Zelix KlassMaster "Class not found" - java

I'm using Zelix KlassMaster version 8.0.2 to obfuscate a JAR file. The JAR itself works fine but when I try to obfuscate it, Zelix says that a class has not been found:
Error while opening classes. : 'javax.annotation.Nullable' not found. Cannot proceed to next step. Please adjust your Zelix KlassMaster classpath or class file selections.
If I find the said JAR file e.g. here and add it to the classpath, another class is not found. This keeps going on and on even though these classes/libraries are never needed or used by my application (which uses some 3rd party libraries obviously).
How do I fix this? I just want to obfuscate my JAR file without selecting additional nonsense external JAR files because no necessary classes are actually missing.

All you have to do is to add all of your projects libraries to the class path as well as the default Java libraries. What you describe happens when you open the project's libraries instead of adding them at the classpath.

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Include library for JAXB into JAR file without using Maven

I have a Java project in Eclipse that uses javax.xml.bind.JAXB classes.
Starting the application from inside Eclipse works perfectly.
However, when I export the project as (runnable) jar file and run it using java -jar myfile.jar it terminates with a java.lang.NoClassDefFoundError: javax/xml/bin/JAXBException.
Also playing around with the three options for Library handling in Eclipse Runnable JAR File Specification (extract, package, sub-folder) does not solve the problem - in fact, no libraries are exported in any case.
It seems that the library for JAXB (it seems to be rt.jar) is not considered as required library to be included into the jar file. However, when running the jar file, it is not found nevertheless.
I have read that the library must be added to the classpath but this seems strange to me as rt.jar is part of the standard libraries. Is there something special about this library?
Currently, I do not use Maven or something similar for dependency and build management and if possible I want to avoid it for the future. I think, there also must be a way without Maven.
I found several posts here on SO and in Google but was not able to work out a solution for me.
Thank you very much!
As remarked in the comments, Eclipse probably uses a different Java version than your system (by default). The JAXB API and implementation is not available in JRE 11.
To work on all versions of Java, your best option is:
Download the JAXB RI distribution. Nowadays I'll choose version 3.0 (which is binary incompatible with the one in Java 8, since it uses jakarta.xml instead of javax.xml for the packages name) as in Juliano's answer:
https://repo1.maven.org/maven2/com/sun/xml/bind/jaxb-ri/3.0.0/jaxb-ri-3.0.0.zip
Copy the 4 files jakarta.activation.jar, jakarta.xml.bind-api.jar, jaxb-core.jar and jaxb-impl.jar from the mod folder into the library folder of your project (let's say lib),
Add the 4 libraries to the project's "Build Path",
Make sure you use JAXB 3.0 throughout your code (the packages of the annotations and classes start with jakarta.xml)
Run the application once in Eclipse, so it updates the Run Configuration (or update the classpath of the Run Configuration yourself),
Export the project to a JAR file.
Among the three export options proposed by Eclipse: "extract required libraries" will create a so-called fat jar (everything in one JAR-file). It works, but it deletes the licence notices in the JAXB jars (so it can not be distributed). "copy required libraries" is your best option, but then you have to move the jar file together with the subfolder. _". "package required libraries" will not work, since jars in a jar are not read by the JVM (unlike JARs in a WAR package).
Edit by the author of the question:
The above worked for me well except that I experienced small differences how the two libraries (javax.xml in Java 8 and jakarta.xml in version 3.0) handle #XmlAttribute annotations. In javax.xml, I could place an annotation without further arguments on the public getter-method, e.g.
#XmlAttribute
public String getDescription() {
return "";
}
And this worked when the attribute name in the xml file is description. However, with jakarta.xml I had to add the name of the attribute:
#XmlAttribute(name="description")
public String getDescription() {
return "";
}
Just in the case, that others experience the same problem.
I thought about this myself too, since I am new to java.
There is a description of a Extension Mechanism in the java tutorials (SE), but it is no longer used since deprecated by Oracle. See, just to know of what I am talking about: https://docs.oracle.com/javase/tutorial/ext/index.html
What was this Extension thing in a nutshell: just drop your jar files inside the jdk lib and you could use the import keyword in all your classes to use the new jar file.
However, others had to do the same thing in their computers to run a class which imported your own update to the jdk.
Maven do something like the above. It searches on the pom file which other jar files it should include in your jar when you build an application. Hence, it may run anywhere.
Another way of looking into this is the answer which you should try to do.
A clunckier way of doing what Maven does without its pom structure is to create a new folder inside your src folder and copy the jakarta.xml.bind-api.jar. Just like when you create an object (aJavaBean) and need to use it in another class.
The file you need to include in your library is available at:
https://repo1.maven.org/maven2/com/sun/xml/bind/jaxb-ri/3.0.0/jaxb-ri-3.0.0.zip
Finally, extract the classes inside this newly created folder and use the import keyword in the classes that depend on it just like when you create your own classes.
Another thing you should try is to use the manifest file when making your jar.
https://docs.oracle.com/javase/tutorial/deployment/jar/manifestindex.html
This tutorial shows how to include a classpath to the files you need to run as a dependency. Make sure that everything you need is inside the newly created jar file.
Also, set the entry point in the manifest, so your application can run just using
java -jar MyJar.jar
in the command line.
The easiest way is to use JDK 8 (or older JDK) that has embedded the required jaxb library. The hard way requires that you set your CLASSPATH variable pointing to each required jaxb jar file.
From spec at https://javaee.github.io/jaxb-v2/doc/user-guide/release-documentation.html#a-2-3-0, the following jars are required using a java version 11 or above.
jaxb-api.jar
jaxb-core.jar
jaxb-impl.jar
A good article on this question is https://www.jesperdj.com/2018/09/30/jaxb-on-java-9-10-11-and-beyond/

