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Using SpringExtension with Tomcat and Hibernate web app

We are trying to use spring-test's SpringExtension to write integration tests for our Spring and Hibernate-based Tomcat web application. Our sessionFactory bean configuration has the property configured mappingJarLocations with a sample value as /WEB-INF/lib/company-common*.jar which contains hibernate mapping files. In both actual deployment and Eclipse dev deployment, this works fine as the docBasePath (in Servlet environment) is appended to this pattern and the files are getting resolved. But this is not the case while running JUnit test cases either in a local or a CI environment.
We tried our best to use the provided support by having few overridden implementations of WebTestContextBootstraper, GenricXmlWebContextLoader, XmlWebApplicationContext, and WebDelegatingSmartContextLoader but had to finally give up as we cannot override the final method org.springframework.test.context.web.AbstractGenericWebContextLoader.loadContext(MergedContextConfiguration) to provide the custom implementation of XmlWebApplicationContext. Our current approach is to manually create the application context and use it in the tests.
Here is the project structure:
Project_WebApp
|--src/**
|--WebContent/**
|--pom.xml
When the app is packaged as Project_WebApp.war, the dependencies are inside WEB-INF/lib from the root of extracted war. When deployed as a webapp in Tomcat using Eclipse, the dependencies are copied to <Eclipse_Workspace_Dir>/.metadata/.plugins/org.eclipse.wst.server.core/tmp0/Project_WebApp/WEB-INF/lib. In both cases, the dependencies are available at <Resource_Base_Path>/WEB-INF/lib and Resource_Base_Path has no relation to Project_WebApp base directory.
Questions:
Did any one use SpringExtension in a scenario similar to above? If so can you suggest any alternative approaches?
Instead of /WEB-INF/lib/company-common*.jar, we tried a classpath-based pattern but didn't work as the obtained class path resources don't match the pattern. Is there anything else to try here?

Pass the bean to a jar in lib folder

We got Java EE 7 project with the following structure:
app.ear
META-INF
application.xml
lib
framework.jar
webapp.war
core.jar
Framework.jar is our framework that uses some kind of command pattern.
This is how it works. Each command has it's own ejb attached to it that does all the business logic. This command ejb extends CommandEJB class that have an execute method.
For example, this is an example of a command ejb:
public class cmdCreateBookEJB<T extends cmdCreateBook> extends CommandEJB<T> {
#Override
public void execute() {
//do something
}
}
And in our framework, we also have CommandExecutorEJB that sets the appropriate ejb for the command and execute it.
Example:
CmdCreateBook cmdCreateBook = new cmdCreateBook();
cmdCreateBook.setEjb(cmdCreateBookEJB.class.getSimpleName());
commandExecutorEJB.execute(cmdCreateBook);
The problem is our framework, specifically CommandExecutorEJB(that is packed in framework.jar inside lib folder) needs to know about ejb's from core.jar, so it can handle the command. What actually happens in the framework is that the the specific command ejb(cmdCreateBookEJB) in my example is cast to CommandEJB and then it's execute method is called.
The question is how to make the framework know about command ejbs.
I know that one option is to specify am env-entry in ejb-jar.xml with the core jar module name, and then use #Resource in commandExecutorEJB to find the entry, and then use the JNDI lookup to find the resource that would be cast to CommandBean.
But, I would like not to use ejb-jar.xml as we're using ejb 3.2 and ejb-jar.xml isn't necessary anymore.
EDIT:
To better explain here is how the jndi lookup string would look like for my example: java:app/core.jar/cmdCreateBookEJB
Because framework isn't and shouldn't be aware of the core.jar(The name core.jar name is just an example, someone could name it BookStoreCore.jar), I somehow need to pass module name(in my example core.jar), so that the framework know where to look for classes to find a specific command EJB, in my example cmdCreateBookEJB.
I know that I can use an env-var in ejb-jar.xml to pass module name to the framework. Here's an example:
<session>
<ejb-name>CommandExecutorEJB</ejb-name>
<ejb-class>com.mypackage.CommandExecutorEJB</ejb-class>
<session-type>Stateless</session-type>
<env-entry>
<env-entry-name>com.mypackage.CommandExecutorEJB/moduleName</env-entry-name>
<env-entry-type>java.lang.String</env-entry-type>
<env-entry-value>core</env-entry-value>
</env-entry>
</session>
But, I would love to eliminate ejb-jar.xml from our project setup

You're using Java EE 7.
You can completely avoid class visibility problems by putting everything in your WAR file. core.jar and framework.jar can both be added to your WEB-INF/lib directory.
You can then directly inject EJBs where ever they're needed.

