MySQL driver issue after updating jenkins - java

I have a strange problem.
I updated/upgraded jenkins from Jenkins ver. 1.638 to Jenkins ver. 2.60.1.
One of my jobs now does not work properly anymore.
Its a Maven project.
In the pom following dependency is set:
<dependency>
<groupId>mysql</groupId>
<artifactId>mysql-connector-java-p</artifactId>
<version>5.1.7</version>
<scope>compile</scope>
</dependency>
Now the strange thing is:
When i build this job with Jenkins ver. 1.638 then following driver is set in META-INF/services "com.mysql.jdbc.Driver" (java 7 used)
When i build this job with Jenkins ver. 2.60.1 then following driver is set in META-INF/services "oracle.jdbc.OracleDriver" (java 8 used and must be used, due to system requirements of Jenkins ver. 2.60.1)
I am pretty sure this has something to do with the java version, but i could not figure out the relation.
With this i already tried to force java 7 but this does not solve my problem:
<!-- <plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-toolchains-plugin</artifactId>
<version>1.1</version>
<executions>
<execution>
<goals>
<goal>toolchain</goal>
</goals>
</execution>
</executions>
<configuration>
<toolchains>
<jdk>
<version>1.7</version>
</jdk>
</toolchains>
</configuration>
</plugin> -->
Full pom.xml:
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<configuration>
<archive>
<manifest>
<addClasspath>true</addClasspath>
<mainClass>JobRunner</mainClass>
</manifest>
</archive>
<encoding>UTF-8</encoding>
</configuration>
</plugin>
<!-- <plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-toolchains-plugin</artifactId>
<version>1.1</version>
<executions>
<execution>
<goals>
<goal>toolchain</goal>
</goals>
</execution>
</executions>
<configuration>
<toolchains>
<jdk>
<version>1.7</version>
</jdk>
</toolchains>
</configuration>
</plugin> -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>2.0.2</version>
<configuration>
<source>1.6</source>
<target>1.6</target>
<encoding>UTF-8</encoding>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>
<version>2.1</version>
<configuration>
<descriptors>
<descriptor>dependencies.xml</descriptor>
</descriptors>
<finalName>test</finalName>
<outputDirectory>target</outputDirectory>
<workDirectory>target/assembly/work</workDirectory>
<archive>
<manifestFile>src/main/resources/META-INF/MANIFEST.MF</manifestFile>
</archive>
<encoding>UTF-8</encoding>
<webResources>
<resource>
<!-- this is relative to the pom.xml directory -->
<directory>src/main/resources/springConfig</directory>
</resource>
</webResources>
</configuration>
</plugin>
</plugins>
</build>
<properties>
<springVersion>4.2.6.RELEASE</springVersion>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
</properties>
<dependencies>
<dependency>
<groupId>org.testng</groupId>
<artifactId>testng</artifactId>
<version>6.9.9</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-core</artifactId>
<version>${springVersion}</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-context</artifactId>
<version>${springVersion}</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-context-support</artifactId>
<version>${springVersion}</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-web</artifactId>
<version>${springVersion}</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-aop</artifactId>
<version>${springVersion}</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-test</artifactId>
<version>${springVersion}</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-hibernate3</artifactId>
<version>2.0.8</version>
<scope>compile</scope>
<exclusions>
<exclusion>
<groupId>org.hibernate</groupId>
<artifactId>hibernate</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>hibernate</groupId>
<artifactId>hibernate</artifactId>
<version>3.3.0</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.aspectj</groupId>
<artifactId>aspectjweaver</artifactId>
<version>1.5.4</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>cglib</groupId>
<artifactId>cglib</artifactId>
<version>2.2</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>mysql</groupId>
<artifactId>mysql-connector-java-p</artifactId>
<version>5.1.7</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>ojdbc</groupId>
<artifactId>ojdbc</artifactId>
<version>11.2.0.1.0</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>com.microsoft</groupId>
<artifactId>sqljdbc</artifactId>
<version>1.2</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>commons-logging</groupId>
<artifactId>commons-logging</artifactId>
<version>1.1</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>commons-logging</groupId>
<artifactId>commons-logging-api</artifactId>
<version>1.1</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>commons-net</groupId>
<artifactId>commons-net</artifactId>
<version>2.0</version>
</dependency>
<dependency>
<groupId>log4j</groupId>
<artifactId>log4j</artifactId>
<version>1.2.15</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.springframework.batch</groupId>
<artifactId>spring-batch-core</artifactId>
<version>2.1.8.RELEASE</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>sap-jco</groupId>
<artifactId>sap-jco</artifactId>
<version>2.1.10</version>
</dependency>
<dependency>
<groupId>sap</groupId>
<artifactId>sap-bo-cecore</artifactId>
<version>12.2.1.412</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>sap</groupId>
<artifactId>sap-cesession</artifactId>
<version>12.2.1.412</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>sap</groupId>
<artifactId>sap-bo-celib</artifactId>
<version>12.2.1.412</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>sap</groupId>
<artifactId>sap-logging</artifactId>
<version>1.0</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>sap</groupId>
<artifactId>sap-corbaidl</artifactId>
<version>12.2.1.412</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>sap</groupId>
<artifactId>sap-ebus405</artifactId>
<version>11.5.8.834</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>net.sourceforge.jexcelapi</groupId>
<artifactId>jxl</artifactId>
<version>2.6.12</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.apache.ftpserver</groupId>
<artifactId>ftpserver-core</artifactId>
<version>1.0.6</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.codehaus.mojo</groupId>
<artifactId>sql-maven-plugin</artifactId>
<version>1.5</version>
</dependency>
</dependencies>
</project>

Related

Cannot access com.amazonaws.client.builder.AwsSyncClientBuilder

I try to use AwsSyncClientBuilder and receive a strange issue.
