Eclipse Kepler freezes when saving - java

I have recently had a problem with Eclipse. I am developing a java application. It suddenly freezes whenever I try to save a file. Indeed, it happens to some files in my project while it works fine with the others. I have checked the .log file in my workspace and there is no error message! I tried to disconnect my project from GIT, but the problem persisted. It drives me crazy. I have to restart Eclipse many times everyday.
Any solution would be greatly appreciated.

Such kind of issues should provide all related info: OS, Java, Eclipse version, list of plugins installed. Example of file saved. CPU, RAM size, memory setting for Eclipse.
Without knowing those details some recommendation would be to analyze and try to find the cause by comparing:
try on other PC,
with other Java version
other Eclipse version
the same Eclipse version without any additional plugins.
increase Eclipse memory settings
Check if it is build related by disabling automatic build.
Check if there are "Save Action" configured in Preferences.
and so on.
maybe some plugin causes that, but usually people just go with new Eclipse instance instead of comparing different plugins combinations.
See also How can you speed up Eclipse?

Eventually, it's worked. I created a new workspace and import it my project to it. Everything works well since then, like a magic! It seems the problem occurred because my workspace was too old. I have been working on the same workspace since more than 2 years.
Thanks fellows for your time to help.

Related

Eclipse extremely slow, continuously blocked in NonEssentialElementsFilter.hasFilteredChildren

I have a long-lasting problem with eclipse, quite blocking, that started after eclipse Luna (no problem with Luna). For example, this problem is occurring with the most recent version of eclipse, whatever performance options I change (advised by other answers from stackoverflow).
With my quite big project (thousands of classes), eclipse is very slow (stuck several minutes or tens of minutes) quite randomly, when I open it, but later when I open project tree nodes, when I refresh, update the SVN working copy, etc.
Using JVisualVM, I can see that all the time is spent in org.eclipse.jdt.internal.ui.navigator.NonEssentialElementsFilter.hasFilteredChildren and, in fact, in org.eclipse.jdt.internal.core.PackageFragment.getElementName and
org.eclipse.jdt.internal.core.util.Util.concatWith...
I tried a lot of things (decorations, antivirus, breakpoints, recreating a new project, ...) but nothing helps.
And with Luna or previous versions, I did not have any problem like this. And I tried with a lot of newer versions, Mars, Neon JAVA only, Neon JEE, etc., they all have the same problem.
I hope someone can help, because it is quite blocking!
Agree with the workaround of using Package Explorer.
Another workaround if you are set on Project Explorer, is to disable the options that seem to be causing the contention. In Project Explorer "settings" (downward facing triangle to the right), go to Filters and Customization / Content. Then uncheck everything except Java Elements. That helped for me - but I eventually just switched to Package Explorer.
This seems to be a known problem (see Eclipse bug 506009) which has not yet been fixed.
As a workaround use the Package Explorer instead of the Project Explorer.
Update: The Bug has been fixed in the meantime. Upgrading to Oxygen.3 (released on March 21, 2018) should fix the problem.

Why is IntelliJ IDEA hanging on "Indexing"?

