Develop Reference

NoSuchMethodError: com.mongodb.MongoClientSettings$Builder.uuidRepresentation

I've tried to get up spring-boot version from 2.1.1.RELEASE to 2.3.8.RELEASE and got error "Caused by: java.lang.NoSuchMethodError: com.mongodb.MongoClientSettings$Builder.uuidRepresentation(Lorg/bson/UuidRepresentation;)Lcom/mongodb/MongoClientSettings$Builder"
My application consists of several modules and one of them has a dependency on a customed 'import-export' service. This service uses Mongo db while my application uses postgree db. When I run mvn dependency:tree, I see 'mongo' is mentioned only here:
[INFO] +- ....export-import-lib-node:jar:0.2.3-springboot-2.3.5:compile
[INFO] | +- org.springframework.data:spring-data-mongodb:jar:3.0.6.RELEASE:compile
[INFO] | | +- org.springframework.data:spring-data-commons:jar:2.3.6.RELEASE:compile
[INFO] | | \- org.mongodb:mongodb-driver-core:jar:4.0.5:compile
[INFO] | | \- org.mongodb:bson:jar:4.0.5:compile
[INFO] | \- org.mongodb:mongo-java-driver:jar:3.8.2:compile
Before version changes there were:
[INFO] +- .....export-import-lib-node:jar:0.2.4:compile
[INFO] | \- org.springframework.data:spring-data-mongodb:jar:2.1.3.RELEASE:compile
[INFO] | +- org.springframework.data:spring-data-commons:jar:2.1.3.RELEASE:compile
[INFO] | \- org.mongodb:mongo-java-driver:jar:3.8.2:compile
I've tried to add dependencies
<dependency>
<groupId>org.mongodb</groupId>
<artifactId>bson</artifactId>
<version>4.4.2</version>
</dependency>
<dependency>
<groupId>org.mongodb</groupId>
<artifactId>mongodb-driver-core</artifactId>
<version>4.4.2</version>
</dependency>
<dependency>
<groupId>org.mongodb</groupId>
<artifactId>mongodb-driver-sync</artifactId>
<version>4.4.2</version>
</dependency>
but got the same error on running the application on Tomcat server.
Could you advice me what should I do to fix this error?
Thank you.
Update:
Added
#Bean
public MongoClient mongoClient() {
return MongoClients.create(MongoClientSettings.builder()
.uuidRepresentation(UuidRepresentation.JAVA_LEGACY)
.build());
}
but still have the same error " Caused by: org.springframework.beans.BeanInstantiationException: Failed to instantiate [com.mongodb.client.MongoClient]: Factory method 'mongoClient' threw exception; nested exception is java.lang.NoSuchMethodError: com.mongodb.MongoClientSettings$Builder.uuidRepresentation(Lorg/bson/UuidRepresentation;)Lcom/mongodb/MongoClientSettings$Builder;"

Try following dependencies
<dependency>
<groupId>org.mongodb</groupId>
<artifactId>mongo-java-driver</artifactId>
<version>3.12.2</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.mongodb/mongodb-driver -->
<dependency>
<groupId>org.mongodb</groupId>
<artifactId>mongodb-driver</artifactId>
<version>3.6.3</version>
<exclusions>
<exclusion>
<groupId>org.mongodb</groupId> <!-- Exclude Project-E from Project-B -->
<artifactId>bson</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.mongodb</groupId>
<artifactId>mongodb-driver-core</artifactId>
<version>3.11.0</version>
</dependency>

maven-dependency-plugin not showing test-scoped dependencies

I'm attempting to display the full tree of dependencies for a project I'm working on using the maven-dependency-plugin version 3.1.2 from the command line, but the mvn dependency:tree goal (nor any of the other goals from the maven-dependency-plugin) is not showing the test dependencies. The documentation of the plugin (https://maven.apache.org/plugins/maven-dependency-plugin/tree-mojo.html) states that all scopes are included by default, so using the -Dscope=test shouldn't be necessary (but when adding this parameter, the output doesn't change).
I've run this with a clean .m2 repository, using no settings.xml file (to ensure that all artifacts are coming directly from repo.maven.apache.org).