First of all, I receive a compilation error when I try to build AmazonDynamoDB client:
(Unfortunately I can't post the screenshot currently - some StackOverflow server issue)
Cannot access com.amazonaws.client.builder.AwsSyncClientBuilder on the line:
AmazonDynamoDB client = AmazonDynamoDBClientBuilder.standard().build();
(the AmazonDynamoDBClientBuilder.standard().build() is marked by red line)
the second issue that I found:
When I view the AmazonDynamoDBClientBuilder class, this class do not have access to his own annotation #Generated - he can't import javax.annotation.Generated; library (red chars)
pom.xml:
<dependencies>
<!-- https://mvnrepository.com/artifact/com.amazonaws/aws-java-sdk-dynamodb -->
<dependency>
<groupId>com.amazonaws</groupId>
<artifactId>aws-java-sdk-dynamodb</artifactId>
<version>1.12.315</version>
</dependency>
<dependency>
<groupId>com.amazonaws</groupId>
<artifactId>aws-lambda-java-core</artifactId>
<version>1.2.1</version>
</dependency>
<dependency>
<groupId>ch.qos.logback</groupId>
<artifactId>logback-classic</artifactId>
<version>1.4.3</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-core</artifactId>
<version>2.11.0</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-databind</artifactId>
<version>2.11.0</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-annotations</artifactId>
<version>2.11.0</version>
</dependency>
<dependency>
<groupId>com.amazonaws</groupId>
<artifactId>aws-lambda-java-events</artifactId>
<version>3.11.0</version>
</dependency>
<dependency>
<groupId>org.projectlombok</groupId>
<artifactId>lombok</artifactId>
<version>1.18.24</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>software.amazon.awssdk</groupId>
<artifactId>s3</artifactId>
<version>2.17.288</version>
</dependency>
<dependency>
<groupId>com.amazonaws</groupId>
<artifactId>aws-java-sdk-core</artifactId>
<version>1.12.315</version>
<scope>test</scope>
</dependency>
<!-- https://mvnrepository.com/artifact/org.testcontainers/localstack -->
<dependency>
<groupId>org.testcontainers</groupId>
<artifactId>localstack</artifactId>
<version>1.17.5</version>
<scope>test</scope>
</dependency>
<!-- https://mvnrepository.com/artifact/org.testcontainers/junit-jupiter -->
<dependency>
<groupId>org.testcontainers</groupId>
<artifactId>junit-jupiter</artifactId>
<version>1.17.5</version>
<scope>test</scope>
</dependency>
<!-- https://mvnrepository.com/artifact/org.junit.jupiter/junit-jupiter -->
<dependency>
<groupId>org.junit.jupiter</groupId>
<artifactId>junit-jupiter</artifactId>
<version>5.9.1</version>
<scope>test</scope>
</dependency>
</dependencies>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>2.22.2</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-shade-plugin</artifactId>
<version>2.3</version>
<configuration>
<createDependencyReducedPom>false</createDependencyReducedPom>
</configuration>
<executions>
<execution>
<phase>package</phase>
<goals>
<goal>shade</goal>
</goals>
<configuration>
<artifactSet>
<excludes>
<exclude>org.apache.tomcat.embed:*</exclude>
</excludes>
</artifactSet>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</build>
What happens and why I can't use this library on my project?

Error:osgi:Exception in parsing jar file for extract from jar

while trying to run app from intellij,i am getting below error:
Error:osgi: [owlapi-distribution] Exception in parsing jar file for extract from jar: C:/Users/User/Desktop/taheriDSS/pom.xml java.util.zip.ZipException: The JAR/ZIP file (C:\Users\User\Desktop\taheriDSS\pom.xml) seems corrupted, error: error in opening zip file
if i delete osgi from facets, then i encounter with a new error :
Exception in thread "main" org.semanticweb.owlapi.model.OWLOntologyFactoryNotFoundException: Could not find an appropriate factory to load ontology from ontology document:
BTW deleting .m2 repository and redownloading had no result.
pom.xml:
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
<parent>
<artifactId>owlapi-parent</artifactId>
<groupId>net.sourceforge.owlapi</groupId>
<version>5.1.11</version>
</parent>
<modelVersion>4.0.0</modelVersion>
<artifactId>owlapi-distribution</artifactId>
<packaging>bundle</packaging>
<name>OWLAPI :: Distribution</name>
<build>
<plugins>
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<version>3.2.0</version>
<extensions>true</extensions>
<configuration>
<instructions>
<Implementation-Title>${project.name}</Implementation-Title>
<Implementation-Vendor>${project.organization.name}</Implementation-Vendor>
<Implementation-Version>${project.version}.${maven.build.timestamp}</Implementation-Version>
<Bundle-SymbolicName>org.semanticweb.owl.owlapi</Bundle-SymbolicName>
<Bundle-Version>${project.version}</Bundle-Version>
<Embed-Dependency>groupId=${project.groupId};inline=true;scope=compile|runtime|provided</Embed-Dependency>
<Embed-Directory>lib</Embed-Directory>
<Embed-Transitive>true</Embed-Transitive>
<_exportcontents>!org.semanticweb.owlapi.test.*,
com.clarkparsia.*,
de.uulm.*,
org.semanticweb.owlapi.*;-split-package:=merge-first,
org.semanticweb.owlapitools.*;-split-package:=merge-first,
org.coode.*,
uk.ac.manchester.*;-split-package:=merge-first,
org.obolibrary.*;-split-package:=merge-first</_exportcontents>
<Import-Package>!sun.misc,
org.eclipse.rdf4j.*;version="[2.0,3.0)",
!javax.annotation,
!com.google.inject.internal.*;resolution:=optional,
org.apache.commons.io.*;version=2.5,
org.apache.commons.logging.*;version=1.2,
*</Import-Package>
</instructions>
</configuration>
</plugin>
<plugin>
<artifactId>maven-shade-plugin</artifactId>
<version>2.4.3</version>
<executions>
<execution>
<phase>package</phase>
<goals>
<goal>shade</goal>
</goals>
<configuration>
<artifactSet>
<includes>
<include>net.sourceforge.owlapi:owlapi-api</include>
<include>net.sourceforge.owlapi:owlapi-apibinding</include>
<include>net.sourceforge.owlapi:owlapi-impl</include>
<include>net.sourceforge.owlapi:owlapi-oboformat</include>
<include>net.sourceforge.owlapi:owlapi-parsers</include>
<include>net.sourceforge.owlapi:owlapi-rio</include>
<include>net.sourceforge.owlapi:owlapi-tools</include>
</includes>
<excludes>
<exclude>org.apache.felix:org.osgi.core</exclude>
<exclude>org.eclipse.rdf4j:*</exclude>
<exclude>com.fasterxml.jackson.core:*</exclude>
<exclude>com.github.jsonld-java:*</exclude>
<exclude>com.fasterxml.jackson.core:*</exclude>
<exclude>org.apache.httpcomponents:*</exclude>
<exclude>commons-codec:commons-codec:*</exclude>
<exclude>org.slf4j:*</exclude>
<exclude>org.semarglproject:*</exclude>
<exclude>com.github.ben-manes.caffeine:*</exclude>
<exclude>com.google.guava:*</exclude>
<exclude>com.google.inject:*</exclude>