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I'm running on Arch Linux, on an i7-5930k 6 core CPU and 64GB of DDR4 RAM, and I'm using IntelliJ IDEA 14.
IDEA was working just fine for me several days ago, but one day, suddenly, it began hanging after opening a project, during the "Indexing" stage. I did not update IDEA and nothing changed about my projects. The IDE's UI hangs after it opens the project, with just a tiny little sliver of the progress bar for "Indexing" complete. Every 5-10 minutes or so it unfreezes and the progress bar crawls forward a little bit, before the IDE freezes again for another few minutes. This happens repeatedly for anywhere between 15 minutes and an hour, until it is finally finished indexing, at which point it hangs for another 5-10 minutes doing nothing, before it finally unlocks and allows me to develop.
While this is happening, my system is fairly unresponsive - Firefox tabs take a long time to switch, and scrolling in them is laggy. Opening a new terminal window takes a long time. Switching windows in general takes awhile. In htop, one of my CPU cores is loaded at 100% while the rest have a normal load, and about 6GB of RAM is used (fairly normal load when this system is idle.)
Things I have tried that have not helped:
Delete caches folder
Delete entire ~/.IntelliJIDEA14 folder
Reinstall IntelliJ package
Download IntelliJ manually from JetBrains' site and run it from my Downloads folder (to see if there was something wrong with the Arch AUR package)
Configure IntelliJ to use my system JVM and Maven for importing instead of its embedded tools
Opening multiple different projects (not just the one I initially experienced the issue on.)
This issue is really hurting my workflow, if anybody has any solution to this I would be very greatful.
Try Invalidating the cache and restarting IntelliJ.
In the File menu, select Invalidate Caches / Restart... and then click the Invalidate and Restart button.
I've finally figured it out. The solution was... Rather odd. TL;DR: Run it under strace. Read on for a more detailed explanation.
I came upon it when I decided to run IntelliJ under strace to see what files it was opening to determine whether or not it was a filesystem bottleneck.
This gave me some very strange results: strace was spewing out a near-constant stream of segfaults. Not only that, but IntelliJ was running just fine, not taking forever to index.
After consulting with a friend, I learned that on Arch Linux, systemd logs a dump of a process's memory every time a segfault occurs, except when a debugger is attached. strace is considered a debugger. Arch was thrashing my disks when it kept logging memory dumps due to all the segfaults, hence why the indexing was taking so long, because it was fighting for disk I/O.
My solution for now is to simply run IntelliJ under strace. I will, however, be looking into the issue further, as I don't think java should be segfaulting that much.
edit Intellij[VERSION]/bin/idea.properties,
set idea.max.intellisense.filesize=50
update:
Intellij will skip index files that size larger than 50kb.try this if you have many libraries or many large files(too many characters one line or too many lines)
I had this issue as well with version 2016.2 on Mac OS X. I had to do a force quit to end the application, then I deleted the .idea folder. The next time I launched IntelliJ everything worked fine, it had no problem indexing the project.
I was stuck with a similar issue with the latest IntelliJ Idea 2019.3, so maybe it'll help. For me the issue was with one of the plugins, uninstalling/reinstalling, cleaning caches didn't help. My steps were:
Kill intellij, start it over
When it's starting and about to load a project, be quick and cancel opening the project. This way you'll end up with a small window with a list of previously opened projects and a few menu items.
Open menu > plugins, disable them all
Restart intellij idea, open any project.
If step 4 above succeeds (which happened to me), one by one try enabling the plugins to see which one is causing error. For me it was Kubernetes plugin from JetBrains.
Select Help -> Debug Log Settings...
Add the following line (note the leading # symbol)
#com.intellij.util.indexing:trace
Relaunch the IDE (don't need to invalidate cache as that will cause it to start from scratch, whereas restarting from the point of failure, for me anyway, reported the problem file as soon as I restarted):
Scheduling indexing of file://C:/dev/tools/ruby/lib/ruby/2.2.0/x64-mingw32/win32ole.so by request of index Stubs
Our project doesn't use win32ole so I moved the file to a safe location and restarted my IDE... Bingo, problem gone, indexing finally completed after almost 1 year of effectively using intellij as a slightly-smarter-than-notepad ruby editor.
In my case I found out that Intellij is actually trying to index a 50GB directory with logs that was under the project's root. Make sure that if you have such a directory, it is marked as "Excluded" in the IDE.
You can see which file the IDE is indexing currently in the Indexing Status window (access by clicking on the indexing message in the toolbar). You may need to enlarge this window to see the full path of the file currently being indexed.
In PhpStorm, what solved this for me was excluding folders I didn't need to be indexed from the indexing (specifically the vendor folder, a caches folder, and a few asset folders that contained thousands of images). Instantly it began making progress and completed.
To do this:
in the project directory list, right click the folder you want to exclude
Mark Directory As
Excluded
seems that there might be several reasons for getting into this "indexing" hell. I spent few hours trying to fix it using the ideas above.
At the end of the day, with some profiling work, I found that the bad guy in my case was the csv plugin:
https://plugins.jetbrains.com/plugin/10037-csv-plugin
I had few (not so large) CSV files serving as input, and although I marked them as not to be indexed, the plugin kept trying to index them.
