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JDBC connection pool occasionally becomes unavailable (not registered) through JNDI

I'm seeing some problems with making queries to a database unpredictably.
This is an application hosted on Payara 4, connecting to an Oracle database using EclipseLink. We've seen it occur in our production environment, on two instances. It appears that it occurs at higher times of usage, though I'm not sure if that's because it's the cause or because there's more requests so it's more likely to happen.
Below is a graph that shows the number of failed requests (in red) and successful requests (in grey):
I've confirmed that there are no issues on the database side, e.g. dropped connections.
The following is the error that occurs on the failure (although it happens on many queries):
javax.persistence.PersistenceException: Exception [EclipseLink-4002] (Eclipse Persistence Services - 2.6.4.qualifier): org.eclipse.persistence.exceptions.DatabaseException
Internal Exception: java.sql.SQLException: This pool is not registered with the runtime environment : <redacted>
Error Code: 0
Call: <redacted>
bind => [1 parameter bound]
Query: DoesExistQuery(<redacted>)
at org.eclipse.persistence.internal.jpa.EntityManagerImpl.flush(EntityManagerImpl.java:879)
at org.eclipse.persistence.internal.jpa.QueryImpl.performPreQueryFlush(QueryImpl.java:967)
at org.eclipse.persistence.internal.jpa.QueryImpl.executeReadQuery(QueryImpl.java:207)
at org.eclipse.persistence.internal.jpa.QueryImpl.getResultList(QueryImpl.java:473)
at <redacted>
at <redacted>
at <redacted>
at sun.reflect.GeneratedMethodAccessor6005.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:1081)
at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:1153)
at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4836)
at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:656)
at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:836)
at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
at org.jboss.weld.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:64)
at org.jboss.weld.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52)
at sun.reflect.GeneratedMethodAccessor3907.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:895)
at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:835)
at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163)
at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140)
at sun.reflect.GeneratedMethodAccessor3908.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:895)
at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:835)
at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:374)
at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4808)
at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4796)
at com.sun.ejb.containers.EJBObjectInvocationHandler.invoke(EJBObjectInvocationHandler.java:205)
at com.sun.ejb.containers.EJBObjectInvocationHandlerDelegate.invoke(EJBObjectInvocationHandlerDelegate.java:79)
at com.sun.proxy.$Proxy132454.<redacted>(Unknown Source)
at sun.reflect.GeneratedMethodAccessor6004.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at com.sun.corba.ee.impl.presentation.rmi.StubInvocationHandlerImpl.privateInvoke(StubInvocationHandlerImpl.java:239)
at com.sun.corba.ee.impl.presentation.rmi.StubInvocationHandlerImpl.invoke(StubInvocationHandlerImpl.java:150)
at com.sun.corba.ee.impl.presentation.rmi.codegen.CodegenStubBase.invoke(CodegenStubBase.java:226)
at <redacted>
at <redacted>
at <redacted>
at <redacted>
at org.apache.struts.chain.commands.servlet.ExecuteAction.execute(ExecuteAction.java:58)
at org.apache.struts.chain.commands.AbstractExecuteAction.execute(AbstractExecuteAction.java:67)
at org.apache.struts.chain.commands.ActionCommandBase.execute(ActionCommandBase.java:51)
at org.apache.commons.chain.impl.ChainBase.execute(ChainBase.java:191)
at org.apache.commons.chain.generic.LookupCommand.execute(LookupCommand.java:305)
at org.apache.commons.chain.impl.ChainBase.execute(ChainBase.java:191)
at org.apache.struts.chain.ComposableRequestProcessor.process(ComposableRequestProcessor.java:283)
at org.apache.struts.action.ActionServlet.process(ActionServlet.java:1913)
at org.apache.struts.action.ActionServlet.doPost(ActionServlet.java:462)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:707)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:790)
at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1692)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:339)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:209)
at <redacted>
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:251)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:209)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:256)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:160)
at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:654)
at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:593)
at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:159)
at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:654)
at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:593)
at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:368)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:238)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:483)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:180)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:206)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:180)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:235)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:539)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:593)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:573)
at java.lang.Thread.run(Thread.java:748)
Caused by: Exception [EclipseLink-4002] (Eclipse Persistence Services - 2.6.4.qualifier): org.eclipse.persistence.exceptions.DatabaseException
Internal Exception: java.sql.SQLException: This pool is not registered with the runtime environment : <redacted>
Error Code: 0
Call: <redacted>
bind => [1 parameter bound]
Query: DoesExistQuery(<redacted>)
at org.eclipse.persistence.exceptions.DatabaseException.sqlException(DatabaseException.java:316)
at org.eclipse.persistence.sessions.JNDIConnector.connect(JNDIConnector.java:147)
at org.eclipse.persistence.sessions.DatasourceLogin.connectToDatasource(DatasourceLogin.java:162)
at org.eclipse.persistence.internal.databaseaccess.DatasourceAccessor.connectInternal(DatasourceAccessor.java:346)
at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.connectInternal(DatabaseAccessor.java:309)
at org.eclipse.persistence.internal.databaseaccess.DatasourceAccessor.reconnect(DatasourceAccessor.java:581)
at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.reconnect(DatabaseAccessor.java:1634)
at org.eclipse.persistence.internal.databaseaccess.DatasourceAccessor.incrementCallCount(DatasourceAccessor.java:321)
at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.basicExecuteCall(DatabaseAccessor.java:615)
at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.executeCall(DatabaseAccessor.java:560)
at org.eclipse.persistence.internal.sessions.AbstractSession.basicExecuteCall(AbstractSession.java:2056)
at org.eclipse.persistence.sessions.server.ServerSession.executeCall(ServerSession.java:570)
at org.eclipse.persistence.sessions.server.ClientSession.executeCall(ClientSession.java:258)
at org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.executeCall(DatasourceCallQueryMechanism.java:242)
at org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.executeCall(DatasourceCallQueryMechanism.java:228)
at org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.selectRowForDoesExist(DatasourceCallQueryMechanism.java:736)
at org.eclipse.persistence.queries.DoesExistQuery.executeDatabaseQuery(DoesExistQuery.java:241)