<exclude>javax.inject:*</exclude>
<exclude>aopalliance:*</exclude>
<exclude>com.google.inject.extensions:*</exclude>
<exclude>com.google.code.findbugs:*</exclude>
<exclude>org.slf4j:slf4j-api</exclude>
<exclude>commons-io:*</exclude>
<exclude>org.tukaani:*</exclude>
<exclude>com.carrotsearch:*</exclude>
</excludes>
</artifactSet>
<transformers>
<transformer />
</transformers>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<artifactId>maven-javadoc-plugin</artifactId>
<version>2.10.4</version>
<executions>
<execution>
<id>attach-javadoc</id>
<phase>package</phase>
<goals>
<goal>jar</goal>
</goals>
<configuration>
<skip>${no-javadoc}</skip>
<show>public</show>
<includeDependencySources>true</includeDependencySources>
<dependencySourceIncludes>
<dependencySourceInclude>net.sourceforge.owlapi:owlapi-api</dependencySourceInclude>
<dependencySourceInclude>net.sourceforge.owlapi:owlapi-apibinding</dependencySourceInclude>
<dependencySourceInclude>net.sourceforge.owlapi:owlapi-parsers</dependencySourceInclude>
<dependencySourceInclude>net.sourceforge.owlapi:owlapi-tools</dependencySourceInclude>
<dependencySourceInclude>net.sourceforge.owlapi:owlapi-impl</dependencySourceInclude>
<dependencySourceInclude>net.sourceforge.owlapi:owlapi-oboformat</dependencySourceInclude>
</dependencySourceIncludes>
</configuration>
</execution>
</executions>
<configuration>
<show>public</show>
</configuration>
</plugin>
<plugin>
<artifactId>maven-assembly-plugin</artifactId>
<version>3.0.0</version>
<executions>
<execution>
<id>attach-sources</id>
<phase>package</phase>
<goals>
<goal>single</goal>
</goals>
</execution>
</executions>
<configuration>
<attach>true</attach>
<descriptors>
<descriptor>src/assembly/sources.xml</descriptor>
</descriptors>
</configuration>
</plugin>
</plugins>
</build>
<dependencies>
<dependency>
<groupId>net.sourceforge.owlapi</groupId>
<artifactId>owlapi-compatibility</artifactId>
<version>5.1.11</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-core</artifactId>
<version>2.9.9</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-databind</artifactId>
<version>2.9.9</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-annotations</artifactId>
<version>2.9.9</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-rdf-api</artifactId>
<version>0.5.0</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.tukaani</groupId>
<artifactId>xz</artifactId>
<version>1.6</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
<version>1.7.22</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>jcl-over-slf4j</artifactId>
<version>1.7.22</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.eclipse.rdf4j</groupId>
<artifactId>rdf4j-model</artifactId>
<version>2.3.2</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.eclipse.rdf4j</groupId>
<artifactId>rdf4j-rio-api</artifactId>
<version>2.3.2</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.eclipse.rdf4j</groupId>
<artifactId>rdf4j-rio-languages</artifactId>
<version>2.3.2</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.eclipse.rdf4j</groupId>
<artifactId>rdf4j-rio-datatypes</artifactId>
<version>2.3.2</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.eclipse.rdf4j</groupId>
<artifactId>rdf4j-rio-binary</artifactId>
<version>2.3.2</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.eclipse.rdf4j</groupId>
<artifactId>rdf4j-rio-n3</artifactId>
<version>2.3.2</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.eclipse.rdf4j</groupId>
<artifactId>rdf4j-rio-nquads</artifactId>
<version>2.3.2</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.eclipse.rdf4j</groupId>
<artifactId>rdf4j-rio-ntriples</artifactId>
<version>2.3.2</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.eclipse.rdf4j</groupId>
<artifactId>rdf4j-rio-rdfjson</artifactId>
<version>2.3.2</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.eclipse.rdf4j</groupId>
<artifactId>rdf4j-rio-jsonld</artifactId>
<version>2.3.2</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.eclipse.rdf4j</groupId>
<artifactId>rdf4j-rio-rdfxml</artifactId>
<version>2.3.2</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.eclipse.rdf4j</groupId>
<artifactId>rdf4j-rio-trix</artifactId>
<version>2.3.2</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.eclipse.rdf4j</groupId>
<artifactId>rdf4j-rio-turtle</artifactId>
<version>2.3.2</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.eclipse.rdf4j</groupId>
<artifactId>rdf4j-rio-trig</artifactId>
<version>2.3.2</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.eclipse.rdf4j</groupId>
<artifactId>rdf4j-util</artifactId>
<version>2.3.2</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>com.github.jsonld-java</groupId>
<artifactId>jsonld-java</artifactId>
<version>0.12.0</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>com.github.vsonnier</groupId>
<artifactId>hppcrt</artifactId>
<version>0.7.5</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.hamcrest</groupId>
<artifactId>hamcrest-core</artifactId>
<version>1.3</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.12</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.mockito</groupId>
<artifactId>mockito-core</artifactId>
<version>2.20.0</version>
<scope>test</scope>
<exclusions>
<exclusion>
<artifactId>byte-buddy</artifactId>
<groupId>net.bytebuddy</groupId>
</exclusion>
<exclusion>
<artifactId>byte-buddy-agent</artifactId>
<groupId>net.bytebuddy</groupId>
</exclusion>
<exclusion>
<artifactId>objenesis</artifactId>
<groupId>org.objenesis</groupId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>com.github.ben-manes.caffeine</groupId>
<artifactId>caffeine</artifactId>
<version>2.6.1</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>[18.0,22.0]</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>com.google.code.findbugs</groupId>
<artifactId>jsr305</artifactId>
<version>[2.0.0,4)</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-simple</artifactId>
<version>[1.7.0,1.7.26)</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>commons-io</groupId>
<artifactId>commons-io</artifactId>
<version>2.5</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>com.github.galigator.openllet</groupId>
<artifactId>openllet-owlapi</artifactId>
<version>2.6.4</version>
</dependency>
<dependency>
<groupId>com.github.galigator.openllet</groupId>
<artifactId>openllet-jena</artifactId>
<version>2.6.4</version>
</dependency>
</dependencies>
<properties>
<inherited.rdf4j.version>${rdf4j.version}</inherited.rdf4j.version>
</properties>
</project>
EDIT:Issue solved after deleting pom.xml,recreating it and restarting intellij several times!