I'm running using maven 3.6.2 on a linux environment (CentOS 7) and using Oracle Java 1.8.0_144
Here's my POM:
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>com.sw-eval</groupId>
<artifactId>cayenne-eval</artifactId>
<version>1.0.0-SNAPSHOT</version>
<dependencies>
<dependency>
<groupId>org.apache.cayenne</groupId>
<artifactId>cayenne-server</artifactId>
<version>4.2.M2</version>
</dependency>
<dependency>
<groupId>org.apache.cayenne</groupId>
<artifactId>cayenne-di</artifactId>
<version>4.2.M2</version>
</dependency>
<dependency>
<groupId>org.apache.cayenne</groupId>
<artifactId>cayenne-dbsync</artifactId>
<version>4.2.M2</version>
</dependency>
<dependency>
<groupId>org.apache.cayenne</groupId>
<artifactId>cayenne-client</artifactId>
<version>4.2.M2</version>
</dependency>
</dependencies>
</project>
Here's the output I receive from running the command mvn dependency:tree:
[INFO] Scanning for projects...
[INFO]
[INFO] ----------------------< com.sw-eval:cayenne-eval >----------------------
[INFO] Building cayenne-eval 1.0.0-SNAPSHOT
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- maven-dependency-plugin:2.8:tree (default-cli) # cayenne-eval ---
[INFO] com.sw-eval:cayenne-eval:jar:1.0.0-SNAPSHOT
[INFO] +- org.apache.cayenne:cayenne-server:jar:4.2.M2:compile
[INFO] | \- org.slf4j:slf4j-api:jar:1.7.25:compile
[INFO] +- org.apache.cayenne:cayenne-di:jar:4.2.M2:compile
[INFO] +- org.apache.cayenne:cayenne-dbsync:jar:4.2.M2:compile
[INFO] | +- org.apache.cayenne:cayenne-project:jar:4.2.M2:compile
[INFO] | \- net.java.dev.inflector:inflector:jar:0.7.0:compile
[INFO] \- org.apache.cayenne:cayenne-client:jar:4.2.M2:compile
[INFO] +- com.caucho:hessian:jar:4.0.63:compile
[INFO] \- org.apache.cayenne:cayenne-rop-server:jar:4.2.M2:compile
[INFO] +- org.apache.cayenne:cayenne-web:jar:4.2.M2:compile
[INFO] \- org.slf4j:slf4j-simple:jar:1.7.25:compile
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 2.951 s
[INFO] Finished at: 2020-11-25T08:53:17-07:00
[INFO] ------------------------------------------------------------------------
When referring to the cayenne-server pom, however, there are many dependencies marked as test which are not shown in the output (specifically, the following are direct dependencies of cayenne-server, see https://search.maven.org/artifact/org.apache.cayenne/cayenne-server/4.2.M2/jar):
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.mockito</groupId>
<artifactId>mockito-core</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.apache.cayenne.build-tools</groupId>
<artifactId>cayenne-test-utilities</artifactId>
<version>${project.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-core</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-mock</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>com.mockrunner</groupId>
<artifactId>mockrunner-jdbc</artifactId>
<scope>test</scope>
<exclusions>
<exclusion>
<!-- this one have old Xerces dependency that clashes with JDK's one -->
<groupId>nekohtml</groupId>
<artifactId>nekohtml</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-simple</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>xmlunit</groupId>
<artifactId>xmlunit</artifactId>
<scope>test</scope>
</dependency>
So, is there something that I'm missing that needs to be enabled to show these test-scoped dependencies, and / or is this a weird artifact unique to the cayenne-server dependency?
Thanks in advance!

Dependencies of scope test are not transitive.
The test dependencies of your dependencies are not part of your dependency tree. They are ignored by Maven.