at org.eclipse.persistence.queries.DatabaseQuery.execute(DatabaseQuery.java:904)
at org.eclipse.persistence.queries.DatabaseQuery.executeInUnitOfWork(DatabaseQuery.java:803)
at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.internalExecuteQuery(UnitOfWorkImpl.java:2896)
at org.eclipse.persistence.internal.sessions.AbstractSession.executeQuery(AbstractSession.java:1857)
at org.eclipse.persistence.internal.sessions.AbstractSession.executeQuery(AbstractSession.java:1839)
at org.eclipse.persistence.internal.sessions.AbstractSession.executeQuery(AbstractSession.java:1790)
at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.checkForUnregisteredExistingObject(UnitOfWorkImpl.java:785)
at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.discoverAndPersistUnregisteredNewObjects(UnitOfWorkImpl.java:4192)
at org.eclipse.persistence.mappings.ObjectReferenceMapping.cascadeDiscoverAndPersistUnregisteredNewObjects(ObjectReferenceMapping.java:951)
at org.eclipse.persistence.mappings.ObjectReferenceMapping.cascadeDiscoverAndPersistUnregisteredNewObjects(ObjectReferenceMapping.java:929)
at org.eclipse.persistence.internal.descriptors.ObjectBuilder.cascadeDiscoverAndPersistUnregisteredNewObjects(ObjectBuilder.java:2515)
at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.discoverAndPersistUnregisteredNewObjects(UnitOfWorkImpl.java:4205)
at org.eclipse.persistence.mappings.CollectionMapping.cascadeDiscoverAndPersistUnregisteredNewObjects(CollectionMapping.java:483)
at org.eclipse.persistence.internal.descriptors.ObjectBuilder.cascadeDiscoverAndPersistUnregisteredNewObjects(ObjectBuilder.java:2515)
at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.discoverAndPersistUnregisteredNewObjects(UnitOfWorkImpl.java:4205)
at org.eclipse.persistence.mappings.CollectionMapping.cascadeDiscoverAndPersistUnregisteredNewObjects(CollectionMapping.java:483)
at org.eclipse.persistence.internal.descriptors.ObjectBuilder.cascadeDiscoverAndPersistUnregisteredNewObjects(ObjectBuilder.java:2515)
at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.discoverAndPersistUnregisteredNewObjects(UnitOfWorkImpl.java:4205)
at org.eclipse.persistence.mappings.CollectionMapping.cascadeDiscoverAndPersistUnregisteredNewObjects(CollectionMapping.java:483)
at org.eclipse.persistence.internal.descriptors.ObjectBuilder.cascadeDiscoverAndPersistUnregisteredNewObjects(ObjectBuilder.java:2515)
at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.discoverAndPersistUnregisteredNewObjects(UnitOfWorkImpl.java:4205)
at org.eclipse.persistence.mappings.ObjectReferenceMapping.cascadeDiscoverAndPersistUnregisteredNewObjects(ObjectReferenceMapping.java:951)
at org.eclipse.persistence.mappings.ObjectReferenceMapping.cascadeDiscoverAndPersistUnregisteredNewObjects(ObjectReferenceMapping.java:929)
at org.eclipse.persistence.internal.descriptors.ObjectBuilder.cascadeDiscoverAndPersistUnregisteredNewObjects(ObjectBuilder.java:2515)
at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.discoverAndPersistUnregisteredNewObjects(UnitOfWorkImpl.java:4205)
at org.eclipse.persistence.internal.sessions.RepeatableWriteUnitOfWork.discoverUnregisteredNewObjects(RepeatableWriteUnitOfWork.java:308)
at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.calculateChanges(UnitOfWorkImpl.java:723)
at org.eclipse.persistence.internal.sessions.RepeatableWriteUnitOfWork.writeChanges(RepeatableWriteUnitOfWork.java:441)
at org.eclipse.persistence.internal.jpa.EntityManagerImpl.flush(EntityManagerImpl.java:874)
... 92 more
Caused by: java.sql.SQLException: This pool is not registered with the runtime environment : <redacted>
at com.sun.enterprise.connectors.service.ConnectorConnectionPoolAdminServiceImpl.getConnection(ConnectorConnectionPoolAdminServiceImpl.java:1558)
at com.sun.enterprise.connectors.ConnectorRuntime.getConnection(ConnectorRuntime.java:639)
at org.glassfish.jdbcruntime.service.JdbcDataSource.getConnection(JdbcDataSource.java:88)
at org.eclipse.persistence.sessions.JNDIConnector.connect(JNDIConnector.java:135)
... 136 more
Caused by: javax.resource.ResourceException: This pool is not registered with the runtime environment : <redacted>
at com.sun.enterprise.connectors.service.ConnectorConnectionPoolAdminServiceImpl.getUnpooledConnection(ConnectorConnectionPoolAdminServiceImpl.java:583)
at com.sun.enterprise.connectors.service.ConnectorConnectionPoolAdminServiceImpl.getConnection(ConnectorConnectionPoolAdminServiceImpl.java:1550)
... 139 more
Caused by: com.sun.appserv.connectors.internal.api.ConnectorRuntimeException: This pool is not bound in JNDI : <redacted>
at com.sun.enterprise.connectors.service.ConnectorConnectionPoolAdminServiceImpl.obtainManagedConnectionFactory(ConnectorConnectionPoolAdminServiceImpl.java:1022)
at com.sun.enterprise.connectors.service.ConnectorConnectionPoolAdminServiceImpl.obtainManagedConnectionFactory(ConnectorConnectionPoolAdminServiceImpl.java:911)
at com.sun.enterprise.connectors.service.ConnectorConnectionPoolAdminServiceImpl.getUnpooledConnection(ConnectorConnectionPoolAdminServiceImpl.java:576)
... 140 more
Caused by: javax.naming.NamingException: Lookup failed for '__SYSTEM/pools/<redacted>' in SerialContext[myEnv={java.naming.factory.initial=com.sun.enterprise.naming.impl.SerialInitContextFactory, java.naming.factory.state=com.sun.corba.ee.impl.presentation.rmi.JNDIStateFactoryImpl, java.naming.factory.url.pkgs=com.sun.enterprise.naming} [Root exception is javax.naming.NameNotFoundException: <redacted> not found]
at com.sun.enterprise.naming.impl.SerialContext.lookup(SerialContext.java:496)
at com.sun.enterprise.naming.impl.SerialContext.lookup(SerialContext.java:442)
at javax.naming.InitialContext.lookup(InitialContext.java:417)
at javax.naming.InitialContext.lookup(InitialContext.java:417)
at org.glassfish.resourcebase.resources.naming.ResourceNamingService.lookup(ResourceNamingService.java:238)
at com.sun.enterprise.connectors.service.ConnectorConnectionPoolAdminServiceImpl.getConnectorConnectionPool(ConnectorConnectionPoolAdminServiceImpl.java:799)
at com.sun.enterprise.connectors.service.ConnectorConnectionPoolAdminServiceImpl.obtainManagedConnectionFactory(ConnectorConnectionPoolAdminServiceImpl.java:938)
... 142 more
Caused by: javax.naming.NameNotFoundException: <redacted> not found
at com.sun.enterprise.naming.impl.TransientContext.doLookup(TransientContext.java:237)
at com.sun.enterprise.naming.impl.TransientContext.lookup(TransientContext.java:204)
at com.sun.enterprise.naming.impl.TransientContext.lookup(TransientContext.java:208)
at com.sun.enterprise.naming.impl.TransientContext.lookup(TransientContext.java:208)
at com.sun.enterprise.naming.impl.SerialContextProviderImpl.lookup(SerialContextProviderImpl.java:70)
at com.sun.enterprise.naming.impl.LocalSerialContextProviderImpl.lookup(LocalSerialContextProviderImpl.java:114)
at com.sun.enterprise.naming.impl.SerialContext.lookup(SerialContext.java:483)
... 148 more
Additionally, in the server.log, I've there's the following RAR messages. These only seem to occur when the usage exceeds a certain amount:
RAR6021: Failed to remove the MCF : <connection_pool>
RAR5114: Error allocating connection : [Task already scheduled or cancelled]
RAR5114 : Error allocating connection : [null]
RAR5114 : Error allocating connection : [This pool is not registered with the runtime environment : <connection_pool>]
RAR5114 : Error allocating connection : [This pool is not bound in JNDI : <connection_pool><connection_pool>]
RAR7010: Pool not reachable.
There is also one instance of RAR6021 :Failed to create MCF : <connection_pool> in a single day; however, I'm unsure whether this is related.
What could be causing this? Are there any techniques that could be use to diagnose the issue?

