracleSOA server, and I got following exceptions. I tested the war file on another Weblogic without OracleSOA without server and work fine.
<Jul 28, 2011 3:08:31 PM HKT> <Warning> <Deployer> <BEA-149078> <Stack trace for message 149004
weblogic.application.ModuleException:
at weblogic.servlet.internal.WebAppModule.startContexts(WebAppModule.java:1510)
at weblogic.servlet.internal.WebAppModule.start(WebAppModule.java:482)
at weblogic.application.internal.flow.ModuleStateDriver$3.next(ModuleStateDriver.java:425)
at weblogic.application.utils.StateMachineDriver.nextState(StateMachineDriver.java:52)
at weblogic.application.internal.flow.ModuleStateDriver.start(ModuleStateDriver.java:119)
Truncated. see log file for complete stacktrace
Caused By: java.lang.NoSuchMethodException: oracle.j2ee.ws.wsdl.extensions.soap.SOAPBindingImpl.getElementType()
at java.lang.Class.getDeclaredMethod(Class.java:1937)
at org.apache.cxf.tools.common.ExtensionInvocationHandler.invoke(ExtensionInvocationHandler.java:41)
at $Proxy607.getElementType(Unknown Source)
at org.apache.cxf.jaxws.support.JaxWsEndpointImpl.hasUsingAddressing(JaxWsEndpointImpl.java:240)
at org.apache.cxf.jaxws.support.JaxWsEndpointImpl.extractWsdlExtensibilities(JaxWsEndpointImpl.java:201)
Truncated. see log file for complete stacktrace
>
<Jul 28, 2011 3:08:31 PM HKT> <Error> <Console> <BEA-240003> <Console encountered the following error weblogic.application.ModuleException:
at weblogic.servlet.internal.WebAppModule.startContexts(WebAppModule.java:1510)
at weblogic.servlet.internal.WebAppModule.start(WebAppModule.java:482)
at weblogic.application.internal.flow.ModuleStateDriver$3.next(ModuleStateDriver.java:425)
at weblogic.application.utils.StateMachineDriver.nextState(StateMachineDriver.java:52)
at weblogic.application.internal.flow.ModuleStateDriver.start(ModuleStateDriver.java:119)
at weblogic.application.internal.flow.ScopedModuleDriver.start(ScopedModuleDriver.java:200)
at weblogic.application.internal.flow.ModuleListenerInvoker.start(ModuleListenerInvoker.java:247)
at weblogic.application.internal.flow.ModuleStateDriver$3.next(ModuleStateDriver.java:425)
at weblogic.application.utils.StateMachineDriver.nextState(StateMachineDriver.java:52)
at weblogic.application.internal.flow.ModuleStateDriver.start(ModuleStateDriver.java:119)
at weblogic.application.internal.flow.StartModulesFlow.activate(StartModulesFlow.java:27)
at weblogic.application.internal.BaseDeployment$2.next(BaseDeployment.java:636)
at weblogic.application.utils.StateMachineDriver.nextState(StateMachineDriver.java:52)
at weblogic.application.internal.BaseDeployment.activate(BaseDeployment.java:205)
at weblogic.application.internal.SingleModuleDeployment.activate(SingleModuleDeployment.java:43)
at weblogic.application.internal.DeploymentStateChecker.activate(DeploymentStateChecker.java:161)
at weblogic.deploy.internal.targetserver.AppContainerInvoker.activate(AppContainerInvoker.java:79)
at weblogic.deploy.internal.targetserver.operations.AbstractOperation.activate(AbstractOperation.java:569)
at weblogic.deploy.internal.targetserver.operations.ActivateOperation.activateDeployment(ActivateOperation.java:150)
at weblogic.deploy.internal.targetserver.operations.ActivateOperation.doCommit(ActivateOperation.java:116)
at weblogic.deploy.internal.targetserver.operations.AbstractOperation.commit(AbstractOperation.java:323)
at weblogic.deploy.internal.targetserver.DeploymentManager.handleDeploymentCommit(DeploymentManager.java:844)
at weblogic.deploy.internal.targetserver.DeploymentManager.activateDeploymentList(DeploymentManager.java:1253)
at weblogic.deploy.internal.targetserver.DeploymentManager.handleCommit(DeploymentManager.java:440)
at weblogic.deploy.internal.targetserver.DeploymentServiceDispatcher.commit(DeploymentServiceDispatcher.java:163)
at weblogic.deploy.service.internal.targetserver.DeploymentReceiverCallbackDeliverer.doCommitCallback(DeploymentReceiverCallbackDeliverer.java:195)
at weblogic.deploy.service.internal.targetserver.DeploymentReceiverCallbackDeliverer.access$100(DeploymentReceiverCallbackDeliverer.java:13)
at weblogic.deploy.service.internal.targetserver.DeploymentReceiverCallbackDeliverer$2.run(DeploymentReceiverCallbackDeliverer.java:68)
at weblogic.work.SelfTuningWorkManagerImpl$WorkAdapterImpl.run(SelfTuningWorkManagerImpl.java:528)
at weblogic.work.ExecuteThread.execute(ExecuteThread.java:209)
at weblogic.work.ExecuteThread.run(ExecuteThread.java:178)
Caused by: java.lang.NoSuchMethodException: oracle.j2ee.ws.wsdl.extensions.soap.SOAPBindingImpl.getElementType()
at java.lang.Class.getDeclaredMethod(Class.java:1937)