MAVEN :- Could not resolve dependencies for project

I hope some one facing the same issue to resolving the dependencies. POM.xml file mentioned below
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd"
xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
4.0.0
<parent>
<groupId>com.shopizer</groupId>
<artifactId>habbit</artifactId>
<version>2.12.0</version>
</parent>
<artifactId>habbit-core</artifactId>
<packaging>jar</packaging>
<name>habbit-core</name>
<url>http://www.shopizer.com</url>
<properties>
<coverage.lines>.00</coverage.lines>
<coverage.branches>.00</coverage.branches>
<google-client-maps-services-version>0.1.6</google-client-maps-services-version>
</properties>
<dependencies>
<!-- jpa, crud repository -->
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-data-jpa</artifactId>
</dependency>
<!-- https://mvnrepository.com/artifact/org.hibernate/hibernate-ehcache -->
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-ehcache</artifactId>
</dependency>
<!-- sm-core-model -->
<dependency>
<groupId>com.shopizer</groupId>
<artifactId>habbit-core-model</artifactId>
</dependency>
<!-- sm-core-modules -->
<dependency>
<groupId>com.shopizer</groupId>
<artifactId>habbit-core-modules</artifactId>
</dependency>
<!-- canadapost -->
<dependency>
<groupId>com.shopizer</groupId>
<artifactId>shopizer-shipping-canadapost-module</artifactId>
<version>${shopizer-canadapost.version}</version>
</dependency>
<!-- Google Map API -->
<dependency>
<groupId>com.google.maps</groupId>
<artifactId>google-maps-services</artifactId>
</dependency>
<dependency>
<groupId>org.kie</groupId>
<artifactId>kie-ci</artifactId>
<exclusions>
<exclusion>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.drools</groupId>
<artifactId>drools-decisiontables</artifactId>
</dependency>
<dependency>
<groupId>org.drools</groupId>
<artifactId>drools-core</artifactId>
</dependency>
<dependency>
<groupId>org.drools</groupId>
<artifactId>drools-compiler</artifactId>
</dependency>
<!--spring integration -->
<dependency>
<groupId>org.kie</groupId>
<artifactId>kie-spring</artifactId>
</dependency>
<!-- end rules engine -->
<!-- Infinispan -->
<dependency>
<groupId>org.infinispan</groupId>
<artifactId>infinispan-core</artifactId>
</dependency>
<dependency>
<groupId>org.infinispan</groupId>
<artifactId>infinispan-tree</artifactId>
</dependency>
<!-- https://mvnrepository.com/artifact/org.apache.commons/commons-collections4 -->
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-collections4</artifactId>
<!--<version>${commons-collections4.version}</version> -->
</dependency>
<!-- https://mvnrepository.com/artifact/commons-validator/commons-validator -->
<dependency>
<groupId>commons-validator</groupId>
<artifactId>commons-validator</artifactId>
<!--<version>${commons-validator.version}</version> -->
<exclusions>
<exclusion>
<groupId>commons-collections</groupId>
<artifactId>commons-collections</artifactId>
</exclusion>
</exclusions>
</dependency>
<!-- https://mvnrepository.com/artifact/org.freemarker/freemarker -->
<dependency>
<groupId>org.freemarker</groupId>
<artifactId>freemarker</artifactId>
</dependency>
<!-- https://mvnrepository.com/artifact/org.springframework/spring-context-support -->
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-context-support</artifactId>
</dependency>
<!-- https://mvnrepository.com/artifact/org.apache.httpcomponents/httpclient -->
<dependency>
<groupId>org.apache.httpcomponents</groupId>
<artifactId>httpclient</artifactId>
</dependency>
<!-- https://mvnrepository.com/artifact/com.amazonaws/aws-java-sdk-s3 -->
<dependency>
<groupId>com.amazonaws</groupId>
<artifactId>aws-java-sdk-s3</artifactId>
</dependency>
<!-- https://mvnrepository.com/artifact/com.amazonaws/aws-java-sdk-ses -->
<dependency>
<groupId>com.amazonaws</groupId>
<artifactId>aws-java-sdk-ses</artifactId>
</dependency>
<!-- google cloud storage -->
<dependency>
<groupId>com.google.cloud</groupId>
<artifactId>google-cloud-storage</artifactId>
<exclusions>
<exclusion>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
</exclusion>
</exclusions>
</dependency>