Apparently in our server Payara 4.1.2.173 build 24 the solution was remove the JDBC Connection Pool and recreating it.

I had the same problem but in my case I use Glassfish 4 and after making many changes in the settings, increasing memory, cores, etc. I read the Ignaco Novello's comment advising to remove and recreate the jdbc connection pool and to my surprise it worked perfectly. (y)

Can't find resource for bundle during Glassfish deployment

During remote deployment of an EAR application on Glassfish 4.1.2 with no AppClient, I get the following RuntimeException caused by a org.glassfish.deployment.common.DeploymentException:
java.lang.RuntimeException: Can't find resource for bundle
java.util.PropertyResourceBundle, key
enterprise.deployment.appclient.noManifest
How do I fix Glassfish to display the correct error message so I can determine which library is causing the deployment error? I take it one of the dependency JARs is missing a manifest file, but GF can't construct the appropriate error message because the property resource bundle does not exist. Is this a bug in GF?
[2017-07-11T09:57:27.797+1000] [glassfish 4.1] [SEVERE] []
[javax.enterprise.system.core] [tid: _ThreadID=47
_ThreadName=admin-listener(4)] [timeMillis: 1499731047797] [levelValue: 1000] [[ Exception while preparing the app : Can't find
resource for bundle java.util.PropertyResourceBundle, key
enterprise.deployment.appclient.noManifest java.lang.RuntimeException:
Can't find resource for bundle java.util.PropertyResourceBundle, key
enterprise.deployment.appclient.noManifest at
org.glassfish.javaee.core.deployment.JavaEEDeployer.prepare(JavaEEDeployer.java:229)
at
com.sun.enterprise.v3.server.ApplicationLifecycle.prepareModule(ApplicationLifecycle.java:925)
at
org.glassfish.javaee.full.deployment.EarDeployer.prepareBundle(EarDeployer.java:309)
at
org.glassfish.javaee.full.deployment.EarDeployer.access$200(EarDeployer.java:88)
at
org.glassfish.javaee.full.deployment.EarDeployer$1.doBundle(EarDeployer.java:155)
at
org.glassfish.javaee.full.deployment.EarDeployer$1.doBundle(EarDeployer.java:152)
at
org.glassfish.javaee.full.deployment.EarDeployer.doOnBundles(EarDeployer.java:232)
at
org.glassfish.javaee.full.deployment.EarDeployer.doOnAllBundles(EarDeployer.java:283)
at
org.glassfish.javaee.full.deployment.EarDeployer.prepare(EarDeployer.java:152)
at
com.sun.enterprise.v3.server.ApplicationLifecycle.prepareModule(ApplicationLifecycle.java:925)
at
com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:434)
at
com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:219)
at
org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:491)
at
com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:539)
at
com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:535)
at java.security.AccessController.doPrivileged(Native Method) at
javax.security.auth.Subject.doAs(Subject.java:360) at
com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:534)
at
com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:565)
at
com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:557)
at java.security.AccessController.doPrivileged(Native Method) at
javax.security.auth.Subject.doAs(Subject.java:360) at
com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:556)
at
com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1464)
at
com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1300(CommandRunnerImpl.java:109)
at
com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1846)
at
com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1722)
at
org.glassfish.admin.rest.resources.admin.CommandResource.executeCommand(CommandResource.java:404)
at
org.glassfish.admin.rest.resources.admin.CommandResource.execCommandSimpInMultOut(CommandResource.java:234)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498) at
org.glassfish.jersey.server.model.internal.ResourceMethodInvocationHandlerFactory$1.invoke(ResourceMethodInvocationHandlerFactory.java:81)
at
org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher$1.run(AbstractJavaResourceMethodDispatcher.java:144)
at
org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.invoke(AbstractJavaResourceMethodDispatcher.java:161)
at
org.glassfish.jersey.server.model.internal.JavaResourceMethodDispatcherProvider$ResponseOutInvoker.doDispatch(JavaResourceMethodDispatcherProvider.java:160)
at
org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.dispatch(AbstractJavaResourceMethodDispatcher.java:99)
at
org.glassfish.jersey.server.model.ResourceMethodInvoker.invoke(ResourceMethodInvoker.java:389)
at
org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:347)
at
org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:102)
at
org.glassfish.jersey.server.ServerRuntime$2.run(ServerRuntime.java:309)
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271) at
org.glassfish.jersey.internal.Errors$1.call(Errors.java:267) at
org.glassfish.jersey.internal.Errors.process(Errors.java:315) at
org.glassfish.jersey.internal.Errors.process(Errors.java:297) at
org.glassfish.jersey.internal.Errors.process(Errors.java:267) at
org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:317)
at
org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:292)
at
org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:1139)
at
org.glassfish.jersey.grizzly2.httpserver.GrizzlyHttpContainer.service(GrizzlyHttpContainer.java:375)
at
org.glassfish.admin.rest.adapter.JerseyContainerCommandService$3.service(JerseyContainerCommandService.java:173)
at
org.glassfish.admin.rest.adapter.RestAdapter.service(RestAdapter.java:179)
at
com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:459)
at
com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:167)
at
org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:206)
at
org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:180)
at
org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:235)
at
org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at
org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:283)
at
org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:200)
at
org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:132)
at
org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:111)
at
org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at
org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:536)
at
org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
at
org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
at
org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
at
org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
at
org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:591)
at
org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:571)
at java.lang.Thread.run(Thread.java:748) Caused by:
org.glassfish.deployment.common.DeploymentException: Can't find
resource for bundle java.util.PropertyResourceBundle, key
enterprise.deployment.appclient.noManifest at
java.util.ResourceBundle.getObject(ResourceBundle.java:450) at
java.util.ResourceBundle.getString(ResourceBundle.java:407) at
org.glassfish.appclient.server.core.AppClientDeployerHelper.generateAppClientFacade(AppClientDeployerHelper.java:533)
at
org.glassfish.appclient.server.core.AppClientDeployerHelper.prepareJARs(AppClientDeployerHelper.java:489)
at
org.glassfish.appclient.server.core.NestedAppClientDeployerHelper.prepareJARs(NestedAppClientDeployerHelper.java:153)
at
org.glassfish.appclient.server.core.AppClientDeployer.generateArtifacts(AppClientDeployer.java:293)
at
org.glassfish.javaee.core.deployment.JavaEEDeployer.prepare(JavaEEDeployer.java:224)
... 71 more ]]
I also found this decode from theAppClientDeployerHelper.java class:
ACC007 The app client {0,choice,0#file|1#directory} {1} does not
contain a manifest; the app client container cannot process it.
Embedded programs should pass URIs with scheme "jar:" for JAR files
and scheme "file:" for directories. Cause: The file might not be a
valid app client JAR or undeployed EAR. It might be another kind of
file or have become corrupted. Action: Make sure to specify a valid
app client JAR file or an EAR which contains at least one app client.