It seems there was something wrong with intellij

The problem is not in the POM file, but in the fact IntelliJ is trying to open it as if it was a zip file. A similar issue could be reproduced with Ant, when the classpath includes a text file. Seems likely that the IDE is not going to be fixed, given that the issue linked in the comment above by #CrazyCoder is six years old.
Try and restrict the libraries in the classpath to only actual Jar files. That's the root problem.
On the other hand, you say "while trying to run app" - but owlapi-distribution is not an app, it's a library. There is no main class to run; therefore, the app you're trying to run is not shown here. We won't be able to advise further without seeing the pom for your application; the OWLAPI pom is not important here.

Exception in thread "main" java.lang.NoClassDefFoundError: org/apache/spark/sql/Dataset

While saving Data to cassandra database i.e
Line :
com.datastax.spark.connector.japi.CassandraJavaUtil.javaFunctions(metricsRDD)
.writerBuilder("a2imetrics", "performance_data_stage",
mapToRow(PerfMetricsTable.class)).saveToCassandra();
On this line i am hitting the exception
My Pom.xml is as :
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<scala.version>2.11.8</scala.version>
<scala.main.version>2.11</scala.main.version>
<spark.version>2.3.0</spark.version>
<scalatest.version>3.0.0</scalatest.version>
<connector.version>2.3.0</connector.version>
<cassandra.version>3.0</cassandra.version>
<org.apache.spark.spark-core.version>2.3.0</org.apache.spark.spark-core.version>
<junit.version>4.12</junit.version>
<maven.compiler.source>1.8</maven.compiler.source>
<maven.compiler.target>1.8</maven.compiler.target>
</properties>
<!-- Please make sure that following dependencies have versions corresponding
to the ones in your cluster. Note that spark-cassandra-connector should be
provided with '--packages' flag to spark-submit command. -->
<dependencies>
<dependency>
<groupId>org.scala-lang</groupId>
<artifactId>scala-library</artifactId>
<version>${scala.version}</version>
<!-- <scope>provided</scope> -->
</dependency>
<!--<dependency> <groupId>org.apache.spark</groupId> <artifactId>spark-core_${scala.main.version}</artifactId>
<version>${spark.version}</version> <scope>provided</scope> </dependency> -->
<dependency>
<groupId>org.apache.spark</groupId>
<artifactId>spark-core_2.11</artifactId>
<version>2.2.0</version>
</dependency>
<!-- https://mvnrepository.com/artifact/com.fasterxml.jackson.core/jackson-annotations -->
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-annotations</artifactId>
<version>2.6.5</version>
</dependency>
<dependency>
<groupId>org.apache.spark</groupId>
<artifactId>spark-sql_${scala.main.version}</artifactId>
<version>${spark.version}</version>
</dependency>
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>14.0.1</version>
</dependency>
<dependency>
<groupId>org.apache.thrift</groupId>
<artifactId>libthrift</artifactId>
<version>0.11.0</version>
</dependency>
<!-- https://mvnrepository.com/artifact/com.sun.jersey/jersey-client -->
<dependency>
<groupId>com.sun.jersey</groupId>
<artifactId>jersey-client</artifactId>
<version>1.9</version>
</dependency>
<!-- <dependency> <groupId>org.apache.spark</groupId> <artifactId>spark-hive_${scala.main.version}</artifactId>
<version>${spark.version}</version> <scope>provided</scope> </dependency> -->
<dependency>
<groupId>com.datastax.spark</groupId>
<artifactId>spark-cassandra-connector_${scala.main.version}</artifactId>
<version>${connector.version}</version>
</dependency>
<dependency>
<groupId>io.netty</groupId>
<artifactId>netty-all</artifactId>
<version>4.1.17.Final</version>
</dependency>
<!-- Test Dependencies <dependency> <groupId>com.datastax.spark</groupId>
<artifactId>spark-cassandra-connector-embedded_${scala.main.version}</artifactId>
<version>${connector.version}</version> <scope>test</scope> <exclusions>
<exclusion> <groupId>com.datastax.cassandra</groupId> <artifactId>cassandra-driver-core</artifactId>
</exclusion> </exclusions> </dependency> <dependency> <groupId>org.scalatest</groupId>
<artifactId>scalatest_${scala.main.version}</artifactId> <version>${scalatest.version}</version>
<scope>test</scope> </dependency> <dependency> <groupId>junit</groupId> <artifactId>junit</artifactId>
<version>${junit.version}</version> <scope>test</scope> </dependency> <dependency>
<groupId>org.apache.cassandra</groupId> <artifactId>cassandra-all</artifactId>