Once I removed the plugin everything worked fine.
Disabling unused plugins will improve the indexing. In my case I have disabled Kotlin plugin from File -> Settings->Plugins
if you check the intellij logs (can be found under C:\Users<User Name>.IntelliJIdea2019.1\system\log ) you will get a pointer what is failing. I was getting an error in Kotlin. After disabling the plugin and restarting Intellij fixed my issue
java.lang.RuntimeException: java.io.EOFException
at com.intellij.util.ExceptionUtilRt.rethrow(ExceptionUtilRt.java:31)
at com.intellij.util.ExceptionUtil.rethrow(ExceptionUtil.java:120)
at com.intellij.openapi.vfs.newvfs.persistent.FSRecords$DbConnection.handleError(FSRecords.java:516)
at com.intellij.openapi.vfs.newvfs.persistent.FSRecords$DbConnection.access$000(FSRecords.java:153)
at com.intellij.openapi.vfs.newvfs.persistent.FSRecords.writeAndHandleErrors(FSRecords.java:965)
at com.intellij.openapi.vfs.newvfs.persistent.FSRecords.access$300(FSRecords.java:47)
at com.intellij.openapi.vfs.newvfs.persistent.FSRecords$AttributeOutputStream.close(FSRecords.java:1629)
at kotlin.io.CloseableKt.closeFinally(Closeable.kt:53)
at org.jetbrains.kotlin.idea.caches.FileAttributeServiceImpl.write(FileAttributeServiceImpl.kt:64)
at org.jetbrains.kotlin.idea.caches.FileAttributeServiceImpl.writeBooleanAttribute(FileAttributeServiceImpl.kt:48)
at org.jetbrains.kotlin.idea.caches.IDEKotlinBinaryClassCache.getKotlinBinaryClass(IDEKotlinBinaryClassCache.kt:67)
at org.jetbrains.kotlin.idea.caches.IDEKotlinBinaryClassCache.getKotlinBinaryClassHeaderData(IDEKotlinBinaryClassCache.kt:8
I had a similar problem with 2019.1.4. However, mine would change directories and sometimes, eventually, finish. If it did finish, it was somewhere in the 8-10 minute range.
I was all over SO, and even JetBrains' forums. I excluded directories via Project Structure | Modules. I used Invalidate Caches And Restart on multiple occasions. I tried having only 1 project open to let it finish. I installed and tried 2019.2.4 and 2019.3.3 (the latter would crash for other reasons). And best of all, it only seemed to happen on one project!
What ultimately led me to an answer was Help > Activity Monitor... where I found psi.impl.cache.impl.todo was running at nearly 100% CPU and not showing signs of stopping.
It turned out, I had a TODO filter setup with a poorly-defined RegEx. It was something like \b.*wip\b.*; the idea was to find all of our "WIP" values. Well, the leading .* was a huge mistake and one that didn't occur to me until losing many hours blaming a plugin upgrade. I believe the reason this was a bad filter was because the project it was hanging on is in ExtJS, which is JavaScript, which means things are in triplicate with the app.js file and whatnot...
Update
In IntelliJ 2020.x and 2021.x, the option has moved to Help > Diagnostic Tools > Activity Monitor.
Had the same issue in the past on some Scala project. I have installed IDEA 16 EAP (https://confluence.jetbrains.com/display/IDEADEV/IDEA+16+EAP) and the problem has gone.
I ran into this problem today on a Mac. It would hang before I was able to get to the menu and invalidate the cache.
I deleted the cache from command line using the following command and it worked for me.
rm -rf ~/Library/Caches/JetBrains/IntelliJIdea*
After that it started up with no issues.
I had the same problem with IntelliJ 2017.3.2. When I clicked on the indexing progress bar I noticed it was hung on a directory within my build directory. When I did a gradlew clean which removed that directory then the indexing was able to proceed.
I have encountered this problem, and resolved it:
remove idea
delete all files and dirs which name regex 'jetbrain' and 'IntelliJ' in my computer(Mac mini)
then install idea
I also try just delete idea cache files, it do not work.
I was using the Elm plugin and installed the elm-bounded-nats package which included a semi-large source file. IntelliJ kept hanging on this file, but did not always report this correctly in the indexing popover dialog (perhaps due to threading). When I exluded this specific file in Settings -> File Types ("Nats.elm") indexing managed to complete successfully. Now the editor renders errors for this package but the compilation process still works.
Invalidate Cache and Restart did not work for me on IntelliJ 2021.3 Ultimate.
I was curious to see if the new Repair IDE feature on 2021.3 Ultimate version works on this issue on my mac.
On startup, IntelliJ froze on indexing
Force quit and relaunched IntelliJ
On Startup, manually "paused" the indexing from the status bar at the bottom
Invalidated cache and restarted
Still froze on indexing
Forced quit and relaunched IntelliJ
Repeated Step #2 on startup
From File Menu, executed Repair IDE, and went through repair steps
FIXED; no longer froze on indexing
Quit IntelliJ and Relaunch
No Index issues
I was also facing freezing issue with intellij 2021.3. Earlier I was using intellij 2021.1 version and that was working fine but since I upgraded intellij version to 2021.3 it started freezing on indexing of files.
Someone in this thread suggested to repair ide using Repair IDE feature. But that didn't worked for me.
So, I went through the thread dumps available in intellij logs folder. After analyzing logs, I found out that calls are blocking on Package Search plugin. So, I disabled that plugin in settings -> plugin. To do that I had to pause indexing at start for time being. After disabling this plugin, it is working fine for me.
This is a known issue and I know disabling it is not a correct fix for it. But I will use it till intellij will release an official fix for this issue.
There might be another project opened parallelly in new window which is being indexed.
It looks like the problem can come from many different sources as other answers point out.
In my case, it was the Subversion plugin that had difficulties to communicate with the server and make the IDE to hang on indexing.
I was able to resolve this problem by removing all of my "target" folders from my project.