<!-- Payment dependencies -->
<!-- Paypal -->
<dependency>
<groupId>com.paypal.sdk</groupId>
<artifactId>merchantsdk</artifactId>
</dependency>
<!-- Stripe -->
<dependency>
<groupId>com.stripe</groupId>
<artifactId>stripe-java</artifactId>
</dependency>
<!-- Braintree -->
<dependency>
<groupId>com.braintreepayments.gateway</groupId>
<artifactId>braintree-java</artifactId>
</dependency>
<!-- Invoices -->
<!-- <dependency> <groupId>com.itextpdf</groupId> <artifactId>itextpdf</artifactId>
</dependency> <dependency> <groupId>org.jopendocument</groupId> <artifactId>jOpenDocument</artifactId>
</dependency> -->
<!-- https://mvnrepository.com/artifact/com.maxmind.geoip2/geoip2 -->
<dependency>
<groupId>com.maxmind.geoip2</groupId>
<artifactId>geoip2</artifactId>
</dependency>
<!-- google cloud storage -->
<!-- https://mvnrepository.com/artifact/com.google.guava/guava -->
<!-- Up to date for GCP storage issue -->
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
</dependency>
<!-- tests dependencies -->
<!-- http://mvnrepository.com/artifact/org.springframework.boot/spring-boot-starter-test -->
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-test</artifactId>
</dependency>
<!-- H2 DB -->
<dependency>
<groupId>com.h2database</groupId>
<artifactId>h2</artifactId>
</dependency>
<!-- Elastic search -->
<dependency>
<groupId>org.elasticsearch</groupId>
<artifactId>elasticsearch</artifactId>
</dependency>
<dependency>
<groupId>com.shopizer</groupId>
<artifactId>sm-search</artifactId>
<exclusions>
<exclusion>
<groupId>org.elasticsearch</groupId>
<artifactId>elasticsearch</artifactId>
</exclusion>
<exclusion>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
</exclusion>
</exclusions>
</dependency>
</dependencies>
when I run command mvn clean install:-
[INFO] Scanning for projects...
[INFO] Inspecting build with total of 6 modules...
[INFO] Installing Nexus Staging features:
[INFO] ... total of 6 executions of maven-deploy-plugin replaced with nexus-staging-maven-plugin
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO]
[INFO] habbit [pom]
[INFO] habbit-core-model [jar]
[INFO] habbit-core-modules [jar]
[INFO] habbit-core [jar]
[INFO] habbit-shop-model [jar]
[INFO] habbit-shop [jar]
[INFO]
[INFO] ------------------------< com.shopizer:habbit >-------------------------
[INFO] Building habbit 2.12.0 [1/6]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO]
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) # habbit ---
[INFO]
[INFO] --- jacoco-maven-plugin:0.8.3:prepare-agent (default-prepare-agent) # habbit ---
[INFO] argLine set to -javaagent:C:\\Users\\Hp\\.m2\\repository\\org\\jacoco\\org.jacoco.agent\\0.8.3\\org.jacoco.agent-0.8.3-runtime.jar=destfile=D:\\myProject\\h
abbit\\target\\jacoco.exec
[INFO]
[INFO] -------------------< com.shopizer:habbit-core-model >-------------------
[INFO] Building habbit-core-model 2.12.0 [2/6]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) # habbit-core-model ---
[INFO] Deleting D:\myProject\habbit\habbit-core-model\target
[INFO]
[INFO] --- jacoco-maven-plugin:0.8.3:prepare-agent (default-prepare-agent) # habbit-core-model ---
[INFO] argLine set to -javaagent:C:\\Users\\Hp\\.m2\\repository\\org\\jacoco\\org.jacoco.agent\\0.8.3\\org.jacoco.agent-0.8.3-runtime.jar=destfile=D:\\myProject\\h
abbit\\habbit-core-model\\target\\jacoco.exec
[INFO]
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) # habbit-core-model ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory D:\myProject\habbit\habbit-core-model\src\main\resources
[INFO] skip non existing resourceDirectory D:\myProject\habbit\habbit-core-model\src\main\resources
[INFO]
[INFO] --- maven-compiler-plugin:3.5.1:compile (default-compile) # habbit-core-model ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 182 source files to D:\myProject\habbit\habbit-core-model\target\classes
[INFO]
[INFO] ------------------< com.shopizer:habbit-core-modules >------------------
[INFO] Building habbit-core-modules 2.12.0 [3/6]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) # habbit-core-modules ---
