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Continuous compile time I get error 90% after opencvde make command. More information is available

[ 91%] Generate files for Java bindings
Traceback (most recent call last):
File "/home/fcemtopall/Masaüstü/opencv-3.4.1/modules/java/generator/../generator/gen_java.py", line 1093, in
copy_java_files(java_files_dir, target_path)
File "/home/fcemtopall/Masaüstü/opencv-3.4.1/modules/java/generator/../generator/gen_java.py", line 1032, in copy_java_files
src = checkFileRemap(java_file)
File "/home/fcemtopall/Masaüstü/opencv-3.4.1/modules/java/generator/../generator/gen_java.py", line 25, in checkFileRemap
assert path[-3:] != '.in', path
AssertionError: /home/fcemtopall/Masaüstü/opencv-3.4.1/modules/java/generator/src/java/org/opencv/osgi/OpenCVNativeLoader.java.in
modules/java_bindings_generator/CMakeFiles/gen_opencv_java_source.dir/build.make:315: recipe for target 'CMakeFiles/dephelper/gen_opencv_java_source' failed
make[2]: * [CMakeFiles/dephelper/gen_opencv_java_source] Error 1
CMakeFiles/Makefile2:2686: recipe for target 'modules/java_bindings_generator/CMakeFiles/gen_opencv_java_source.dir/all' failed
make[1]: * [modules/java_bindings_generator/CMakeFiles/gen_opencv_java_source.dir/all] Error 2
Makefile:160: recipe for target 'all' failed
make: *** [all] Error 2

It is a bug with OpenCV, so the solution is in two ways:
Open modules/java/generator/gen_java.py file and edit the line 1029 from
re_package = re.compile(r'^package +(.+);$')
to
re_package = re.compile(r'^package +(.+);')
Or just redownload the source and it is OK.

I suspect the issue is with your path.
/home/fcemtopall/Masaüstü/opencv-3.4.1/modules/java/generator/src/java/org/opencv/osgi/OpenCVNativeLoader.java.in
Masaüstü
See this two U letters which are from another language. This might interpret a compilation issue when trying to generate JNI.
Try creating another directory under home such as /home/abc and compile from there.

Couldn't load file: assets/libgdx128.png

I'm building a game in LibGDX and have began adding visual aspects of the game such as the logo. Considering that I've been using the default libgdxXXX.png files as placeholders for my logo, and that I'm replacing them with my logo, I didn't feel it had any more purpose in my program. I decide to delete it; but it decide to not compile and come up with this error:
Exception in thread "LWJGL Application" com.badlogic.gdx.utils.GdxRuntimeException: Couldn't load file: assets/libgdx128.png
at com.badlogic.gdx.graphics.Pixmap.<init>(Pixmap.java:148)
at com.badlogic.gdx.backends.lwjgl.LwjglGraphics.setupDisplay(LwjglGraphics.java:196)
at com.badlogic.gdx.backends.lwjgl.LwjglApplication.mainLoop(LwjglApplication.java:142)
at com.badlogic.gdx.backends.lwjgl.LwjglApplication$1.run(LwjglApplication.java:124)
Caused by: com.badlogic.gdx.utils.GdxRuntimeException: File not found: assets/libgdx128.png (Internal)
at com.badlogic.gdx.files.FileHandle.read(FileHandle.java:136)
at com.badlogic.gdx.files.FileHandle.readBytes(FileHandle.java:222)
at com.badlogic.gdx.graphics.Pixmap.<init>(Pixmap.java:145)
... 3 more
Somehow, when I return the files from the Trash (I use Linux), it works again! I have checked my code and found nothing I wrote referred to those files. When I deleted the files 1 by 1, the error changes from libgdx128.png to libgdx64.png to libgdx32.png to libgdx16.png respectively. I have changed all the references from libgdx128.png to my logo.png in my code; yet when I try to delete the libgdx logo and run my program, it fails to compile! Any ideas?