Altering the EAR plugin in Maven which auto generated the application.xml used by Glassfish for application deployment seemed to fix this problem. The application would actually deploy without errors in directory format using Eclipse, however remote deployment was the problem. Fixed by the following code.
<artifactId>maven-ear-plugin</artifactId>
<configuration>
<includeLibInApplicationXml>false</includeLibInApplicationXml>

Java GlassFish The module has not been deployed

I have just created a web application with my local server and when I try to run this project, NetBeans answers me with this: /project_path/nbproject/build-impl.xml:1049: The module has not been deployed.
When I look at GlassFish log, I can read that there is a problem with connection to database. I use local MySQL. When I was adding this database to data source, I correctly filled input areas because when I run this project for the first time 2 days ago, everything was working perfectly.
GlassFish log:
Internal Exception: javax.naming.NamingException: Lookup failed for 'java:app/Quizzer' in SerialContext[myEnv={java.naming.factory.initial=com.sun.enterprise.naming.impl.SerialInitContextFactory, java.naming.factory.state=com.sun.corba.ee.impl.presentation.rmi.JNDIStateFactoryImpl, java.naming.factory.url.pkgs=com.sun.enterprise.naming} [Root exception is javax.naming.NamingException: Invocation exception: Got null ComponentInvocation ]
at org.eclipse.persistence.internal.jpa.EntityManagerSetupImpl.deploy(EntityManagerSetupImpl.java:815)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryDelegate.getAbstractSession(EntityManagerFactoryDelegate.java:205)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryDelegate.createEntityManagerImpl(EntityManagerFactoryDelegate.java:305)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryImpl.createEntityManagerImpl(EntityManagerFactoryImpl.java:337)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryImpl.createEntityManager(EntityManagerFactoryImpl.java:303)
at data.QuestionDAO.<init>(QuestionDAO.java:25)
at data.__EJB31_Generated__QuestionDAO__Intf____Bean__.<init>(Unknown Source)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at java.lang.Class.newInstance(Class.java:442)
at com.sun.ejb.containers.BaseContainer.instantiateOptionalEJBLocalBusinessObjectImpl(BaseContainer.java:3866)
at com.sun.ejb.containers.StatelessSessionContainer.initializeHome(StatelessSessionContainer.java:237)
at com.sun.ejb.containers.StatelessContainerFactory.createContainer(StatelessContainerFactory.java:63)
at org.glassfish.ejb.startup.EjbApplication.loadContainers(EjbApplication.java:221)
at org.glassfish.ejb.startup.EjbDeployer.load(EjbDeployer.java:291)
at org.glassfish.ejb.startup.EjbDeployer.load(EjbDeployer.java:99)
at org.glassfish.internal.data.ModuleInfo.load(ModuleInfo.java:206)
at org.glassfish.internal.data.ApplicationInfo.load(ApplicationInfo.java:313)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:496)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:219)
at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:491)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:539)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:535)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:534)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:565)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:557)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:556)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1464)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1300(CommandRunnerImpl.java:109)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1846)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1722)
at com.sun.enterprise.v3.admin.AdminAdapter.doCommand(AdminAdapter.java:534)
at com.sun.enterprise.v3.admin.AdminAdapter.onMissingResource(AdminAdapter.java:224)
at org.glassfish.grizzly.http.server.StaticHttpHandlerBase.service(StaticHttpHandlerBase.java:189)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:459)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:167)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:206)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:180)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:235)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:283)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:200)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:132)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:111)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:536)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:591)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:571)
at java.lang.Thread.run(Thread.java:745)
Caused by: Exception [EclipseLink-7060] (Eclipse Persistence Services - 2.6.1.v20150605-31e8258): org.eclipse.persistence.exceptions.ValidationException
Exception Description: Cannot acquire data source [java:app/Quizzer].
Internal Exception: javax.naming.NamingException: Lookup failed for 'java:app/Quizzer' in SerialContext[myEnv={java.naming.factory.initial=com.sun.enterprise.naming.impl.SerialInitContextFactory, java.naming.factory.state=com.sun.corba.ee.impl.presentation.rmi.JNDIStateFactoryImpl, java.naming.factory.url.pkgs=com.sun.enterprise.naming} [Root exception is javax.naming.NamingException: Invocation exception: Got null ComponentInvocation ]
at org.eclipse.persistence.exceptions.ValidationException.cannotAcquireDataSource(ValidationException.java:523)
at org.eclipse.persistence.sessions.JNDIConnector.connect(JNDIConnector.java:121)
at org.eclipse.persistence.sessions.DatasourceLogin.connectToDatasource(DatasourceLogin.java:162)
at org.eclipse.persistence.internal.sessions.DatabaseSessionImpl.setOrDetectDatasource(DatabaseSessionImpl.java:207)
at org.eclipse.persistence.internal.sessions.DatabaseSessionImpl.loginAndDetectDatasource(DatabaseSessionImpl.java:750)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryProvider.login(EntityManagerFactoryProvider.java:265)
at org.eclipse.persistence.internal.jpa.EntityManagerSetupImpl.deploy(EntityManagerSetupImpl.java:731)
... 58 more
Caused by: javax.naming.NamingException: Lookup failed for 'java:app/Quizzer' in SerialContext[myEnv={java.naming.factory.initial=com.sun.enterprise.naming.impl.SerialInitContextFactory, java.naming.factory.state=com.sun.corba.ee.impl.presentation.rmi.JNDIStateFactoryImpl, java.naming.factory.url.pkgs=com.sun.enterprise.naming} [Root exception is javax.naming.NamingException: Invocation exception: Got null ComponentInvocation ]
at com.sun.enterprise.naming.impl.SerialContext.lookup(SerialContext.java:491)
at com.sun.enterprise.naming.impl.SerialContext.lookup(SerialContext.java:438)
at com.sun.enterprise.naming.impl.SerialContext.lookup(SerialContext.java:622)
at javax.naming.InitialContext.lookup(InitialContext.java:421)
at javax.naming.InitialContext.lookup(InitialContext.java:421)
at org.eclipse.persistence.sessions.JNDIConnector.connect(JNDIConnector.java:115)
... 63 more

Alot of times when working with glassfish and facing errors like that one just undeploy your web application restart glassfish deploy application clean and build and then run project and it will be fixed.
At least this method works for me :)

Okay, so I have just created a new project, copied all the java classes into the new project from the old one and generated new persistence.xml. Hmm, working now, though the old persistence.xml and a the new one has the same context.