[INFO] Deleting D:\myProject\habbit\habbit-core-modules\target
[INFO]
[INFO] --- jacoco-maven-plugin:0.8.3:prepare-agent (default-prepare-agent) # habbit-core-modules ---
[INFO] argLine set to -javaagent:C:\\Users\\Hp\\.m2\\repository\\org\\jacoco\\org.jacoco.agent\\0.8.3\\org.jacoco.agent-0.8.3-runtime.jar=destfile=D:\\myProject\\h
abbit\\habbit-core-modules\\target\\jacoco.exec
[INFO]
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) # habbit-core-modules ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory D:\myProject\habbit\habbit-core-modules\src\main\resources
[INFO] skip non existing resourceDirectory D:\myProject\habbit\habbit-core-modules\src\main\resources
[INFO]
[INFO] --- maven-compiler-plugin:3.5.1:compile (default-compile) # habbit-core-modules ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 14 source files to D:\myProject\habbit\habbit-core-modules\target\classes
[INFO]
[INFO] ----------------------< com.shopizer:habbit-core >----------------------
[INFO] Building habbit-core 2.12.0 [4/6]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for habbit 2.12.0:
[INFO]
[INFO] habbit ............................................. SUCCESS [ 2.919 s]
[INFO] habbit-core-model .................................. SUCCESS [ 14.010 s]
[INFO] habbit-core-modules ................................ SUCCESS [ 2.125 s]
[INFO] habbit-core ........................................ FAILURE [ 2.078 s]
[INFO] habbit-shop-model .................................. SKIPPED
[INFO] habbit-shop ........................................ SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 24.245 s
[INFO] Finished at: 2020-05-22T15:12:57+05:30
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal on project habbit-core: Could not resolve dependencies for project com.shopizer:habbit-core:jar:2.12.0: Failed to collect dependenci
es at com.shopizer:shopizer-shipping-canadapost-module:jar:2.11.0 -> com.shopizer:sm-core-model:jar:2.10.0: Failed to read artifact descriptor for com.shopizer:sm-
core-model:jar:2.10.0: Failure to find com.shopizer:shopizer:pom:2.10.0 in https://oss.sonatype.org/content/repositories/snapshots/ was cached in the local reposit
ory, resolution will not be reattempted until the update interval of oss-sonatype has elapsed or updates are forced -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <args> -rf :habbit-core

Remove canadapost-module from dependencies.

Spring 4.3.0.RELEASE + Hibernate 5.2.0.Final + JPA Repository

I have this Error while trying to work with Spring JPA:
Could not open JPA EntityManager for transaction; nested exception is java.lang.NoSuchMethodError: org.hibernate.Session.getFlushMode()Lorg/hibernate/FlushMode;
** Update: Full Stack trace
It works in the same configuration in diffrent project
What could be the reason?
I`m using Java 1.8 & Dynamic Web Application 3.1 (As the parallel project that works)
pom.xml:
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>Test</groupId>
<artifactId>Test</artifactId>
<version>0.0.1-SNAPSHOT</version>
<packaging>war</packaging>
<build>
<sourceDirectory>src</sourceDirectory>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.5.1</version>
<configuration>
<source>1.8</source>
<target>1.8</target>
<compilerArgument>-Xlint:all</compilerArgument>
<showWarnings>true</showWarnings>
<showDeprecation>true</showDeprecation>
<webXml>WebContent\WEB-INF\web.xml</webXml>
<failOnMissingWebXml>false</failOnMissingWebXml>
</configuration>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>exec-maven-plugin</artifactId>
<version>1.2.1</version>
<configuration>
<mainClass>org.test.int1.Main</mainClass>
</configuration>
</plugin>
</plugins>
</build>
<dependencies>
<!-- Spring -->
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-context</artifactId>
<version>4.3.0.RELEASE</version>
<exclusions>
<!-- Exclude Commons Logging in favor of SLF4j -->
<exclusion>
<groupId>commons-logging</groupId>
<artifactId>commons-logging</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-webmvc</artifactId>
<version>4.3.0.RELEASE</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-tx</artifactId>