I found out my problem. I forgot all about this code at DesktopLauncher.java:
for (int size : new int[] { 128, 64, 32, 16 }) {
configuration.addIcon("assets/libgdx" + size + ".png", FileType.Internal);
}
I did not know it was referencing to the files I have deleted. The configuration.addIcon(); was the code setting the program icon - similar to how a favicon works. I will be adding my own icon now that I know what the code does.
Hope this helps anyone else confused about the error.

atomchace function in biojava

Hi everyone I'm fairly new to biojava and trying to implement this piece of code:
AtomCache cache = new AtomCache();
cache.setPath("/tmp/");
FileParsingParameters params = cache.getFileParsingParams();
params.setLoadChemCompInfo(true);
StructureIO.setAtomCache(cache);
Structure strucuture = StructureIO.getStructure("4HHB");
after executing these lines im getting the following error message:
Exception in thread "main" java.lang.NoSuchFieldError: lineSplit
at org.biojava.bio.structure.align.util.UserConfiguration.(UserConfiguration.java:87)
at org.biojava.bio.structure.align.util.AtomCache.(AtomCache.java:115)
at protein_structure.main(protein_structure.java:27)
Java Result: 1
I cant figure out the reason for this error, I downloaded the pdb files for the proteins that Im working with (in this case "4HHB" in the /tmp/ directory but still the same error is showing up. can anyone tell me how Atomcache function works? Thanks

Baksmali error for android odex file

I downloaded core.odex and framework.odex from my Samsung Galaxy Player, in order to make some changes for the hidden apis, following this webpage: https://devmaze.wordpress.com/2011/01/18/using-com-android-internal-part-2-hacking-around/
Also, I got baksmali and smali from here: http://forum.xda-developers.com/showthread.php?t=1650243
Now, when I run the command: java -jar baksmali-1.3.3.jar -c :core.odex -x framework.odex, the following error appears:
UNEXPECTED TOP-LEVEL EXCEPTION:
org.jf.dexlib.Util.ExceptionWithContext: regCount does not match the number of arguments of the method
at org.jf.dexlib.Util.ExceptionWithContext.withContext(ExceptionWithContext.java:54)
at org.jf.dexlib.Code.InstructionIterator.IterateInstructions(InstructionIterator.java:92)
at org.jf.dexlib.CodeItem.readItem(CodeItem.java:154)
at org.jf.dexlib.Item.readFrom(Item.java:76)
at org.jf.dexlib.OffsettedSection.readItems(OffsettedSection.java:48)
at org.jf.dexlib.Section.readFrom(Section.java:143)
at org.jf.dexlib.DexFile.<init>(DexFile.java:431)
at org.jf.baksmali.main.main(main.java:265)
Caused by: java.lang.RuntimeException: regCount does not match the number of arguments of the method
at org.jf.dexlib.Code.Format.Instruction3rc.checkItem(Instruction3rc.java:129)
at org.jf.dexlib.Code.Format.Instruction3rc.<init>(Instruction3rc.java:79)
at org.jf.dexlib.Code.Format.Instruction3rc.<init>(Instruction3rc.java:44)
at org.jf.dexlib.Code.Format.Instruction3rc$Factory.makeInstruction(Instruction3rc.java:145)
at org.jf.dexlib.Code.InstructionIterator.IterateInstructions(InstructionIterator.java:84)
... 6 more
Error occured at code address 0
code_item #0x159a90
What am I missing or doing wrong?
Appreciate in advance any help you can provide.

Error writing xlsx in R: Could not initialize class sun.java2d.Disposer

I'm using the xlsx package to write Excel files in R:
addPicture('trend_indirect.png' ,sheet1)
addDataFrame(df.ssis_duplmonth ,sheet1, startRow=22)
addDataFrame(df.ssis_dupltrans ,sheet1, startRow=35)
addDataFrame(df.ssis_duplmonth_dir, sheet2, startRow=22)
addDataFrame(df.ssis_dupltrans_dir, sheet2, startRow=55)
saveWorkbook(wb, file="SSIS_import_controls.xlsx")
At this point I get the following error:
> addDataFrame(df.ssis_duplmonth ,sheet1, startRow=22)
Error in .jcall("RJavaTools", "Z", "hasField", .jcast(x, "java/lang/Object"), :
java.lang.NoClassDefFoundError: Could not initialize class sun.java2d.Disposer
R version 2.15.2, 32bit.
Thanks
Edit: I can't really make it reproducible as probably the issue is in my settings but I get the error when I run this:
library('xlsx')
df.test <- iris[1:5, ]
wb <- createWorkbook()
sheet1 <- createSheet(wb, 'Indirect Sales')
addPicture('trend_indirect.png' ,sheet1)
addDataFrame(df.test ,sheet1, startRow=22)
saveWorkbook(wb, file="stack_test.xlsx")
The image is just a simple ggplot graph saved in png. Thanks

Try installing libxtst. That solved a similar problem for me.
I also installed fontconfig and libcups in the course of solving my issue, in case it wasn't libxtst that fixed it.

I was with the same exception but running a Java program using Ubuntu 12.
I've installed libxtst6 and add this java parameter to my JAVA_OPTS variable: -Djava.awt.headless=true
Then it works fine.