at org.apache.cxf.tools.common.ExtensionInvocationHandler.invoke(ExtensionInvocationHandler.java:41)
at $Proxy607.getElementType(Unknown Source)
at org.apache.cxf.jaxws.support.JaxWsEndpointImpl.hasUsingAddressing(JaxWsEndpointImpl.java:240)
at org.apache.cxf.jaxws.support.JaxWsEndpointImpl.extractWsdlExtensibilities(JaxWsEndpointImpl.java:201)
at org.apache.cxf.jaxws.support.JaxWsEndpointImpl.<init>(JaxWsEndpointImpl.java:191)
at org.apache.cxf.jaxws.support.JaxWsServiceFactoryBean.createEndpoint(JaxWsServiceFactoryBean.java:235)
at org.apache.cxf.frontend.AbstractWSDLBasedEndpointFactory.createEndpoint(AbstractWSDLBasedEndpointFactory.java:166)
at org.apache.cxf.frontend.ServerFactoryBean.create(ServerFactoryBean.java:157)
at org.apache.cxf.jaxws.JaxWsServerFactoryBean.create(JaxWsServerFactoryBean.java:202)
at org.apache.cxf.jaxws.EndpointImpl.getServer(EndpointImpl.java:433)
at org.apache.cxf.jaxws.EndpointImpl.doPublish(EndpointImpl.java:322)
at org.apache.cxf.jaxws.EndpointImpl.publish(EndpointImpl.java:239)
at org.apache.cxf.jaxws.EndpointImpl.publish(EndpointImpl.java:509)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeCustomInitMethod(AbstractAutowireCapableBeanFactory.java:1544)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1485)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1417)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:519)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:456)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:291)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:288)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:190)
at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:580)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:895)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:425)
at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:276)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:197)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:47)
at weblogic.servlet.internal.EventsManager$FireContextListenerAction.run(EventsManager.java:481)
at weblogic.security.acl.internal.AuthenticatedSubject.doAs(AuthenticatedSubject.java:321)
at weblogic.security.service.SecurityManager.runAs(SecurityManager.java:120)
at weblogic.servlet.internal.EventsManager.notifyContextCreatedEvent(EventsManager.java:181)
at weblogic.servlet.internal.WebAppServletContext.preloadResources(WebAppServletContext.java:1872)
at weblogic.servlet.internal.WebAppServletContext.start(WebAppServletContext.java:3153)
at weblogic.servlet.internal.WebAppModule.startContexts(WebAppModule.java:1508)
I have added following lines to weblogic.xml, but can't fix the problem:
<wls:container-descriptor>
<wls:prefer-web-inf-classes>true</wls:prefer-web-inf-classes>
</wls:container-descriptor>
How to fix this problem, because the war file suppose deploy on the SOA Weblogic server?

Package the juddiv3 plus cxf war as an ear
Add the following deployment descriptors to the ear
file "META-INF/application.xml" :
<?xml version="1.0" encoding="UTF-8"?>
<application xmlns="http://java.sun.com/xml/ns/javaee"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="5"
xsi:schemaLocation="http://java.sun.com/xml/ns/javaee http://java.sun.com/xml/ns/javaee/application_5.xsd">
<display-name>juddiv3</display-name>
<module>
<web>
<web-uri>juddiv3</web-uri>
<context-root>juddiv3</context-root>
</web>
</module>
</application>
file "META.INF/weblogic-application.xml" :
<?xml version="1.0" encoding="UTF-8"?>
<wls:weblogic-application xmlns:wls="http://www.bea.com/ns/weblogic/weblogic-application" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://java.sun.com/xml/ns/javaee http://java.sun.com/xml/ns/javaee/javaee_5.xsd http://www.bea.com/ns/weblogic/weblogic-application http://www.bea.com/ns/weblogic/weblogic-application/1.0/weblogic-application.xsd">
<wls:application-param>
<wls:param-name>webapp.encoding.default</wls:param-name>
<wls:param-value>UTF-8</wls:param-value>
</wls:application-param>
<wls:prefer-application-packages>
<wls:package-name>javax.wsdl.*</wls:package-name>
<!-- If using hibernate also add this
<wls:package-name>antlr.*</wls:package-name>
-->
</wls:prefer-application-packages>
</wls:weblogic-application>

A similar issue reported with CXF and Weblogic 10.3.3 says the error is because Oracle loads it's own wsdl4j and instead use one from within your war. Is wsdl4j jar present in the WEB-INF/lib of your war?
Only then will wls:prefer-web-inf-classes be effective.
Otherwise CXF recommends packaging your war as an ear on Weblogic, add a weblogic-application.xml (Weblogic specific) in the META-INF folder and using
<prefer-application-packages>
Can you try the first approach and then the second?