<version>4.3.0.RELEASE</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-web</artifactId>
<version>4.3.0.RELEASE</version>
</dependency>
<dependency>
<groupId>org.springframework.data</groupId>
<artifactId>spring-data-jpa</artifactId>
<version>1.10.2.RELEASE</version>
</dependency>
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-config</artifactId>
<version>4.1.0.RELEASE</version>
</dependency>
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-web</artifactId>
<version>4.1.0.RELEASE</version>
</dependency>
<!-- Hibernate -->
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-entitymanager</artifactId>
<version>5.1.0.Final</version>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-core</artifactId>
<version>5.2.0.Final</version>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-validator</artifactId>
<version>5.3.0.Alpha1</version>
</dependency>
<!-- AspectJ -->
<dependency>
<groupId>aspectj</groupId>
<artifactId>aspectjrt</artifactId>
<version>1.5.4</version>
</dependency>
<!-- Logging -->
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
<version>1.7.21</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>jcl-over-slf4j</artifactId>
<version>1.7.21</version>
<scope>runtime</scope>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-log4j12</artifactId>
<version>1.7.21</version>
<scope>runtime</scope>
</dependency>
<dependency>
<groupId>log4j</groupId>
<artifactId>log4j</artifactId>
<version>1.2.17</version>
<exclusions>
<exclusion>
<groupId>javax.mail</groupId>
<artifactId>mail</artifactId>
</exclusion>
<exclusion>
<groupId>javax.jms</groupId>
<artifactId>jms</artifactId>
</exclusion>
<exclusion>
<groupId>com.sun.jdmk</groupId>
<artifactId>jmxtools</artifactId>
</exclusion>
<exclusion>
<groupId>com.sun.jmx</groupId>
<artifactId>jmxri</artifactId>
</exclusion>
</exclusions>
<scope>runtime</scope>
</dependency>
<!-- Apache Commons DBCP -->
<dependency>
<groupId>commons-dbcp</groupId>
<artifactId>commons-dbcp</artifactId>
<version>1.4</version>
</dependency>
<!-- Javax -->
<dependency>
<groupId>javax.transaction</groupId>
<artifactId>jta</artifactId>
<version>1.1</version>
</dependency>
<!-- Servlet -->
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>javax.servlet-api</artifactId>
<version>3.1.0</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>javax.servlet.jsp</groupId>
<artifactId>jsp-api</artifactId>
<version>2.2</version>
</dependency>
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>jstl</artifactId>
<version>1.2</version>
</dependency>
</dependencies>
</project>
Full Error:
[16/08/16 10:41:57:057 IDT] INFO web.DefaultSecurityFilterChain: Creating filter chain: org.springframework.security.web.util.matcher.AnyRequestMatcher#1, [org.springframework.security.web.context.SecurityContextPersistenceFilter#2b00cbc, org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter#1e44b04e, org.springframework.security.web.header.HeaderWriterFilter#46828666, org.springframework.security.web.csrf.CsrfFilter#7d5376a4, org.springframework.security.web.authentication.logout.LogoutFilter#7f04505e, org.springframework.security.web.authentication.UsernamePasswordAuthenticationFilter#44f95930, org.springframework.security.web.authentication.www.BasicAuthenticationFilter#161a567f, org.springframework.security.web.savedrequest.RequestCacheAwareFilter#709ae44e, org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter#2d41cca3, org.springframework.security.web.authentication.AnonymousAuthenticationFilter#23ff20e2, org.springframework.security.web.session.SessionManagementFilter#6792334c, org.springframework.security.web.access.ExceptionTranslationFilter#408d1364, org.springframework.security.web.access.intercept.FilterSecurityInterceptor#638afb02]
[16/08/16 10:41:57:057 IDT] INFO http.DefaultFilterChainValidator: Checking whether login URL '/login' is accessible with your configuration
[16/08/16 10:41:57:057 IDT] INFO startup.StartupDbDataInit: -------------------------------------------------------
[16/08/16 10:41:57:057 IDT] INFO startup.StartupDbDataInit: StartupDbDataInit Working - Starting...
