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Java Process object fails to execute given command

I am trying to run a piece of Python code via a Java application. The command when put directly into Command Prompt cd'd to the working directory runs exactly as intended. However, my attempts to use the Runtime and ProcessBuilder classes in conjunction with the Process class has yielded no sign of correct function which would be the creation of a CSV file for every call of the code.
I am running this program using Intellij on Windows 10. I have added each directory I am using to my environmental PATH variable as well as attempting full paths in my commands and just file names. The only source of life I can find is that if I include a .waitFor() method a .isAlive() method will return true before the .waitFor() method is called.
I have searched through various similar questions and concluded that using a ProcessBuilder object is the best way to go and that the biggest issue is probably the structure of my command. However, I have made many iterations and have found nothing that changes the caught error to anything useful.
Here is the privacy augmented code that I have been running, I wrote out the command in full in the process builder as that is the last iteration I have attempted.
for (int y = 1; y < iterator; y++) {
try {
String command =
"C:\\Users\\myName\\AppData\\Local\\Programs\\Python\\Python37\\python C:\\Users\\myName\\IdeaProjects\\projectApplication\\script.py ";
String pythonInputPath = " C:\\Users\\myName\\IdeaProjects\\projectApplication\\bin\\output" + y + ".wav ";
ProcessBuilder pb = new ProcessBuilder(command+Arrays.toString(pythonCommandString).replaceAll("\\s","")+pythonInputPath+Integer.toString(y));
Process p = pb.start();
//Process checks
System.out.println(p.isAlive());
p.waitFor();
System.out.println(p.isAlive());
//Destroying process once complete to ensure smooth iterations
p.destroy();
} catch (Exception ex) {
System.out.println("Problems with python script execution: " + ex);
}
}
They python code takes in a WAV file (pythonInputPath) that is a product of earlier part of the application, an Integer[] that usually includes ~20 values (pythonCommandString), and a single iteration integer (y).
The first call to .isAlive() is true and the second is false as expected however the script normally creates a CSV that should be output to a bin file that exists in the working director and that fails to occur when running from Java. From other examples I expected using the Process builder as opposed to the Runtime stream to work, however, there is no difference in my implementation.

Do not concatenate the program with its arguments. Quoting Oracle ProcessBuilder docs
Each process builder manages these process attributes: a command, a
list of strings which signifies the external program file to be
invoked and its arguments, if any
and
ProcessBuilder pb = new ProcessBuilder("myCommand", "myArg1", "myArg2");
Just use the constructor you use, but pass each argument as a separate string, otherwise the OS will try to find an application that is named as a whole command line you gave, and obviously there is no such program

Calling ps on Linux from Java

In Java, I start one new Process using Runtime.exec(), and this process in turn spawns several child processes.
I want to be able to kill all the processes, and have previously been trying process.destroy() and process.destroyForcibly() - but the docs say that destroyForcibly() just calls destroy() in the default implementation and destroy() may not kill all subprocesses (I've tried and it clearly doesn't kill the child processes).
I'm now trying a different approach, looking up the PID of the parent process using the method suggested here and then calling ps repeatedly to traverse the PIDs of child processes, then killing them all using kill. (It only needs to run on Linux).
I've managed the first bit - looking up the PID, and am trying the following command to call ps to get the child PIDs:
String command = "/bin/ps --ppid " + pid;
Process process = new ProcessBuilder(command).start();
process.waitFor();
Unfortunately the 2nd line above is throwing an IOException, with the following message: java.io.IOException: Cannot run program "/bin/ps --ppid 21886": error=2, No such file or directory
The command runs fine if I paste it straight into the terminal on Ubuntu 16.04.
Any ideas would be very much appreciated.
Thanks

Calling the command you wish to run this way is always destined to fail.
Since Process does not effectively run a shell session, the command is basically handed over to the underlying OS to run. This means that it'll fail, since the path to t he program to be executed (in this case ps), is not the full one hence the error you're getting.
Also, testing whether your command works using a terminal is not correct. Using a terminal contains the notion of performing an action with an active logged in user with a correct path etc etc. All the above are not the case though when running a command through Process as these are not taken into consideration.
Furthermore, you also need to account for cases where the actual java application could be running under a different user, with a different set of permissions, paths etc.
In order for your to fix this, you can simply do either of the following:
1) Invoke your ps command using the full path to it (still not sure if it would work)
2) Change the way your create the Process object into something like: p = new ProcessBuilder("bash", "-c", command).start();
The second, will effectively run a bash session, passing in the ps command as an argument thus obtaining the desired result.

http://commons.apache.org/proper/commons-exec/tutorial.html
```
String line = "AcroRd32.exe /p /h " + file.getAbsolutePath();
CommandLine cmdLine = CommandLine.parse(line);
DefaultExecutor executor = new DefaultExecutor();
int exitValue = executor.execute(cmdLine);
```

Run external app by userinput

So I'm creating a Java program and I want to make it so that you can ask it to open a program.
But, here's the catch, I want the program it opens to be taken from the user input, right now I'm trying to change this
try{Process p = Runtime.getRuntime().exec("notepad.exe");}
catch(Exception e1){}
Into something that opens a program that you asked it to open.
Here's an example of what I want:
User: Can you open chrome?
Program: Of course, here you go!
chrome opens
Could anyone tell me how I would be able to do this?