<version>${cassandra.version}</version> <scope>test</scope> <exclusions> -->
<!-- Excluded to allow for Cassandra to run embedded <exclusion> <groupId>org.slf4j</groupId>
<artifactId>log4j-over-slf4j</artifactId> </exclusion> </exclusions> </dependency>
Force Guava 18 on Test CP, Required for Cassandra -->
</dependencies>
<!-- <build> <plugins> <plugin> <groupId>net.alchim31.maven</groupId> <artifactId>scala-maven-plugin</artifactId>
<version>3.2.2</version> <executions> <execution> <phase>process-sources</phase>
<goals> <goal>compile</goal> <goal>testCompile</goal> </goals> <configuration>
<mainSourceDir>${project.build.sourceDirectory}/../scala</mainSourceDir>
</configuration> </execution> </executions> </plugin> <plugin> <groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-shade-plugin</artifactId> <version>2.4.3</version> <executions>
<execution> <phase>package</phase> <goals> <goal>shade</goal> </goals> <configuration>
</configuration> </execution> </executions> </plugin> -->
<!-- Instructions from http://www.scalatest.org/user_guide/using_the_scalatest_maven_plugin -->
<!-- disable surefire -->
<!-- <plugin> <groupId>org.apache.maven.plugins</groupId> <artifactId>maven-surefire-plugin</artifactId>
<version>2.7</version> <configuration> <skipTests>true</skipTests> </configuration>
</plugin> -->
<!-- enable scalatest -->
<!--<plugin> <groupId>org.scalatest</groupId> <artifactId>scalatest-maven-plugin</artifactId>
<version>1.0</version> <configuration> <reportsDirectory>${project.build.directory}/surefire-reports</reportsDirectory>
<junitxml>.</junitxml> <filereports>WDF TestSuite.txt</filereports> </configuration>
<executions> <execution> <id>test</id> <goals> <goal>test</goal> </goals>
</execution> </executions> </plugin> </plugins> </build> -->
<!-- <dependencies> <dependency> <groupId>commons-logging</groupId> <artifactId>commons-logging</artifactId>
<version>1.1.1</version> </dependency> <dependency> <groupId>com.datastax.spark</groupId>
<artifactId>spark-cassandra-connector_2.11</artifactId> <version>2.3.0</version>
</dependency> <dependency> <groupId>org.apache.spark</groupId> <artifactId>spark-core_2.11</artifactId>
<version>2.2.1</version> </dependency> <dependency> <groupId>junit</groupId>
<artifactId>junit</artifactId> <version>3.8.1</version> <scope>test</scope>
</dependency> <dependency> <groupId>org.apache.spark</groupId> <artifactId>spark-sql_2.11</artifactId>
<version>2.3.1</version> </dependency> <dependency> <groupId>org.apache.spark</groupId>
<artifactId>spark-streaming_2.11</artifactId> <version>2.2.1</version> </dependency>
<dependency> <groupId>com.datastax.cassandra</groupId> <artifactId>cassandra-driver-core</artifactId>
<version>3.5.0</version> </dependency> <dependency> <groupId>org.apache.thrift</groupId>
<artifactId>libthrift</artifactId> <version>0.11.0</version> </dependency>
<dependency> <groupId>log4j</groupId> <artifactId>log4j</artifactId> <version>1.2.17</version>
</dependency> </dependencies> <properties> <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<org.apache.spark.spark-core.version>2.2.1</org.apache.spark.spark-core.version>
<maven.compiler.source>1.8</maven.compiler.source> <maven.compiler.target>1.8</maven.compiler.target>
</properties> </project> -->

Error using maven tomcat7 plugin - exception with context.xml

With the following settings
<plugin>
<groupId>org.apache.tomcat.maven</groupId>
<artifactId>tomcat7-maven-plugin</artifactId>
<version>2.2</version>
<configuration>
<port>9090</port>
<path>/</path>
<contextFile>src/main/resources/config/tomcat/context.xml</contextFile>
<executions>
<execution>
<id>start-tomcat</id>
<phase>pre-integration-test</phase>
<goals>
<goal>run</goal>
</goals>
</execution>
<execution>
<id>stop-tomcat</id>
<phase>post-integration-test</phase>
<goals>
<goal>shutdown</goal>
</goals>
</execution>
</executions>
</plugin>
When I ran
mvn integration-test
I got the following error
Caused by: javax.naming.NameNotFoundException: Name [url/btoconfig] is not bound
in this Context. Unable to find [url].
I do have this resource in context.xml (src/main/resources/config/tomcat/context.xml)
<?xml version="1.0" encoding="UTF-8"?>
<Context>
<WatchedResource>WEB-INF/web.xml</WatchedResource>
<Resource name="url/btoconfig"
auth="Container"
type="java.net.URL"
maxActive="10"
initialSize="1"
factory="com.benny.naming.factory.URLFactory"
url="file:///tools/BTO/config/DEV/bto.properties" />
</Context>
I must be missing something silly, any hint would be much appreciated.