Can't deploy my project on Glassfish

I have a problem with my Java EE application. I can clean and build my project but when i want to deploy it on the server it never ends. Here's log from Glassfish:
Info: visiting unvisited references
Warning: PER02000: PersistenceUnitInfoImpl: For pu-root [C:\Users\Maciej\Documents\NetBeansProjects\EnterpriseApplication3\dist\gfdeploy\EnterpriseApplication3\EnterpriseApplication3-ejb_jar], a jar-file [gfdeploy/EnterpriseApplication3/lib/JavaLibrary3.jar] specified in persistence.xml is not found. The server also looked for a file called [C:\Users\Maciej\Documents\NetBeansProjects\EnterpriseApplication3\dist\gfdeploy\EnterpriseApplication3\gfdeploy__EnterpriseApplication3__lib__JavaLibrary3_jar]. Please verify your application.
Info: EclipseLink, version: Eclipse Persistence Services - 2.5.2.v20140319-9ad6abd
Warning: RAR5038:Unexpected exception while creating resource for pool ejbpool. Exception : javax.resource.spi.SecurityException: No password credential found
Warning: RAR5117 : Failed to obtain/create connection from connection pool [ ejbpool ]. Reason : com.sun.appserv.connectors.internal.api.PoolingException: No password credential found
Warning: RAR5114 : Error allocating connection : [No password credential found]
Severe: Local Exception Stack:
Exception [EclipseLink-4002] (Eclipse Persistence Services - 2.5.2.v20140319-9ad6abd): org.eclipse.persistence.exceptions.DatabaseException
Internal Exception: java.sql.SQLException: No password credential found
Error Code: 0
at org.eclipse.persistence.exceptions.DatabaseException.sqlException(DatabaseException.java:316)
at org.eclipse.persistence.sessions.JNDIConnector.connect(JNDIConnector.java:135)
at org.eclipse.persistence.sessions.DatasourceLogin.connectToDatasource(DatasourceLogin.java:162)
at org.eclipse.persistence.internal.sessions.DatabaseSessionImpl.setOrDetectDatasource(DatabaseSessionImpl.java:204)
at org.eclipse.persistence.internal.sessions.DatabaseSessionImpl.loginAndDetectDatasource(DatabaseSessionImpl.java:741)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryProvider.login(EntityManagerFactoryProvider.java:239)
at org.eclipse.persistence.internal.jpa.EntityManagerSetupImpl.deploy(EntityManagerSetupImpl.java:685)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryDelegate.getAbstractSession(EntityManagerFactoryDelegate.java:204)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryDelegate.getDatabaseSession(EntityManagerFactoryDelegate.java:182)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryImpl.getDatabaseSession(EntityManagerFactoryImpl.java:527)
at org.eclipse.persistence.jpa.PersistenceProvider.createContainerEntityManagerFactory(PersistenceProvider.java:358)
at org.glassfish.persistence.jpa.PersistenceUnitLoader.loadPU(PersistenceUnitLoader.java:199)
at org.glassfish.persistence.jpa.PersistenceUnitLoader.<init>(PersistenceUnitLoader.java:107)
at org.glassfish.persistence.jpa.JPADeployer$1.visitPUD(JPADeployer.java:223)
at org.glassfish.persistence.jpa.JPADeployer$PersistenceUnitDescriptorIterator.iteratePUDs(JPADeployer.java:510)
at org.glassfish.persistence.jpa.JPADeployer.createEMFs(JPADeployer.java:230)
at org.glassfish.persistence.jpa.JPADeployer.prepare(JPADeployer.java:168)
at com.sun.enterprise.v3.server.ApplicationLifecycle.prepareModule(ApplicationLifecycle.java:925)
at org.glassfish.javaee.full.deployment.EarDeployer.prepareBundle(EarDeployer.java:309)
at org.glassfish.javaee.full.deployment.EarDeployer.access$200(EarDeployer.java:88)
at org.glassfish.javaee.full.deployment.EarDeployer$1.doBundle(EarDeployer.java:155)
at org.glassfish.javaee.full.deployment.EarDeployer$1.doBundle(EarDeployer.java:152)
at org.glassfish.javaee.full.deployment.EarDeployer.doOnBundles(EarDeployer.java:232)
at org.glassfish.javaee.full.deployment.EarDeployer.doOnAllTypedBundles(EarDeployer.java:241)
at org.glassfish.javaee.full.deployment.EarDeployer.doOnAllBundles(EarDeployer.java:267)
at org.glassfish.javaee.full.deployment.EarDeployer.prepare(EarDeployer.java:152)
at com.sun.enterprise.v3.server.ApplicationLifecycle.prepareModule(ApplicationLifecycle.java:925)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:434)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:219)
at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:491)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:539)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:535)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:534)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:565)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:557)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:556)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1464)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1300(CommandRunnerImpl.java:109)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1846)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1722)
at com.sun.enterprise.v3.admin.AdminAdapter.doCommand(AdminAdapter.java:534)
at com.sun.enterprise.v3.admin.AdminAdapter.onMissingResource(AdminAdapter.java:224)
at org.glassfish.grizzly.http.server.StaticHttpHandlerBase.service(StaticHttpHandlerBase.java:189)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:459)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:167)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:201)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:175)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:235)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:561)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:565)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:545)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.sql.SQLException: No password credential found
at com.sun.gjc.spi.base.AbstractDataSource.getConnection(AbstractDataSource.java:121)
at org.eclipse.persistence.sessions.JNDIConnector.connect(JNDIConnector.java:123)
... 64 more
Caused by: javax.resource.spi.SecurityException: No password credential found
at com.sun.gjc.util.SecurityUtils.getPasswordCredential(SecurityUtils.java:112)
at com.sun.gjc.spi.DSManagedConnectionFactory.createManagedConnection(DSManagedConnectionFactory.java:100)
at com.sun.enterprise.resource.allocator.LocalTxConnectorAllocator.createResource(LocalTxConnectorAllocator.java:87)
at com.sun.enterprise.resource.pool.ConnectionPool.createSingleResource(ConnectionPool.java:907)
at com.sun.enterprise.resource.pool.ConnectionPool.createResource(ConnectionPool.java:1189)
at com.sun.enterprise.resource.pool.datastructure.RWLockDataStructure.addResource(RWLockDataStructure.java:98)
at com.sun.enterprise.resource.pool.ConnectionPool.addResource(ConnectionPool.java:282)
at com.sun.enterprise.resource.pool.ConnectionPool.createResourceAndAddToPool(ConnectionPool.java:1512)
at com.sun.enterprise.resource.pool.ConnectionPool.createResources(ConnectionPool.java:944)
at com.sun.enterprise.resource.pool.ConnectionPool.initPool(ConnectionPool.java:230)
at com.sun.enterprise.resource.pool.ConnectionPool.internalGetResource(ConnectionPool.java:511)
at com.sun.enterprise.resource.pool.ConnectionPool.getResource(ConnectionPool.java:381)
at com.sun.enterprise.resource.pool.PoolManagerImpl.getResourceFromPool(PoolManagerImpl.java:245)
at com.sun.enterprise.resource.pool.PoolManagerImpl.getResource(PoolManagerImpl.java:170)