Using Coda Hale Yammer Metrics library in Websphere Application Server 7

I am trying to add metrics library to existing webservice on WAS 7. I am getting below error
Error 404: javax.servlet.UnavailableException: SRVE0203E: Servlet [AdminServlet]: com.yammer.metrics.reporting.AdminServlet was found, but is missing another required class. SRVE0206E: This error typically implies that the servlet was originally compiled with classes which cannot be located by the server. SRVE0187E: Check your class path to ensure that all classes required by the servlet are present.SRVE0210I: This problem can be debugged by recompiling the servlet using only the classes in the application's runtime class path SRVE0234I
What are the other run-time dependencies required for metrics-servlet-2.2.0?
I have metrics-core-2.2.0.jar and metrics-servlet-2.2.0.jar in my WEB-INF\lib folder.
Threads, ping and healthcheck servlets work fine.

I think your missing some more required jars, are you not using maven or gradle for dependency management
Please refer here to know all required jars that metrics-servlet-2.2.0.jar depends on. http://mvnrepository.com/artifact/com.yammer.metrics/metrics-servlets/3.0.0-BETA1
My suggestion is, it is always difficult to maintain dependencies without Maven/Gradle or any other build tools :).

Classloader problem with EJB

I'm working on a project which includes persistence library (JPA 1.2), EJB 3 and Web presentation layer (JSF). I develop application using Eclipse and application is published on Websphere Application Server Community Edition (Geronimo 2.1.4) through eclipse plugin (but the same thing happens if I publish manually). When publishing to server I get the following error:
java.lang.NoClassDefFoundError: Could not fully load class: manager.administration.vehicles.VehicleTypeAdminBean
due to:manager/vehicles/VehicleType
in classLoader:
org.apache.geronimo.kernel.classloader.TemporaryClassLoader#18878c7
at org.apache.xbean.finder.ClassFinder.(ClassFinder.java:177)
at org.apache.xbean.finder.ClassFinder.(ClassFinder.java:146)...
In web.xml I have reference to EJB:
<ejb-local-ref>
<ejb-ref-name>ejb/VehicleTypeAdmin</ejb-ref-name>
<ejb-ref-type>Session</ejb-ref-type>
<local>manager.administration.vehicles.VehicleTypeAdmin</local>
<ejb-link>VehicleTypeAdminBean</ejb-link>
</ejb-local-ref>
EJB project has a reference to persistence project, and Web project has references to both projects. I don't get any compilation errors, so I suppose classes and references are correct.
I don't know if it is app server problem, but I ran previously application on the same server using same configuration parameters.
Does anybody have a clue what might be the problem?

Looks almost like it couldn't find the class manager.vehicles.VehicleType when it was attempting to create/load the class manager.administration.vehicles.VehicleTypeAdminBean.
I've encountered similar problems before. When the class loader attempts to load the class it looks at the import statements (and other class usage declarations) and then attempts to load those classes and so on until it reaches the bottom of the chain (ie java.lang.Object). If it cannot find one class along the chain (in your case it looks like it cannot load VehicleType) then it will state that it cannot load the class at the top of the chain (in your case VehicleTypeAdminBean).
Is the VehicleType class in a different jar? If you have a web module and and EJB module do you have the jar containing the VehicleType class in the appropriate place(s). Sometimes with web projects you have to put the jars in the WebContent/WEB-INF/lib folder or it won't find them.
Are both of these projects deployed separately (ie. two ears? or one ear and one war?) or are they together (ie, one ear with jars and a war inside?). I'm assuming the second given you declared your EJB local?
The jars that you are dependent on also have to be declared in your MANIFEST.MF files in the projects that use it.
I'm kind of running on guesses since I do not know your project structure. Showing that would help quite a bit. But I'd still check on where VehicleType is located with regards to your EJB class. You might find it isn't where you think it is come packaging or runtime.