[16/08/16 10:41:57:057 IDT] INFO startup.StartupDbDataInit: -------------------------------------------------------
[16/08/16 10:41:57:057 IDT] DEBUG internal.TransactionImpl: begin
[16/08/16 10:41:57:057 IDT] DEBUG internal.TransactionImpl: rolling back
[16/08/16 10:41:57:057 IDT] DEBUG internal.LogicalConnectionManagedImpl: Initiating JDBC connection release from afterTransaction
[16/08/16 10:41:57:057 IDT] DEBUG internal.LogicalConnectionManagedImpl: Initiating JDBC connection release from afterTransaction
[16/08/16 10:41:57:057 IDT] INFO startup.StartupDbDataInit: StartupDbDataInit Failed!!!!!, Details=>>> Could not open JPA EntityManager for transaction; nested exception is java.lang.NoSuchMethodError: org.hibernate.Session.getFlushMode()Lorg/hibernate/FlushMode;
[16/08/16 10:41:57:057 IDT] WARN support.XmlWebApplicationContext: Exception encountered during context initialization - cancelling refresh attempt: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'startupDbDataInit': Invocation of init method failed; nested exception is org.springframework.transaction.CannotCreateTransactionException: Could not open JPA EntityManager for transaction; nested exception is java.lang.NoSuchMethodError: org.hibernate.Session.getFlushMode()Lorg/hibernate/FlushMode;
[16/08/16 10:41:57:057 IDT] INFO jpa.LocalContainerEntityManagerFactoryBean: Closing JPA EntityManagerFactory for persistence unit 'default'
[16/08/16 10:41:57:057 IDT] DEBUG internal.SessionFactoryImpl: HHH000031: Closing
[16/08/16 10:41:57:057 IDT] DEBUG spi.CascadeStyles: External cascade style regsitration [persist : STYLE_PERSIST] overrode base registration [STYLE_PERSIST_SKIPLAZY]
[16/08/16 10:41:57:057 IDT] DEBUG internal.AbstractServiceRegistryImpl: Implicitly destroying ServiceRegistry on de-registration of all child ServiceRegistries
[16/08/16 10:41:57:057 IDT] DEBUG internal.BootstrapServiceRegistryImpl: Implicitly destroying Boot-strap registry on de-registration of all child ServiceRegistries
[16/08/16 10:41:57:057 IDT] ERROR context.ContextLoader: Context initialization failed
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'startupDbDataInit': Invocation of init method failed; nested exception is org.springframework.transaction.CannotCreateTransactionException: Could not open JPA EntityManager for transaction; nested exception is java.lang.NoSuchMethodError: org.hibernate.Session.getFlushMode()Lorg/hibernate/FlushMode;
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:136)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsBeforeInitialization(AbstractAutowireCapableBeanFactory.java:408)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1570)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:545)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:482)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:775)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:861)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:541)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:444)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:326)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:107)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4842)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5303)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:147)
at org.apache.catalina.core.StandardContext.reload(StandardContext.java:3858)
at org.apache.catalina.loader.WebappLoader.backgroundProcess(WebappLoader.java:291)
at org.apache.catalina.core.StandardContext.backgroundProcess(StandardContext.java:5660)
at org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1376)
at org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1380)
at org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1380)
at org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.run(ContainerBase.java:1348)
at java.lang.Thread.run(Unknown Source)
Caused by: org.springframework.transaction.CannotCreateTransactionException: Could not open JPA EntityManager for transaction; nested exception is java.lang.NoSuchMethodError: org.hibernate.Session.getFlushMode()Lorg/hibernate/FlushMode;
at org.springframework.orm.jpa.JpaTransactionManager.doBegin(JpaTransactionManager.java:431)
at org.springframework.transaction.support.AbstractPlatformTransactionManager.getTransaction(AbstractPlatformTransactionManager.java:373)
at org.springframework.transaction.interceptor.TransactionAspectSupport.createTransactionIfNecessary(TransactionAspectSupport.java:427)
at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:276)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:136)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.data.jpa.repository.support.CrudMethodMetadataPostProcessor$CrudMethodMetadataPopulatingMethodInterceptor.invoke(CrudMethodMetadataPostProcessor.java:133)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:92)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
at com.sun.proxy.$Proxy83.count(Unknown Source)
at com.test.startup.StartupDbDataInit.onApplicationInit(StartupDbDataInit.java:38)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleElement.invoke(InitDestroyAnnotationBeanPostProcessor.java:365)
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleMetadata.invokeInitMethods(InitDestroyAnnotationBeanPostProcessor.java:310)
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:133)
... 25 more
Caused by: java.lang.NoSuchMethodError: org.hibernate.Session.getFlushMode()Lorg/hibernate/FlushMode;
at org.springframework.orm.jpa.vendor.HibernateJpaDialect.prepareFlushMode(HibernateJpaDialect.java:187)
at org.springframework.orm.jpa.vendor.HibernateJpaDialect.beginTransaction(HibernateJpaDialect.java:173)
at org.springframework.orm.jpa.JpaTransactionManager.doBegin(JpaTransactionManager.java:380)
... 46 more
Dependency:tree
[INFO] Scanning for projects...