at com.sun.enterprise.connectors.ConnectionManagerImpl.getResource(ConnectionManagerImpl.java:360)
at com.sun.enterprise.connectors.ConnectionManagerImpl.internalGetConnection(ConnectionManagerImpl.java:307)
at com.sun.enterprise.connectors.ConnectionManagerImpl.allocateConnection(ConnectionManagerImpl.java:196)
at com.sun.enterprise.connectors.ConnectionManagerImpl.allocateConnection(ConnectionManagerImpl.java:171)
at com.sun.enterprise.connectors.ConnectionManagerImpl.allocateConnection(ConnectionManagerImpl.java:166)
at com.sun.gjc.spi.base.AbstractDataSource.getConnection(AbstractDataSource.java:114)
... 65 more
Severe: Exception while invoking class org.glassfish.persistence.jpa.JPADeployer prepare method
Severe: Exception while invoking class org.glassfish.javaee.full.deployment.EarDeployer prepare method
Severe: org.glassfish.deployment.common.DeploymentException: Exception [EclipseLink-4002] (Eclipse Persistence Services - 2.5.2.v20140319-9ad6abd): org.eclipse.persistence.exceptions.DatabaseException
Internal Exception: java.sql.SQLException: No password credential found
Error Code: 0
at org.glassfish.javaee.full.deployment.EarDeployer.prepare(EarDeployer.java:182)
at com.sun.enterprise.v3.server.ApplicationLifecycle.prepareModule(ApplicationLifecycle.java:925)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:434)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:219)
at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:491)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:539)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:535)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:534)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:565)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:557)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:556)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1464)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1300(CommandRunnerImpl.java:109)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1846)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1722)
at com.sun.enterprise.v3.admin.AdminAdapter.doCommand(AdminAdapter.java:534)
at com.sun.enterprise.v3.admin.AdminAdapter.onMissingResource(AdminAdapter.java:224)
at org.glassfish.grizzly.http.server.StaticHttpHandlerBase.service(StaticHttpHandlerBase.java:189)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:459)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:167)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:201)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:175)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:235)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:561)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:565)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:545)
at java.lang.Thread.run(Thread.java:745)
Caused by: javax.persistence.PersistenceException: Exception [EclipseLink-4002] (Eclipse Persistence Services - 2.5.2.v20140319-9ad6abd): org.eclipse.persistence.exceptions.DatabaseException
Internal Exception: java.sql.SQLException: No password credential found
Error Code: 0
at org.eclipse.persistence.internal.jpa.EntityManagerSetupImpl.deploy(EntityManagerSetupImpl.java:766)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryDelegate.getAbstractSession(EntityManagerFactoryDelegate.java:204)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryDelegate.getDatabaseSession(EntityManagerFactoryDelegate.java:182)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryImpl.getDatabaseSession(EntityManagerFactoryImpl.java:527)
at org.eclipse.persistence.jpa.PersistenceProvider.createContainerEntityManagerFactory(PersistenceProvider.java:358)
at org.glassfish.persistence.jpa.PersistenceUnitLoader.loadPU(PersistenceUnitLoader.java:199)
at org.glassfish.persistence.jpa.PersistenceUnitLoader.<init>(PersistenceUnitLoader.java:107)
at org.glassfish.persistence.jpa.JPADeployer$1.visitPUD(JPADeployer.java:223)
at org.glassfish.persistence.jpa.JPADeployer$PersistenceUnitDescriptorIterator.iteratePUDs(JPADeployer.java:510)
at org.glassfish.persistence.jpa.JPADeployer.createEMFs(JPADeployer.java:230)
at org.glassfish.persistence.jpa.JPADeployer.prepare(JPADeployer.java:168)
at com.sun.enterprise.v3.server.ApplicationLifecycle.prepareModule(ApplicationLifecycle.java:925)
at org.glassfish.javaee.full.deployment.EarDeployer.prepareBundle(EarDeployer.java:309)
at org.glassfish.javaee.full.deployment.EarDeployer.access$200(EarDeployer.java:88)
at org.glassfish.javaee.full.deployment.EarDeployer$1.doBundle(EarDeployer.java:155)
at org.glassfish.javaee.full.deployment.EarDeployer$1.doBundle(EarDeployer.java:152)
at org.glassfish.javaee.full.deployment.EarDeployer.doOnBundles(EarDeployer.java:232)
at org.glassfish.javaee.full.deployment.EarDeployer.doOnAllTypedBundles(EarDeployer.java:241)
at org.glassfish.javaee.full.deployment.EarDeployer.doOnAllBundles(EarDeployer.java:267)
at org.glassfish.javaee.full.deployment.EarDeployer.prepare(EarDeployer.java:152)
... 40 more
Caused by: Exception [EclipseLink-4002] (Eclipse Persistence Services - 2.5.2.v20140319-9ad6abd): org.eclipse.persistence.exceptions.DatabaseException
Internal Exception: java.sql.SQLException: No password credential found
Error Code: 0
at org.eclipse.persistence.exceptions.DatabaseException.sqlException(DatabaseException.java:316)
at org.eclipse.persistence.sessions.JNDIConnector.connect(JNDIConnector.java:135)
at org.eclipse.persistence.sessions.DatasourceLogin.connectToDatasource(DatasourceLogin.java:162)
at org.eclipse.persistence.internal.sessions.DatabaseSessionImpl.setOrDetectDatasource(DatabaseSessionImpl.java:204)
at org.eclipse.persistence.internal.sessions.DatabaseSessionImpl.loginAndDetectDatasource(DatabaseSessionImpl.java:741)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryProvider.login(EntityManagerFactoryProvider.java:239)
at org.eclipse.persistence.internal.jpa.EntityManagerSetupImpl.deploy(EntityManagerSetupImpl.java:685)
... 59 more
Caused by: java.sql.SQLException: No password credential found
at com.sun.gjc.spi.base.AbstractDataSource.getConnection(AbstractDataSource.java:121)
at org.eclipse.persistence.sessions.JNDIConnector.connect(JNDIConnector.java:123)
... 64 more
Caused by: javax.resource.spi.SecurityException: No password credential found
at com.sun.gjc.util.SecurityUtils.getPasswordCredential(SecurityUtils.java:112)
at com.sun.gjc.spi.DSManagedConnectionFactory.createManagedConnection(DSManagedConnectionFactory.java:100)
at com.sun.enterprise.resource.allocator.LocalTxConnectorAllocator.createResource(LocalTxConnectorAllocator.java:87)
at com.sun.enterprise.resource.pool.ConnectionPool.createSingleResource(ConnectionPool.java:907)
at com.sun.enterprise.resource.pool.ConnectionPool.createResource(ConnectionPool.java:1189)
at com.sun.enterprise.resource.pool.datastructure.RWLockDataStructure.addResource(RWLockDataStructure.java:98)
at com.sun.enterprise.resource.pool.ConnectionPool.addResourc
Severe: Exception while preparing the app
Severe: e(ConnectionPool.java:282)
at com.sun.enterprise.resource.pool.ConnectionPool.createResourceAndAddToPool(ConnectionPool.java:1512)
at com.sun.enterprise.resource.pool.ConnectionPool.createResources(ConnectionPool.java:944)
at com.sun.enterprise.resource.pool.ConnectionPool.initPool(ConnectionPool.java:230)
