Java heap full of java finalize() calls - java

My application works fine in two environments but in acceptance test environment there is a memory leak. JVM heap dump shows that the heap is 98% full of java.object.finalize() (if I remember correctly. GC logs state that GC is doing a Full GC more and more often, until the JVM gives Out of Memory -error.
What could be causing this? The application is the same in all environments but the OS and networking is slightly different in the problem environment. Java is the same on all environments. What does this output even mean, that GC has called Object Finalize() but for some reason it does not complete? I am using JBoss EAP 5.

It is possible to create garbage that requires finalization faster than it can be finalized. When an object is determined to be unreachable (i.e., eligible for collection) and requires finalization, it is added to the finalizer queue rather than being collected immediately. On the next GC following the completion of the finalizer, the object can be collected. In other words, finalization delays the recovery of memory.
There is a single thread that executes all finalize methods and by default it runs at the same priority as all the other threads. If you have many threads creating garbage that requires finalization, they can produces garbage faster than the one finalizer thread can execute the finalize() methods. Also, if you finalize methods are not fast, you just make this problem worse.
To summarize, you probably have too many and/or too slow finalize() methods to execute. It might be that in the one problem environment the finalize methods are slower? Or you have more processing power so you create garbage faster there?
I have have run into this problem in the past. To mitigate it, I raised the priority on the finalizer thread. The trick to doing this was to create a piece of garbage during initialization that overrides finalize() and changes the thread priority in the current thread during finalization. Changing the finalizer thread's priority was enough to solve the problem in that case, but is not guaranteed to do the trick.

Related

How to disable garbage collection threads in OpenJDK?

I'm working on a JVM project where I need to disable garbage collection in JVM and get the out of memory error.
When we call system.gc(), GC gets called after sometime and I also wrote a program which invokes GC without calling system.gc(). And it seems like they both follow the different call stacks while invoking GC.
I need to disable the GC for my research project purpose and how can I do that.
Where do GC threads get scheduled in the OpenJDK code for the program which doesn't call system.gc() explicitly.
I'm using OpenJDK 11.
There is no way to disable garbage collection entirely. Java 11 comes with an Epsilon(no-op garbage collector). In JEP 318:
Develop a GC that handles memory allocation but does not implement any actual memory reclamation mechanism. Once the available Java heap is exhausted, the JVM will shut down.
So, after a while will see the out of memory error. It can be enabled by the -XX:+UseEpsilonGC option at JVM start.

What is the difference between G1GC options -XX:ParallelGCThreads vs -XX:ConcGCThreads

when configuring the G1GC
we have 2 kinds of thread count
-XX:ParallelGCThreads and -XX:ConcGCThreads
what is the difference, how they are going to impact,
any reference is appreciated.
G1 algorithm has phases which some of them are "stop the world" phases that stops the application during garbage collection, and it also has phases which happens concurrently while application is running(candidate marking etc..), with that information in mind:
ParallelGCThreads option affects the number of threads used for phases when application threads are stopped, and the ConcGCThreads flag affects the number of threads used for concurrent phases.
It is the setting or precisely say JVM tuning settings... we inform JVM to use how many threads in that particular type of Garbage Collection.
I hope you are already aware of what is Garbage Collection, so when JVM runs Garbage Collection, it depends on what algorithm is set for your JVM as default collector.
You might already be knowing that there are various kind of Garbage collectors available, like G1, CMS, etc.
So, based on your setting (here, number of threads) GC algorithm will try to use that many threads for heap cleanup. While JVM runs FULL GC, it halts other threads processing.
Now suppose, your application is live and performing very heavy tasks, multiple users using it for multiple purpose (say very busy app), and JVM running FULL GC now, then in that case, all worker threads will come to a pause and GC will clean up. In this period, if all threads are acquired by JVM, then user will see delay in response. So, you can tell JVM, hey Use only that much (number) thread on that type (CMS or Parallel) of garbage collection run.
To get more on GC types and how they differ, whats suits your needs, refer some good article and docs from oracle.
Here is one reference for the options you mentioned.
-XX:ParallelGCThreads: Sets the number of threads used during parallel phases of the garbage collectors. The default value varies with the platform on which the JVM is running.
-XX:ConcGCThreads: Number of threads concurrent garbage collectors will use. The default value varies with the platform on which the JVM
is running.