Thanks #Chris for WebContent/WEB-INF/lib idea ! it works for me by following these steps :
1- Export my EJBs to a JAR (MyEJBs.jar)
2- I created another jar with your_installation_path/IBM/SDP/runtimes/your_version/binCreateEJBStrub.bat via CMD.exe, by executing this command :
createEJBStubs.bat <my_path>/MyEJBs.jar -newfile –quiet
3- A new jar will be automatically created in the same directory as MyEJBs.jar named MyEJBs_withStubs.jar
4- Put your new jar in WebContent/WEB-INF/lib
5- Call your EJBs by :
MyEJBRemote eJBRemote;
InitialContext ic = new InitialContext();
obj = ic.lookup("your_ejb_name_jndi");
eJBRemote = (MyEJBRemote ) PortableRemoteObject.narrow(obj,
MyEJBRemote.class);
eJBRemote = (MyEJBRemote ) obj;
Now you can call your EJBs from another EAR

web client for web service

I've a web-service that works fine when I access them from a J2SE (desktop) application. To access this service I do follow:
generate stub classes by wsdl link using java wsimport tool
then I create service using generated classes and run one of wsdl operations.It looks like this:
MyWebServiceService webService = new MyWebServiceService();
MyWebService port = webService.getMyWebServicePort();
webService.run("XYZ");
As I sad it work fine when I use it in a standalone application.
But...when I try to access web-service in the same way but from servlet-client, using generated stubs I get following error:
java.lang.ClassCastException: com.sun.xml.bind.v2.runtime.JAXBContextImpl cannot be cast to com.sun.xml.bind.api.JAXBRIContext
org.jboss.ws.metadata.umdm.EndpointMetaData.eagerInitializeAccessors(EndpointMetaData.java:686)
org.jboss.ws.metadata.umdm.EndpointMetaData.initializeInternal(EndpointMetaData.java:567)
org.jboss.ws.metadata.umdm.EndpointMetaData.eagerInitialize(EndpointMetaData.java:553)
org.jboss.ws.metadata.builder.jaxws.JAXWSClientMetaDataBuilder.rebuildEndpointMetaData(JAXWSClientMetaDataBuilder.java:314)
org.jboss.ws.core.jaxws.spi.ServiceDelegateImpl.getPortInternal(ServiceDelegateImpl.java:271)
org.jboss.ws.core.jaxws.spi.ServiceDelegateImpl.getPort(ServiceDelegateImpl.java:202)
javax.xml.ws.Service.getPort(Service.java:143...
I've searched google long time but found nothing helpful topics. Some topics show examples accessing web-services from servlet, but unfortunately I can't do this...( And don't know what is cause of trouble.
Application server: jboss 4.2.3GA
Is it possible to connect web-service from servlet? How?
I've tried use #WebServiceRef annotation, but it seem web-container can't inject web-service stub. And I think that container must not do this itself, because stub classes have already been generated by wsimport tool, and its enouph to use this classes for accessing of web-service.
Stub classes were generated using the following command:
wsimport -keep -p com.myhost.ws http://www.myhost.com/services/MyWebService?wsdl

Did you make sure your classpath does not contain multiple JAX-B Jars with differing versions ? The exception looks like a version conflict to me. Application servers usually have some kind of "endorsed" lib directory that holds JARS that are always added in front of web application classpaths. Maybe your app server has a conflicting JAX-B implementation there ?
If you use Maven to package your application, make sure transitive dependencies don't pull in unwanted JAX-B Jars (use 'mvn dependency:tree' to check this).

This definitely sounds like a JAXB conflict to me. Check out the jaxb versions that you have in your war and make sure that they are not conflicting with a jaxb jar that Jboss may have in its lib directory.

Addytionally if jbossws-native library was installed correctly the following packages should be deleted from jboss_home/lib/endorsed directory:
jboss-jaxrpc.jar
jboss-jaxws-ext.jar
jboss-jaxws.jar
jboss-saaj.jar
Otherwise you don't have ability to connect to web service through EJB or servlet.