at com.sun.enterprise.resource.pool.ConnectionPool.internalGetResource(ConnectionPool.java:511)
at com.sun.enterprise.resource.pool.ConnectionPool.getResource(ConnectionPool.java:381)
at com.sun.enterprise.resource.pool.PoolManagerImpl.getResourceFromPool(PoolManagerImpl.java:245)
at com.sun.enterprise.resource.pool.PoolManagerImpl.getResource(PoolManagerImpl.java:170)
at com.sun.enterprise.connectors.ConnectionManagerImpl.getResource(ConnectionManagerImpl.java:360)
at com.sun.enterprise.connectors.ConnectionManagerImpl.internalGetConnection(ConnectionManagerImpl.java:307)
at com.sun.enterprise.connectors.ConnectionManagerImpl.allocateConnection(ConnectionManagerImpl.java:196)
at com.sun.enterprise.connectors.ConnectionManagerImpl.allocateConnection(ConnectionManagerImpl.java:171)
at com.sun.enterprise.connectors.ConnectionManagerImpl.allocateConnection(ConnectionManagerImpl.java:166)
at com.sun.gjc.spi.base.AbstractDataSource.getConnection(AbstractDataSource.java:114)
... 65 more
Severe: Exception during lifecycle processing
org.glassfish.deployment.common.DeploymentException: Exception [EclipseLink-4002] (Eclipse Persistence Services - 2.5.2.v20140319-9ad6abd): org.eclipse.persistence.exceptions.DatabaseException
Internal Exception: java.sql.SQLException: No password credential found
Error Code: 0
at org.glassfish.javaee.full.deployment.EarDeployer.prepare(EarDeployer.java:182)
at com.sun.enterprise.v3.server.ApplicationLifecycle.prepareModule(ApplicationLifecycle.java:925)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:434)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:219)
at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:491)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:539)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:535)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:534)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:565)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:557)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:556)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1464)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1300(CommandRunnerImpl.java:109)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1846)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1722)
at com.sun.enterprise.v3.admin.AdminAdapter.doCommand(AdminAdapter.java:534)
at com.sun.enterprise.v3.admin.AdminAdapter.onMissingResource(AdminAdapter.java:224)
at org.glassfish.grizzly.http.server.StaticHttpHandlerBase.service(StaticHttpHandlerBase.java:189)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:459)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:167)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:201)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:175)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:235)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:561)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:565)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:545)
at java.lang.Thread.run(Thread.java:745)
Caused by: javax.persistence.PersistenceException: Exception [EclipseLink-4002] (Eclipse Persistence Services - 2.5.2.v20140319-9ad6abd): org.eclipse.persistence.exceptions.DatabaseException
Internal Exception: java.sql.SQLException: No password credential found
Error Code: 0
at org.eclipse.persistence.internal.jpa.EntityManagerSetupImpl.deploy(EntityManagerSetupImpl.java:766)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryDelegate.getAbstractSession(EntityManagerFactoryDelegate.java:204)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryDelegate.getDatabaseSession(EntityManagerFactoryDelegate.java:182)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryImpl.getDatabaseSession(EntityManagerFactoryImpl.java:527)
at org.eclipse.persistence.jpa.PersistenceProvider.createContainerEntityManagerFactory(PersistenceProvider.java:358)
at org.glassfish.persistence.jpa.PersistenceUnitLoader.loadPU(PersistenceUnitLoader.java:199)
at org.glassfish.persistence.jpa.PersistenceUnitLoader.<init>(PersistenceUnitLoader.java:107)
at org.glassfish.persistence.jpa.JPADeployer$1.visitPUD(JPADeployer.java:223)
at org.glassfish.persistence.jpa.JPADeployer$PersistenceUnitDescriptorIterator.iteratePUDs(JPADeployer.java:510)
at org.glassfish.persistence.jpa.JPADeployer.createEMFs(JPADeployer.java:230)
at org.glassfish.persistence.jpa.JPADeployer.prepare(JPADeployer.java:168)
at com.sun.enterprise.v3.server.ApplicationLifecycle.prepareModule(ApplicationLifecycle.java:925)
at org.glassfish.javaee.full.deployment.EarDeployer.prepareBundle(EarDeployer.java:309)
at org.glassfish.javaee.full.deployment.EarDeployer.access$200(EarDeployer.java:88)
at org.glassfish.javaee.full.deployment.EarDeployer$1.doBundle(EarDeployer.java:155)
at org.glassfish.javaee.full.deployment.EarDeployer$1.doBundle(EarDeployer.java:152)
at org.glassfish.javaee.full.deployment.EarDeployer.doOnBundles(EarDeployer.java:232)
at org.glassfish.javaee.full.deployment.EarDeployer.doOnAllTypedBundles(EarDeployer.java:241)
at org.glassfish.javaee.full.deployment.EarDeployer.doOnAllBundles(EarDeployer.java:267)
at org.glassfish.javaee.full.deployment.EarDeployer.prepare(EarDeployer.java:152)
... 40 more
Caused by: Exception [EclipseLink-4002] (Eclipse Persistence Services - 2.5.2.v20140319-9ad6abd): org.eclipse.persistence.exceptions.DatabaseException
Internal Exception: java.sql.SQLException: No password credential found
Error Code: 0
at org.eclipse.persistence.exceptions.DatabaseException.sqlException(DatabaseException.java:316)
at org.eclipse.persistence.sessions.JNDIConnector.connect(JNDIConnector.java:135)
at org.eclipse.persistence.sessions.DatasourceLogin.connectToDatasource(DatasourceLogin.java:162)
at org.eclipse.persistence.internal.sessions.DatabaseSessionImpl.setOrDetectDatasource(DatabaseSessionImpl.java:204)
at org.eclipse.persistence.internal.sessions.DatabaseSessionImpl.loginAndDetectDatasource(DatabaseSessionImpl.java:741)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryProvider.login(EntityManagerFactoryProvider.java:239)
at org.eclipse.persistence.internal.jpa.EntityManagerSetupImpl.deploy(EntityManagerSetupImpl.java:685)
... 59 more
Caused by: java.sql.SQLException: No password credential found
at com.sun.gjc.spi.base.AbstractDataSource.getConnection(AbstractDataSource.java:121)
at org.eclipse.persistence.sessions.JNDIConnector.connect(JNDIConnector.java:123)
this is my persistance.xml
<?xml version="1.0" encoding="UTF-8"?>
<persistence version="2.1" xmlns="http://xmlns.jcp.org/xml/ns/persistence" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://xmlns.jcp.org/xml/ns/persistence http://xmlns.jcp.org/xml/ns/persistence/persistence_2_1.xsd">
<persistence-unit name="EnterpriseApplication3-ejbPU" transaction-type="JTA">
<jta-data-source>jdbc/app</jta-data-source>
<jar-file>gfdeploy/EnterpriseApplication3/lib/JavaLibrary3.jar</jar-file>
<exclude-unlisted-classes>false</exclude-unlisted-classes>
<properties>
<property name="javax.persistence.schema-generation.database.action" value="create"/>
</properties>
</persistence-unit>
</persistence>
and i created jdbc resource called app and i,ve created conection pool.
OK problem solved i messed something in connection pool configuration. Thanks a lot.