Netbeans project file generation extremely slow (unusable)

I've been having issues with a Java project that I've been working on for a while.
Starting about 1 or 2 weeks ago, whenever I use Netbeans (8.0.2) to generate a new file in the project (right click on package > new file), the wizard will hang for up to 10 minutes before releasing control back to me. The file is created after about 5 minutes. This doesn't happen with any other project, only this one; but I can't find anything different in my project's configuration compared to projects that work.
I created a bug report about this on the Netbeans bug tracker, but it hasn't been looked at in over a week. It has a copy of the Netbeans output log, and a profiling snapshot of the class generation.
I've tried reinstalling Netbeans (remaining at 8.0.2), which didn't help, and I don't really know what else I can do to locate the problem. If anyone has experienced anything like this, or has any advice on how I can track down the issue, it would be greatly appreciated.
Here is a link to my project on Dropbox. Feel free to download a copy, compile it, run it, etc.
I am using Windows 7 64-bit, and I am using the official Netbeans 8.0.2 from netbeans.org, launched straight from the desktop (I am not using any particular command line arguments or enviroment variables, as far as I know)
It turned out that the issue was that my Mercurial client was hanging when it made status calls, and Netbeans, due to a bug, was stuck waiting for it forever.
The issue with Mercurial can be worked around by deleting the Mercurial log file, and the bug with Netbeans was eventually fixed.