Java Garbage Collector method

I am trying to understand the garbage collector method.
"In Java, your program must call the garbage collector method
frequently; otherwise your program will be overrun with garbage
objects"
I believe this is false because the program should do this automatically, running in the background correct?
Correct. In fact, there is no garbage-collector method (System.gc() is a hint that now might be a good time to garbage collect, but it's nothing more). The JVM, if it implements garbage collection (and all Java SE and Java EE ones do), will collect based on its own rules, which usually include concurrently cleaning up short-lived objects, and doing a major collection when memory starts getting low or fragmented.
While in general calling System.gc() is considered bad, bad, bad, very bad practice, in some cases this may prevent the out of memory error. This is mostly when you allocate lots of objects in a very rapid succession and have time moments when many of these are no longer referenced and can be dropped. While System.gc() is just a hint, sometimes the system may need this hint. Alternatively you may rethink you algorithm.
These situations are, however, increasingly rare with the newer Java versions; used to be more frequent in the past. The official point of view is never call garbage collector manually.
The method System.gc() does not necessarily call the Garbage Collector. Garbage Collection is dependent on JVM implementation. For Example a Linux JVM may actually call GC when you do System.gc() a Windows JVM may not.
Lets say you have too many unreachable objects in memory but you still have enough Heap space left so the JVM may decide not to run the GC thread. So conclusion "There is no guaruntee that the GC thread will run when you call System.gc() and it is not necessary to call it."
This is one of Java's main advantage the developer need not worry about Memory management and stuff. unlike C++ where you have to do something like
free(obj);

query regarding garbage collector behavior

As I read in the Sun Memory management white paper:
When stop-the-world garbage collection is performed, execution of the application is completely
suspended during the collection
So if a request happens while the garbage collector is running then how is it handled by the application? If the garbage collector takes too long will the application throw an exception? I have not come across such an issue but wanted to know is this possible and what exception gets thrown?
All (almost) Java garbage collectors has some sort of a Stop-the-world phase where all the Java threads are suspended waiting for a exclusive system operations to complete. This state is sometimes referred to as a safepoint.
The modern garbage collectors are concurrently running together with the applications threads, which means that the garbage collector perform its work at the same time as the application. During the garbage collector process there are phases where exclusive access memory is needed, the application threads goes into this safepoint state.
An exception is thrown if the garbage collector cannot recover enough memory to meet the applicationĀ“s allocation demands.
One alternative to get rid of the stop-the-world garbage collections is to go for the Zing JVM with the C4 collector from Azul systems. The implementation has a low pause approach with no stop-the-world collections at all. Instead it is using a concurrent compacting approach with no stop-the-world phase.
This garbage collector is not in use anymore and replaced by better garbage collectors.
The stop-the-world garbage collector really stopped the complete application (all threads) and cleaned up the heap.
When the garbage collector would take too long (which almost never happens) then an Error would be thrown.
Incomming traffic on network sockets is buffered for the time the collector runs.

Does the Garbage collector in Java work automatically?

I need to to know whether the Garbage Collector in Java works on its own or we do need to start it.
It works on its own. You can "suggest" that it run, but that's about it.
The GC is a deamon thread that's started with your JVM and ends when your JVM ends (JVM is stoped if no more non-deamon threads exist).
It runs in background and kicks into action when/if needed. The JVM decides when it runs and you can "request" it to run with System.gc().
But I should mention that you must not write your code to depend on the GC to run (finalizers in Java are not like destructors in C++). People tend to count to much on the GC and then forget about it which is a no-no and leads to memory leaks and hard to find bugs.
What you can count on is that before you get a java.lang.OutOfMemoryError, the GC kiked into action and did its best.
It works on its own according to an optimized algorithm to get the optimal performance. You can perform a force garbage collection but it is not recommended because it can block the normal Garbage collection pattern reducing the actual performance.
You should read this Old SO Discussion on a related topic.
Yes, garbage collection is automatically handelled by Java.
When an object is no longer referred to by any variable, Java automatically reclaims memory used by that object. This is known as garbage collection.
Still the method
System.gc() method may be used to call it explicitly.
The only occasion I know of where you have to call System.gc() is when you are creating lots of Direct ByteBuffers. For heap memory, an OutOfMemoryError will only occur after a Full GC, however for direct memory, if you run out (even though there might be buffers which are not referenced), no GC is called and so you might have to call it yourself before trying again.
I would hope this is something which is fixed in future versions of Java.
(This is probably just repeating what other answers were trying to say ... However, it is worth saying this clearly.)
The Java garbage collector runs automatically as required, and there is no need to start it.
There is a static method (System.gc()) that an application can call to request that the garbage collector run "now". However:
The JVM can be configured to pay no attention to this request.
It is generally a bad idea to make this request because it can significantly degrade garbage collector performance. Generally speaking, the best time to run the garbage collector is when there is lots of garbage to be collected, and only the JVM knows when that is likely to be.
EDIT - the cure for large garbage collection latencies is to change the JVM's garbage collector properties to select the low latency collector. Calling System.gc() is not the way to deal with this in a modern JVM.

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