REF: application POM
<?xml version="1.0"?>
<project
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd"
xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>com.benny.oms.bto</groupId>
<artifactId>bto</artifactId>
<version>1.03.00.00</version>
</parent>
<artifactId>application</artifactId>
<name>application</name>
<url>http://maven.apache.org</url>
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
</properties>
<packaging>war</packaging>
<dependencies>
<dependency>
<groupId>xerces</groupId>
<artifactId>xercesImpl</artifactId>
</dependency>
<!-- OMS artifacts -->
<dependency>
<groupId>com.benny.oms</groupId>
<artifactId>oms-application</artifactId>
<type>war</type>
</dependency>
<dependency>
<groupId>com.benny.oms</groupId>
<artifactId>oms-application</artifactId>
<type>jar</type>
<classifier>classes</classifier>
</dependency>
<!-- End OMS artifacts -->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>com.ibm</groupId>
<artifactId>mqjms</artifactId>
<version>${mq.version}</version>
</dependency>
<dependency>
<groupId>org.seleniumhq.selenium</groupId>
<artifactId>selenium-java</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.mockito</groupId>
<artifactId>mockito-all</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>p6spy</groupId>
<artifactId>p6spy</artifactId>
</dependency>
<dependency>
<artifactId>spring-test</artifactId>
<groupId>org.springframework</groupId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>jdbc</groupId>
<artifactId>jdbc-jconn3</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>servlet-api</artifactId>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>jsp-api</artifactId>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>jstl</artifactId>
</dependency>
<dependency>
<groupId>taglibs</groupId>
<artifactId>standard</artifactId>
</dependency>
<!-- Spring -->
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-core</artifactId>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-web</artifactId>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-webmvc</artifactId>
</dependency>
<dependency>
<groupId>org.springframework.ws</groupId>
<artifactId>spring-ws-core</artifactId>
</dependency>
<!--
<dependency>
<groupId>org.apache.geronimo.specs</groupId>
<artifactId>geronimo-jms_1.1_spec</artifactId>
</dependency>
-->
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-jms</artifactId>
</dependency>
<!-- Seeing if this is the problem
As suggested by http://stackoverflow.com/questions/8218629/active-mq-helloworld-example-exception
<dependency>
<groupId>javax</groupId>
<artifactId>javaee-api</artifactId>
</dependency>
-->
<dependency>
<groupId>javax.resource</groupId>
<artifactId>connector-api</artifactId>
</dependency>
<dependency>
<groupId>org.jdom</groupId>
<artifactId>jdom</artifactId>
</dependency>
<dependency>
<groupId>xalan</groupId>
<artifactId>xalan</artifactId>
</dependency>
<dependency>
<groupId>xalan</groupId>
<artifactId>serializer</artifactId>
</dependency>
<dependency>
<groupId>org.apache.ws.commons.axiom</groupId>
<artifactId>axiom-api</artifactId>
<exclusions>
<exclusion>
<groupId>org.apache.geronimo.specs</groupId>
<artifactId>geronimo-activation_1.1_spec</artifactId>
</exclusion>
<exclusion>
<groupId>org.apache.geronimo.specs</groupId>
<artifactId>geronimo-javamail_1.4_spec</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.apache.ws.commons.axiom</groupId>
<artifactId>axiom-impl</artifactId>
<exclusions>
<exclusion>
<groupId>org.apache.geronimo.specs</groupId>
<artifactId>geronimo-activation_1.1_spec</artifactId>
</exclusion>
<exclusion>
<groupId>org.apache.geronimo.specs</groupId>
<artifactId>geronimo-javamail_1.4_spec</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>jaxen</groupId>
<artifactId>jaxen</artifactId>
<exclusions>
<exclusion>
<artifactId>maven-cobertura-plugin</artifactId>
<groupId>maven-plugins</groupId>
</exclusion>
<exclusion>
<artifactId>maven-findbugs-plugin</artifactId>
<groupId>maven-plugins</groupId>
</exclusion>
<exclusion>
<artifactId>com.ibm.icu</artifactId>
<groupId>icu4j</groupId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.apache.ws.xmlschema</groupId>
<artifactId>xmlschema-core</artifactId>
</dependency>
<dependency>
<groupId>com.sun.xml.stream</groupId>
<artifactId>sjsxp</artifactId>
</dependency>
<!-- Spring Security -->
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-core</artifactId>
</dependency>
<dependency>
<groupId>org.springframework.ws</groupId>
<artifactId>spring-xml</artifactId>
</dependency>
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-web</artifactId>
</dependency>
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-config</artifactId>
</dependency>
<dependency>
<groupId>ch.ralscha</groupId>
<artifactId>extdirectspring</artifactId>
</dependency>
<dependency>
<groupId>org.springframework.ws</groupId>
<artifactId>spring-ws-security</artifactId>
</dependency>
<dependency>
<groupId>javax.inject</groupId>
<artifactId>javax.inject</artifactId>
</dependency>
<dependency>
<groupId>benny.extjs</groupId>
<artifactId>extjs-benny-jar</artifactId>
<exclusions>
<exclusion>
<groupId>xml-apis</groupId>
<artifactId>xml-apis</artifactId>
</exclusion>
<exclusion>
<groupId>javax.xml.stream</groupId>
<artifactId>stax-api</artifactId>
</exclusion>
<exclusion>
<groupId>stax</groupId>
<artifactId>stax-api</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>sweetdev</groupId>
<artifactId>sweetdev-spring-core</artifactId>
</dependency>
<dependency>
<groupId>net.sf.dozer</groupId>
<artifactId>dozer</artifactId>
</dependency>
<dependency>
<groupId>xmlunit</groupId>
<artifactId>xmlunit</artifactId>
</dependency>
<dependency>
<groupId>com.sun.xml.stream.buffer</groupId>
<artifactId>streambuffer</artifactId>
<exclusions>
<exclusion>
<groupId>javax.activation</groupId>
<artifactId>activation</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>annogen</groupId>
<artifactId>annogen</artifactId>
</dependency>
<dependency>
<groupId>commons-fileupload</groupId>
<artifactId>commons-fileupload</artifactId>
</dependency>
<dependency>