Sudden weird errors on a project

Today I came to work, happy. But when I opened my Eclipse, I saw that one of my projects has errors.It's weird because it shows that it has errors only in the window bar, and not in the Navigator. I don't have any Java errors, this is a valid project that was fine all the time:
Some of the errors on the error log of Eclipse:
JavaBuilder handling ImageBuilderInternalException while building: SP_Procedure
Cannot connect to VM
File <SomeFile> has been skipped, problem while reading ('Resource is out of sync with the file system')
Unhandled event loop exception
Internal error
When I run an application from this project, I get a warning message but when I proceed, it works fine, but still. It's very disturbing and I'm not sure if it's harmless.
I tried to:
Restart Eclipse
Restart my machine
Clean projects and recompiling them.
Refresh projects
Pray
Nothing helped. What could be the problem? (I'm using Indigo Service Release 2)
The following nuclear option has desperation written all over it. But I have been where the OP has been with the Juno version of Eclipse.
Run a "Synchronize with Repository" and save all of your local updates to a different directory.
Delete the project. (Check the box to delete the contents on disk. Scary step, but that's OK, because you saved it in a different directory in the previous step, right?)
Read in a fresh project from the repository. It builds happily at this point.
Integrate your local updates.
Keep on praying.
Looks that one unused JAR was deleted, but for some reason, I didn't get errors in any file, even in the files that imports this JAR! So what I did was restoring this JAR, delete unused imports and deleted the JAR again.
I've found this error after two days of navigating on this project on each file.. This is weird that Eclipse didn't recognize that1 this is an error, and throw many unrelated errors such as:
Cannot connect to VM
File has been skipped, problem while reading ('Resource is out of sync with the file system')
Unhandled event loop exception
Is this a bug in Eclipse? (All errors and warnings are enabled!)
1 As seen in the image in the question..
A class from the list of imports for the file seems to have moved out or the jar file containing the class is missing.
Expand the imports section and check if you find some classes that are missing but have been imported.
Though it is a pain, sometimes the easiest solution is to back up all your projects (either in a repository or somewhere else on your computer) then uninstall and reinstall eclipse. No it's not fun, but it should reset eclipse so everything works again. The downfall though is that you have to reconfigure eclipse to any special settings you had/reinatall any extra functionality currently installed (eg. android add-on) and reconnect to any repositories you have. While punting isn't fun, it can be effective... I hope you don't have to resort to this though.
I have went through that problem a lot of times, and tried everything you tried. Rebuild, recompile, refresh, remove and add JDK, remove and reinstall Eclipse... nothing worked
The only thing I concluded is that the workspace metadata was corrupted.
What I did (every time it happened) was
Create an empty workspace
Import -> existing projects into worskpace
Mark the "copy projects" (else it will only link them)
Wait for the copy, and start working with the new workspace
If you work with SCM systems (Git, SVN, etc), making a full checkout will do the trick too, but the worskpace import will let you retrieve those changes you didn't get to commit (if any).
It's a little painful if you have somethings already set (like JDK names, servers, etc), but then I realized it was faster than keep searching how to fix the workspace
Regards!
PS : I've been working with Kepler lately, and everything works fine till now
Click Window -> Show View -> Other -> General -> Problems
This view will show you what is wrong.
Did you, by any chance, update your virtual machine outside of Eclipse? I can't help but feel that we're both missing a finer detail here. I just keep seeing "cannot connect to VM" and thinking that it's a major clue.
Have you tried running anything from the terminal? Does it work there?
If so, do you know where your current edition of Java is located? Is Eclipse looking somewhere else?
Is this exclusive to one project? Do you use any additional libraries to the JDK?
Maybe try this for Resource is out of sync with the file system error:
Right click project in Eclipse Package Explorer
Close Project.
Right click project in Eclipse Package Explorer
Open Project.
Other things not mentioned:
project properties > java build path, see if any of those tabs got changed, local file got moved? read/write permissions on some file you are linking to?
project properties > java compiler, see if workplace settings have changed? maybe under errors/warnings, you can systematically set them to 'ignore' until the error goes away to determine what type of error it is?
maybe update some of the eclipse plugins?
I saw something like this happening for a number of reasons. Mainly because of validation in files other Java source code. See if you are validating XML for instance.
Right click your project and chose Properties (Alt+Enter) and Validation to see the related configuration.
As for the danger, I lived with those marks for ages and nothing wrong ever happened.

Eclipse 3.6 freeze on autocomplete/quick fix

I have a problem that seems to come up both with autocomplete and quick fix. Sometimes when I use cmd+1 for quick fix dialog, Eclipse freezes and however long I wait (30 min at least), nothing happens. When inspected in activity monitor, it seems to exhibit little to no processor activity.
I have a Mac with OSX 10.6, and Helios with no weird plugins. I program in java, so I use very standard features.
Is this a known bug? I have tried to google a lot to find useful info. I am not very good at reading bug reports though, and the concept of feature freeze kind of taints my search results.
Thanks for any help.
As for Eclipse you can not know what is happening. The whole platform is a set of plugins, and the requirements (for example responsiveness) are not strict for them. So a third party or even a bundled plugin can cause such a failure. So most of times you cannot have a clue about what is wrong. Some stuff you can do:
while hanging unplug your network connection. If you are behind a proxy for example, a plugin can wait for a long time on network io
you can check with for example resource monitor, which file eclipse opened. Some of the opened file handlers can have relation with the problem
edit .classpath file in project where code completion freezes, and it will "reset" your project stuff in eclipse
you can browse .metadata folder in eclipse workspace and you can guess which folder to remove temporaly. After removing, try if error is still present
create a new workspace and import projects into it
if new workspace do not work, then the eror is in configuration folder in eclipse root, and you can play the same thing like in step 4
use a brand new eclipse
+1. Maybe some new plugin is responsible. In eclipse Help/about/installation details/Installation history tab you can revert to some older set of plugins.
Hope it will help.
Seems that you encounter known and already fixed bug.
Issue fixed after deleting all the files in the below directory
configuration\org.eclipse.osgi\.manager
.fileTableLock
.fileTable.1
.fileTable.2
There will be fileTable lock files, delete all those files

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