How to edit .java files imported in Eclipse from a .jar file

I have a question, perhaps it was already answered, but i didn't manage to find it and I appologize if the solution already exists (let me know if it is before deleting my thread).
Problem is:
I have created a program on another PC and exported it from eclipse as a .jar file. It works on my main PC when I double click on it but when I import it in Eclipse I can't find the .java file. So i can't edit it.
What I have done so far:
In eclipse I have created a new empty project
I have right clicked,import, archive file, selected the .class files that eclipse sees, but when I am in the Project Explorer in Eclipse I can't find the .java file where the main is. I mean I can click run as a program and it works, but there is no .java file, only .class files. What am I doing wrong?
That cranes.class should be cranes.java. At least on my other PC it is.
Program works fine, but I can't edit it on my main PC. What am I doing wrong?
Thanks and best regards
You need to select the Export Java source files and resources option while creating the jar file and then your Java files will be available on importing the project from the jar file.
This is similar to how you use other libraries. You depend on the Jar file which contains class bytecode (compiled) of java code. You can't edit any of such files directly in the project you are using it. Thought you can always extends functionalities in your current project using simple inheritance concepts.
If you think such functionalities are trivial you should prefer to change in the original project rebuild the jar and use the newer version of jar.
However if you feel similar things for 3rd party library you can
always make changes after taking fork from those library source
code (if open source) and build and use your own version or go
ahead and raise pull request if you are confident about your
changes.
Mostly when you build a jar file, all you have in it are .class files; these are the result of compiling .java files, and so are not editable with text editors.
You CAN create a jar file that contains .java (also known as source) files, and even a jar file that contains both .java and .class files, but if you ask eclipse to create a jar file, by default it is just going to put .class files and files from resource folders in it, not .java files.
Assuming from the question, the jar is a library created by OP, by compiling java files into class files and packing/exporting them. Although the class files can't be edited in any IDE, they can be de-compiled into Java files by using third-party applications.
I personally use IntelliJ for this de-compiling source files authored by me
Note: Although this gives OP the desired functionality, it may lead to violations if the classes are Copyrighted.
As IntelliJ states, they neither encourage nor discourage de-compiling class files and the decision is purely to the user's discretion.
EDIT: It is always recommended to use the original source files for editing. Try to host them on git so that it may be retrieved anytime required
It may be simpler to not use eclipse but jar/zip/tar your project directory on the one computer and simply extract it onto the other, then open that folder as a new project in Eclipse.
Best is the suggestion from #SanjayBharathi to use git and clone the repo on your other machine.

How can I set my JAR file class path to use an outside folder for dependencies?