You can do it in two ways:
1.By Using Runtime:
Runtime.getRuntime().exec(...)
So, for example, on Windows,
Runtime.getRuntime().exec("C:\application.exe -arg1 -arg2");
2.By Using ProcessBuilder:
ProcessBuilder b = new ProcessBuilder("C:\application.exe", "-arg1", "-arg2");
or alternatively
List<String> params = java.util.Arrays.asList("C:\application.exe", "-arg1", "-arg2");
ProcessBuilder b = new ProcessBuilder(params);
or
ProcessBuilder b = new ProcessBuilder("C:\application.exe -arg1 -arg2");
The difference between the two is :
Runtime.getRuntime().exec(...)
takes a single string and passes it directly to a shell or cmd.exe process. The ProcessBuilder constructors, on the other hand, take a varargs array of strings or a List of strings, where each string in the array or list is assumed to be an individual argument.
So,Runtime.getRuntime.exec() will pass the line C:\application.exe -arg1 -arg2 to cmd.exe, which runs a application.exe program with the two given arguments. However, ProcessBuilder method will fail, unless there happens to be a program whose name is application.exe -arg1 -arg2 in C:.

You can try it with like. Pass whole path of where you install chrome.
try{
Process p = Runtime.getRuntime().exec("C:\\Program Files\\Google\\Chrome\\Application\\chrome.exe");
}
catch(Exception e1){
}

When using exec, it is essentially the same as if you were using the command line on windows. Open Command Prompt, type open, and see if it gives details as to how it opens files. If not, find the opener. Usually when dealing with command line operations, there are multiple parameters that are required for opening files/applications. An example of this would be for opening the "TextEdit.app" application on a mac.
Process p = Runtime.getRuntime().exec("open -a TextEdit.app");
Terminal(for mac) would open the app using the -a flag, meaning "application." You could open a file doing:
Process p = Runtime.getRuntime().exec("open filename.file_ext -a TextEdit.app");
The second one will tell the computer to find the application named <app_name>.app and open the file filename.file_ext
I know this is not going to work for a windows machine, but it's only to show how to use the command line operations for opening files and applications. It should be similar for windows though.
Hope this helps

Runtime.getRuntime().exec strange behavior

I am trying to call a perl script from java runtime. It worked fine on my windows7 laptop with the following code,
try {
String cmdString= "c:\\perl64\\bin\\perl.exe c:\\perl64\\eg\\userinput.pl \""+arg1+"\" \""+arg2+"\"";
Process p = Runtime.getRuntime().exec(cmdString);
} catch(IOException e) {
System.out.println(e);
}
The perl script runs and produces what I expect (update database).
When I move the whole thing over to a remote CentOS server, it doesn't work anymore. The script is the same and the java code is,
try {
String cmdString= "/opt/lampp/bin/perl /home/support/scripts/userinput.pl \""+arg1+"\" \""+arg2+"\" > /tmp/userinput.log";
log(cmdString);
Process p = Runtime.getRuntime().exec(cmdString);
} catch(IOException e) {
System.out.println(e);
}
I added redirect to /tmp/userinput.log after I see the script is not working. But there is no log file created at all. I also added log to make sure this part of the java code did get executed, and indeed it did. I also tried to add "/bin/bash " in front of the comString and it didn't make a difference. However, when I run the cmdString directly on the remote server from command line, it works without problem.
Now, when I changed the cmdString to "touch /tmp/userinput.log", it does create the empty log file.
So I know the Runtime.getRuntime().exec(cmdString) command ran, and the cmdString works when entered on command line, and a simple "touch" command would work with this setup. But I am totally lost why the actual cmdString that calls the perl script doesn't work, and there is no message whatsoever to tell me what is wrong.
Can someone please help?

Frist, separate each parameter for the command and use the version of exec which takes a String[] (you won't have to worry about quoting issues). also, shell redirection won't work since java isn't executing a shell.

how to run cygwin script from java

I'm trying to run a bash script from a Java program I'm writing in windows. I've been trying to use the Runtime object to get a process to work, and my program compiles and runs without exceptions, but my simple test script, which just makes a directory, is not being executed.
Here's what I've got so far:
String cmmd[] = new String[3];
cmmd[0] = "C:\\cygwin\\bin\\bash.exe";
cmmd[1] = "cd C:/Users/pro-services/Desktop/projects/github/cygwin";
cmmd[2] = "bash TEST.sh";
Runtime rt= Runtime.getRuntime();
Process proc = rt.exec(cmmd);
This is basically a mix of different things I've found in forums around the net, but I guess I just don't really understand what is happening with the Process class (and I only have a basic idea about the Runtime class).
I also found this, and plugged my own stuff in where I thought it should go:
Runtime.getRuntime().exec(new String[]{"C:\\cygwin\\bin\\bash.exe",
"-c", "c:\\cygwin\\bin\\run.exe -p /bin bash C:\\Users\\pro-services\\Desktop\\projects\\github\\cygwin\\TEST.sh"},
new String[]{"PATH=/cygdrive/c/cygwin/bin"});
Here I'm not sure what the "-c" and "-p" strings represent, but I just went with it. At first it looked like I could just plug in the sequential commands that I want the Runtime/Process object to execute, in essence creating a "script" to run my script. But it now seems that there's more to it...
I'm just shooting in the dark at this point, and I have tried to understand the documentation but I'm lost. Any help would be appreciated. Thanks )))

Untested, but I would think:
cmmd[0] = "C:/cygwin/bin/bash.exe";
cmmd[1] = "-c";
cmmd[2] = "cd /cygdrive/c/Users/pro-services/Desktop/projects/github/cygwin && bash TEST.sh";