<groupId>net.sf.ehcache</groupId>
<artifactId>ehcache-core</artifactId>
</dependency>
<dependency>
<groupId>org.json</groupId>
<artifactId>json</artifactId>
</dependency>
<dependency>
<groupId>org.milyn</groupId>
<artifactId>milyn-smooks-all</artifactId>
</dependency>
<dependency>
<groupId>javax.mail</groupId>
<artifactId>mail</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.apache.geronimo.specs</groupId>
<artifactId>geronimo-jms_1.1_spec</artifactId>
</dependency>
<dependency>
<groupId>org.apache.pdfbox</groupId>
<artifactId>pdfbox</artifactId>
</dependency>
<dependency>
<groupId>com.benny.oms.bto</groupId>
<artifactId>dao</artifactId>
</dependency>
<!--to share test code-->
<dependency>
<groupId>com.benny.oms.bto</groupId>
<artifactId>model</artifactId>
<version>${project.version}</version><!--$NO-MVN-MAN-VER$-->
<type>test-jar</type>
<scope>test</scope>
</dependency>
<dependency>
<groupId>com.benny.oms.bto</groupId>
<artifactId>interfaces</artifactId>
</dependency>
<dependency>
<groupId>commons-httpclient</groupId>
<artifactId>commons-httpclient</artifactId>
</dependency>
<dependency>
<groupId>joda-time</groupId>
<artifactId>joda-time</artifactId>
</dependency>
<dependency>
<groupId>SSO</groupId>
<artifactId>benny-SSO-Client</artifactId>
</dependency>
</dependencies>
<build>
<finalName>bto</finalName>
<plugins>
<plugin>
<groupId>org.apache.tomcat.maven</groupId>
<artifactId>tomcat7-maven-plugin</artifactId>
<version>2.2</version>
<configuration>
<port>9090</port>
<path>/</path>
<contextFile>src/main/resources/config/tomcat/context.xml</contextFile>
<executions>
<execution>
<id>start-tomcat</id>
<!-- <phase>pre-integration-test</phase> -->
<phase>generate-resources</phase>
<goals>
<goal>run</goal>
</goals>
</execution>
<execution>
<id>stop-tomcat</id>
<phase>post-integration-test</phase>
<goals>
<goal>shutdown</goal>
</goals>
</execution>
</executions>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-resources-plugin</artifactId>
<version>2.6</version>
<configuration>
<encoding>UTF-8</encoding>
<nonFilteredFileExtensions>
<nonFilteredFileExtension>xls</nonFilteredFileExtension>
</nonFilteredFileExtensions>
</configuration>
</plugin>
<plugin>
<artifactId>maven-clean-plugin</artifactId>
<version>2.5</version>
<configuration>
<filesets>
<fileset>
<directory>src/main/webapp/WEB-INF</directory>
<includes>
<include>classes/**/*</include>
<include>lib/**/*</include>
</includes>
</fileset>
</filesets>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-eclipse-plugin</artifactId>
<version>2.9</version>
<configuration>
<projectNameTemplate>[artifactId]-[version]</projectNameTemplate>
<wtpmanifest>true</wtpmanifest>
<wtpapplicationxml>true</wtpapplicationxml>
<wtpversion>2.0</wtpversion>
<manifest>${basedir}/src/main/resources/META-INF/MANIFEST.MF</manifest>
</configuration>
</plugin>
<!-- plugin allows to set variable containing all lib Container will ignore
scanning lib inside -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-dependency-plugin</artifactId>
<version>2.9-benny</version>
<executions>
<execution>
<goals>
<goal>build-classpath</goal>
</goals>
<phase>generate-resources</phase>
<!-- <goals> <goal>build-classpath</goal> </goals> -->
<configuration>
<useAbsolutePaths>false</useAbsolutePaths>
<outputProperty>was.ignorescan.archives</outputProperty>
<includeScope>runtime</includeScope>
<pathSeparator>, </pathSeparator>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-war-plugin</artifactId>
<version>2.6</version>
<configuration>
<archiveClasses>true</archiveClasses>
<attachClasses>true</attachClasses>
<dependentWarIncludes>**/common/**, **/resources/**</dependentWarIncludes>
<packagingExcludes>WEB-INF/lib/validation-api-1.0.0.GA.jar,WEB-INF/lib/geronimo-stax-api_1.0_spec-1.0.1.jar,WEB-INF/lib/geronimo-jms_1.1_spec-1.1.1.jar,WEB-INF/lib/mqjms-6.0.jar,WEB-INF/lib/xmlParserAPIs-2.6.2.jar</packagingExcludes>
<archive>
<manifest>
<addClasspath>true</addClasspath>
</manifest>
<manifestEntries>
<Implementation-Version>${project.version}</Implementation-Version>
<Ignore-Scanning-Archives>${was.ignorescan.archives}</Ignore-Scanning-Archives>
</manifestEntries>
</archive>
<webResources>
<webResource>
<directory>/src/main/webapp/WEB-INF</directory>
<includes>
<include>web.xml</include>
</includes>
<filtering>true</filtering>
<targetPath>WEB-INF</targetPath>
</webResource>
</webResources>
<overlays>
<overlay>
<groupId>com.benny.oms</groupId>
<artifactId>oms-application</artifactId>
<excludes>
<exclude>**/.xml</exclude>
<exclude>WEB-INF/lib/validation-api-1.0.0.GA.jar</exclude>
<exclude>WEB-INF/lib/geronimo-stax-api_1.0_spec-1.0.1.jar</exclude>
<exclude>WEB-INF/lib/geronimo-jms_1.1_spec-1.1.1.jar</exclude>
<exclude>WEB-INF/lib/mqjms-6.0.jar</exclude>
</excludes>
</overlay>
</overlays>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>${maven-compiler-plugin.version}</version>
<configuration>
<source>1.6</source>
<target>1.6</target>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>${maven-surefire-plugin.version}</version>
<configuration>
<excludes>
<exclude>**/*ScreenTest.java</exclude>
</excludes>
<classpathDependencyExcludes>
<!-- exclude code absent api -->
<classpathDependencyExclude>javax.faces:javax.faces-api</classpathDependencyExclude>
</classpathDependencyExcludes>
</configuration>
</plugin>
</plugins>
<resources>
<resource>
<directory>src/main/java</directory>
<includes>
<include>**/*.xml</include>
<include>**/*.properties</include>
</includes>
</resource>
<resource>
<directory>src/main/resources</directory>
<filtering>true</filtering>
<includes>
<include>**/*.xml</include>
<include>**/*.properties</include>
</includes>
</resource>
</resources>
</build>
</project>

while executing jar getting error javax.persistence.PersistenceException: No Persistence provider for EntityManager named

I have built a jar using maven. While running it I am getting exception. If I run it from eclipse main program, it works fine. But when I Build the jar and executes it, It throws Exception. How can I make it working with jar as well?