I am making a java web application that a hosting service is running for me, and I must recompile and send it to the host every time I make a change. I would like to be able to put all of my libraries in a folder in the host, and only have to compile my jar that will know that its dependencies are next to it.
I have used the IntelliJ IDEA builder located in File > Project Structure. I export all library jars used in a folder next to the main jar named lib, and I have learned about wildcards so I set the classpath to be \lib\*. This did not work and I was thrown a chunky NoClassDefFoundError in my server's console.
I know this must be possible. How should I change my approach?
EDIT: I have researched a bit deeper, and the answer to this question states at the bottom that the wildcard system is not honored in the jar manifest attribute. Do I have to include all files individually (And if so, how?) ?

Class-Path setting in executable jar doesn't seem to work for plugins

I've looked here and the wider web to find a solution to this. There's related material, but I've been unable to find anything useful about my specific question.
I'm working on some Java software that needs to accept plugins. I don't want to use a fancy framework like OSGi, and ServiceLoader seems to offer the right level of support. I've basically got it working but am having a problem with classpaths. My directory structure is as follows:
progfolder
|___________ plugintest.jar
|___________/plugins
|________ plugin1.jar
|________ plugin2.jar
If I run plugintest.jar with java -jar plugintest.jar then it doesn't find the plugins even if I add ./plugins/ (or variations of this) to the Class-Path: in the manifest. Reading suggests that this only works for classes, not jars, so I've tried putting the classes from the two plugins inside plugins both directly and within their full path of directories, but with no success.
I'm not allowed to add -cp plugins/* to add the plugins folder to the classpath if I'm using the -jar option. To get round this, I can run using java -cp plugintest.jar;plugins/* com.plugin.test.Main and this works as expected - the two plugins are detected and accessible via code, but the command line is a bit clunky, although I could live with it, if it's the best option.
I found another solution where I create a classloader for jars found in plugins, which works in this simple case, but reading suggests I might run into security issues in a more complex application.
Is there a way to fix things so I can simply run with java -jar plugintest.jar without having to do my own class loading or is this just the way it is?
Ok, so at least a partial answer, following more experimentation. Putting the class files in the plugins directory does work, after all, but you have to remember to include the META-INF directory and META-INF/services. The file in the services directory has to include references to all the plugins.
It would be nice if there was a solution that allowed the plugin jar files to be used directly, but creating a class loader seems to be the only way to do this (that I've found, at least), and this may cause security issues, as previously noted.
last time I faced with similar problem [1]. I found answer in java documentation [2]:
Note: The Class-Path header points to classes or JAR files on the local network, not JAR files within the JAR file or classes accessible over Internet protocols. To load classes in JAR files within a JAR file into the class path, you must write custom code to load those classes. For example, if MyJar.jar contains another JAR file called MyUtils.jar, you cannot use the Class-Path header in MyJar.jar's manifest to load classes in MyUtils.jar into the class path.
[1] https://github.com/narvi-blog/01-exec-jar#dependency-jar-files-within-an-executable-jar-are-not-so-easy
[2] https://docs.oracle.com/javase/tutorial/deployment/jar/downman.html

Adding a class to an exisiting Jar files - Eclipse

I think this is a super easy question, but im new to this and not sure what to do. So I have added an external jar file into one of my projects, and was able to decompile the classes using JAD to see some of the class files, the thing is I want to add a new class to one of the directories in same JAR file, compile it and update the jar file. I was googling and I came up with things like an 'ANT build file' but not sure how that would work?
Thanks!
First of all i would check out if the developper of that JAR has provided the source to the classes. This reduces the possibility of JAD not beeing able to fully decompile all the class information.
However once you have all the .java files (including your changed or added class) you can let eclipse build the jar file as follows:
1.) Compile the .java files (Project -> clean..)
2.) File -> Export -> Java -> Jar file (click next)
3.) Select anything that belongs to the jar, input a name and click finish (Note the checkbox that says to export generated class files and resources).
Regarding Ant/ Maven and stuff: Those are just tools that help you. The same result you can archive by opening a console and use javac.exe to compile you can use ant or maven to compile your classes. Its just a matter of configuration.
I recomend you skip Ant right here and directly do the Maven in 5 Minutes tutorial :)
Your approach works. But you can have two classes with same name and package. This will remove the necessarily of updating the jar file.
You must set the loading order to make sure that your new modified version will be used instead of the one which is in the jar file.
Possible to use two java classes with same name and same package?
Before any tweak and class loader, test this approach, may be the default class loader behavior will do what you want.

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