Just focusing on this part:
Exception : javax.resource.spi.SecurityException: No password credential found
Either your persistence.xml is setup wrong, or your glassfish instance doesn't have the jdbc resources configured.
To configure the resources, right-click on 'GlassFish Server', and choose 'View Domain Admin Console'.
[UPDATE]
Further communication and research of your logs (thanks for the cleanup), makes me suspect that the connection pool is not setup right. From within the Admin Console, you should be able to do a successful 'ping' on the connectionpool which you have apparently named as 'ejbpool'.

How do I resolve this communication link failure?

I'm trying to create a web app. I am using mysql server. I've searched for similar questions but I couldn't quite pinpoint my issue. Any help would be greatly appreciated. How do I identify the cause of the communication link failure?
Here is the glassfish server log :
Info: visiting unvisited references
Info: visiting unvisited references
Info: visiting unvisited references
Warning: Ignore WEB-INF/sun-web.xml in archive /C:/Users/Timothy.Timothy-PC/Downloads/FowlTricks2/build/web/, as WLS counterpart runtime xml WEB-INF/glassfish-web.xml is present in the same archive.
Info: EclipseLink, version: Eclipse Persistence Services - 2.5.2.v20140319-9ad6abd
Warning: jdbc.exc_get_conn
Severe: Local Exception Stack:
Exception [EclipseLink-4002] (Eclipse Persistence Services - 2.5.2.v20140319-9ad6abd): org.eclipse.persistence.exceptions.DatabaseException
Internal Exception: java.sql.SQLException: Connection could not be allocated because: Communications link failure
The last packet sent successfully to the server was 0 milliseconds ago. The driver has not received any packets from the server.
Error Code: 0
at org.eclipse.persistence.exceptions.DatabaseException.sqlException(DatabaseException.java:316)
at org.eclipse.persistence.sessions.JNDIConnector.connect(JNDIConnector.java:135)
at org.eclipse.persistence.sessions.DatasourceLogin.connectToDatasource(DatasourceLogin.java:162)
at org.eclipse.persistence.internal.sessions.DatabaseSessionImpl.setOrDetectDatasource(DatabaseSessionImpl.java:204)
at org.eclipse.persistence.internal.sessions.DatabaseSessionImpl.loginAndDetectDatasource(DatabaseSessionImpl.java:741)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryProvider.login(EntityManagerFactoryProvider.java:239)
at org.eclipse.persistence.internal.jpa.EntityManagerSetupImpl.deploy(EntityManagerSetupImpl.java:685)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryDelegate.getAbstractSession(EntityManagerFactoryDelegate.java:204)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryDelegate.createEntityManagerImpl(EntityManagerFactoryDelegate.java:304)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryImpl.createEntityManagerImpl(EntityManagerFactoryImpl.java:336)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryImpl.createEntityManager(EntityManagerFactoryImpl.java:302)
at org.glassfish.persistence.jpa.JPADeployer$2.visitPUD(JPADeployer.java:451)
at org.glassfish.persistence.jpa.JPADeployer$PersistenceUnitDescriptorIterator.iteratePUDs(JPADeployer.java:510)
at org.glassfish.persistence.jpa.JPADeployer.iterateInitializedPUsAtApplicationPrepare(JPADeployer.java:492)
at org.glassfish.persistence.jpa.JPADeployer.event(JPADeployer.java:398)
at org.glassfish.kernel.event.EventsImpl.send(EventsImpl.java:131)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:487)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:219)
at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:491)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:539)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:535)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:534)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:565)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:557)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:556)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1464)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1300(CommandRunnerImpl.java:109)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1846)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1722)
at com.sun.enterprise.v3.admin.AdminAdapter.doCommand(AdminAdapter.java:534)
at com.sun.enterprise.v3.admin.AdminAdapter.onMissingResource(AdminAdapter.java:224)
at org.glassfish.grizzly.http.server.StaticHttpHandlerBase.service(StaticHttpHandlerBase.java:189)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:459)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:167)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:201)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:175)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:235)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:561)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:565)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:545)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.sql.SQLException: Connection could not be allocated because: Communications link failure
The last packet sent successfully to the server was 0 milliseconds ago. The driver has not received any packets from the server.
at com.sun.enterprise.connectors.service.ConnectorConnectionPoolAdminServiceImpl.getConnection(ConnectorConnectionPoolAdminServiceImpl.java:1635)
at com.sun.enterprise.connectors.ConnectorRuntime.getConnection(ConnectorRuntime.java:639)
at org.glassfish.jdbcruntime.service.JdbcDataSource.getConnection(JdbcDataSource.java:86)
at org.eclipse.persistence.sessions.JNDIConnector.connect(JNDIConnector.java:123)
... 53 more
Caused by: javax.resource.spi.ResourceAllocationException: Connection could not be allocated because: Communications link failure
The last packet sent successfully to the server was 0 milliseconds ago. The driver has not received any packets from the server.
at com.sun.gjc.spi.DSManagedConnectionFactory.createManagedConnection(DSManagedConnectionFactory.java:129)
at com.sun.enterprise.connectors.service.ConnectorConnectionPoolAdminServiceImpl.getUnpooledConnection(ConnectorConnectionPoolAdminServiceImpl.java:702)
at com.sun.enterprise.connectors.service.ConnectorConnectionPoolAdminServiceImpl.getConnection(ConnectorConnectionPoolAdminServiceImpl.java:1627)
... 56 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure
The last packet sent successfully to the server was 0 milliseconds ago. The driver has not received any packets from the server.
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:408)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1117)
at com.mysql.jdbc.MysqlIO.readPacket(MysqlIO.java:673)
at com.mysql.jdbc.MysqlIO.doHandshake(MysqlIO.java:1084)
at com.mysql.jdbc.ConnectionImpl.coreConnect(ConnectionImpl.java:2465)
at com.mysql.jdbc.ConnectionImpl.connectOneTryOnly(ConnectionImpl.java:2498)
at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2283)
at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:822)
at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:47)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:408)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:404)
at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:317)
at com.mysql.jdbc.jdbc2.optional.MysqlDataSource.getConnection(MysqlDataSource.java:443)
at com.mysql.jdbc.jdbc2.optional.MysqlDataSource.getConnection(MysqlDataSource.java:141)
at com.mysql.jdbc.jdbc2.optional.MysqlDataSource.getConnection(MysqlDataSource.java:111)
at com.sun.gjc.spi.DSManagedConnectionFactory.createManagedConnection(DSManagedConnectionFactory.java:115)
... 58 more
Caused by: java.io.EOFException: Can not read response from server. Expected to read 4 bytes, read 0 bytes before connection was unexpectedly lost.
at com.mysql.jdbc.MysqlIO.readFully(MysqlIO.java:3052)
at com.mysql.jdbc.MysqlIO.readPacket(MysqlIO.java:597)
... 75 more
Severe: Exception while deploying the app [FowlTricks2]
Severe: Exception during lifecycle processing
org.glassfish.deployment.common.DeploymentException: Exception [EclipseLink-4002] (Eclipse Persistence Services - 2.5.2.v20140319-9ad6abd): org.eclipse.persistence.exceptions.DatabaseException
Internal Exception: java.sql.SQLException: Connection could not be allocated because: Communications link failure
The last packet sent successfully to the server was 0 milliseconds ago. The driver has not received any packets from the server.
Error Code: 0
at org.eclipse.persistence.internal.jpa.EntityManagerSetupImpl.deploy(EntityManagerSetupImpl.java:766)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryDelegate.getAbstractSession(EntityManagerFactoryDelegate.java:204)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryDelegate.createEntityManagerImpl(EntityManagerFactoryDelegate.java:304)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryImpl.createEntityManagerImpl(EntityManagerFactoryImpl.java:336)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryImpl.createEntityManager(EntityManagerFactoryImpl.java:302)
at org.glassfish.persistence.jpa.JPADeployer$2.visitPUD(JPADeployer.java:451)
at org.glassfish.persistence.jpa.JPADeployer$PersistenceUnitDescriptorIterator.iteratePUDs(JPADeployer.java:510)
at org.glassfish.persistence.jpa.JPADeployer.iterateInitializedPUsAtApplicationPrepare(JPADeployer.java:492)
at org.glassfish.persistence.jpa.JPADeployer.event(JPADeployer.java:398)
at org.glassfish.kernel.event.EventsImpl.send(EventsImpl.java:131)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:487)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:219)
at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:491)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:539)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:535)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:534)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:565)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:557)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:556)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1464)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1300(CommandRunnerImpl.java:109)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1846)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1722)
at com.sun.enterprise.v3.admin.AdminAdapter.doCommand(AdminAdapter.java:534)
at com.sun.enterprise.v3.admin.AdminAdapter.onMissingResource(AdminAdapter.java:224)
at org.glassfish.grizzly.http.server.StaticHttpHandlerBase.service(StaticHttpHandlerBase.java:189)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:459)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:167)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:201)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:175)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:235)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:561)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:565)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:545)
at java.lang.Thread.run(Thread.java:745)``

same here.
I have a running project, working since years.
Today the system stopped working with this exact failure.
Haven't found a solution yet.