Here is my pom.xml:
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>com.staples</groupId>
<artifactId>CouponAllocationConsumer</artifactId>
<version>0.0.1-SNAPSHOT</version>
<packaging>jar</packaging>
<name>CouponAllocation</name>
<url>http://maven.apache.org</url>
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<jdk.version>1.7</jdk.version>
<spring.version>3.2.2.RELEASE</spring.version>
<spring.batch.version>2.2.0.RELEASE</spring.batch.version>
<mysql.driver.version>5.1.25</mysql.driver.version>
<junit.version>4.11</junit.version>
<maven.compiler.plugin>3.1</maven.compiler.plugin>
<maven.eclipse.plugin>2.9</maven.eclipse.plugin>
</properties>
<build>
<finalName>CouponAllocation</finalName>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-eclipse-plugin</artifactId>
<version>${maven.eclipse.plugin}</version>
<configuration>
<downloadSources>true</downloadSources>
<downloadJavadocs>false</downloadJavadocs>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>${maven.compiler.plugin}</version>
<configuration>
<source>${jdk.version}</source>
<target>${jdk.version}</target>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-dependency-plugin</artifactId>
<version>2.5.1</version>
<executions>
<execution>
<id>copy-dependencies</id>
<phase>package</phase>
<goals>
<goal>copy-dependencies</goal>
</goals>
<configuration>
<!-- exclude junit, we need runtime dependency only -->
<includeScope>runtime</includeScope>
<outputDirectory>${project.build.directory}/dependency-jars/</outputDirectory>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<configuration>
<excludes>
<exclude>**/log4j.properties</exclude>
</excludes>
<archive>
<manifest>
<addClasspath>true</addClasspath>
<mainClass>com.staples.couponallocation.kafkastorm.SpoutMainTopology</mainClass>
<classpathPrefix>./dependency-jars/</classpathPrefix>
</manifest>
</archive>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>
<version>2.2-beta-4</version>
<configuration>
<descriptorRefs>
<descriptorRef>jar-with-dependencies</descriptorRef>
</descriptorRefs>
</configuration>
<executions>
<execution>
<phase>package</phase>
<goals>
<goal>single</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</build>
<dependencies>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-validator</artifactId>
<version>4.3.0.Final</version>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-core</artifactId>
<version>4.3.10.Final</version>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-c3p0</artifactId>
<version>4.3.10.Final</version>
</dependency>
<!-- Json and GSon jar -->
<dependency>
<groupId>org.json</groupId>
<artifactId>json</artifactId>
<version>20140107</version>
</dependency>
<dependency>
<groupId>com.google.code.gson</groupId>
<artifactId>gson</artifactId>
<version>2.4</version>
</dependency>
<!-- Spring XML to/back object -->
<!-- dependency> <groupId>org.springframework</groupId> <artifactId>spring-oxm</artifactId>
<version>${spring.version}</version> </dependency -->
<!-- MySQL database driver -->
<!-- dependency> <groupId>mysql</groupId> <artifactId>mysql-connector-java</artifactId>
<version>${mysql.driver.version}</version> </dependency -->
<!-- Spring Batch dependencies -->
<!-- Spring Batch unit test -->
<!-- Storm kafka jar -->
<dependency>
<groupId>org.apache.storm</groupId>
<artifactId>storm-kafka</artifactId>
<version>0.9.3</version>
</dependency>
<dependency>
<groupId>org.apache.kafka</groupId>
<artifactId>kafka-clients</artifactId>
<version>0.9.0.0</version>
</dependency>
<dependency>
<groupId>org.apache.kafka</groupId>
<artifactId>kafka_2.9.1</artifactId>
<version>0.8.2.2</version>
<exclusions>
<exclusion>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-log4j12</artifactId>
</exclusion>
<exclusion>
<groupId>log4j</groupId>
<artifactId>log4j</artifactId>
</exclusion>
<exclusion>
<groupId>org.apache.zookeeper</groupId>
<artifactId>zookeeper</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.apache.storm</groupId>
<artifactId>storm-core</artifactId>
<version>0.9.3</version>
<exclusions>
<exclusion>
<groupId>org.apache.zookeeper</groupId>
<artifactId>zookeeper</artifactId>
</exclusion>
</exclusions>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring</artifactId>
<version>2.5.5</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-core</artifactId>
<version>4.2.3.RELEASE</version>
</dependency>
<!-- Junit -->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>${junit.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>com.oracle</groupId>
<artifactId>ojdbc14</artifactId>
<version>10.2.0.4.0</version>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-entitymanager</artifactId>
<version>4.3.10.Final</version>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-annotations</artifactId>
<version>3.5.6-Final</version>
</dependency>
<dependency>
<groupId>org.eclipse.persistence</groupId>
<artifactId>javax.persistence</artifactId>
<version>2.0.0</version>
</dependency>
<dependency>
<groupId>org.eclipse.persistence</groupId>
<artifactId>eclipselink</artifactId>
<version>2.5.0</version>
</dependency>
<dependency>
<groupId>javax.transaction</groupId>
<artifactId>jta</artifactId>
<version>1.1</version>
</dependency>
<!-- LOG4J -->
<dependency>
<groupId>log4j</groupId>
<artifactId>log4j</artifactId>
<version>1.2.17</version>
</dependency>
<dependency>
<groupId>org.apache.zookeeper</groupId>
<artifactId>zookeeper</artifactId>
<version>3.4.6</version>
<exclusions>
<exclusion>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-log4j12</artifactId>
</exclusion>
</exclusions>
</dependency>
</dependencies>

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