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Monitor 0.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[WARNING] The artifact aspectj:aspectjrt:jar:1.5.4 has been relocated to org.aspectj:aspectjrt:jar:1.5.4
[INFO]
[INFO] --- maven-dependency-plugin:2.8:tree (default-cli) # Monitor ---
[WARNING] The artifact aspectj:aspectjrt:jar:1.5.4 has been relocated to org.aspectj:aspectjrt:jar:1.5.4
[INFO] Monitor:Monitor:war:0.0.1-SNAPSHOT
[INFO] +- org.springframework:spring-context:jar:4.3.0.RELEASE:compile
[INFO] | +- org.springframework:spring-aop:jar:4.3.0.RELEASE:compile
[INFO] | +- org.springframework:spring-beans:jar:4.3.0.RELEASE:compile
[INFO] | +- org.springframework:spring-core:jar:4.3.0.RELEASE:compile
[INFO] | \- org.springframework:spring-expression:jar:4.3.0.RELEASE:compile
[INFO] +- org.springframework:spring-webmvc:jar:4.3.0.RELEASE:compile
[INFO] +- org.springframework:spring-tx:jar:4.3.0.RELEASE:compile
[INFO] +- org.springframework:spring-web:jar:4.3.0.RELEASE:compile
[INFO] +- org.springframework.data:spring-data-jpa:jar:1.10.2.RELEASE:compile
[INFO] | +- org.springframework.data:spring-data-commons:jar:1.12.2.RELEASE:compile
[INFO] | \- org.springframework:spring-orm:jar:4.2.6.RELEASE:compile
[INFO] | \- org.springframework:spring-jdbc:jar:4.2.6.RELEASE:compile
[INFO] +- org.springframework.security:spring-security-config:jar:4.1.0.RELEASE:compile
[INFO] | +- aopalliance:aopalliance:jar:1.0:compile
[INFO] | \- org.springframework.security:spring-security-core:jar:4.1.0.RELEASE:compile
[INFO] +- org.springframework.security:spring-security-web:jar:4.1.0.RELEASE:compile
[INFO] +- org.hibernate:hibernate-entitymanager:jar:5.2.2.Final:compile
[INFO] | +- org.jboss.logging:jboss-logging:jar:3.3.0.Final:compile
[INFO] | +- dom4j:dom4j:jar:1.6.1:compile
[INFO] | +- org.hibernate.common:hibernate-commons-annotations:jar:5.0.1.Final:compile
[INFO] | +- org.hibernate.javax.persistence:hibernate-jpa-2.1-api:jar:1.0.0.Final:compile
[INFO] | +- org.javassist:javassist:jar:3.20.0-GA:compile
[INFO] | \- org.apache.geronimo.specs:geronimo-jta_1.1_spec:jar:1.1.1:compile
[INFO] +- org.hibernate:hibernate-core:jar:5.2.2.Final:compile
[INFO] | +- antlr:antlr:jar:2.7.7:compile
[INFO] | +- org.jboss:jandex:jar:2.0.0.Final:compile
[INFO] | +- com.fasterxml:classmate:jar:1.3.0:compile
[INFO] | \- javax.enterprise:cdi-api:jar:1.1:compile
[INFO] | +- javax.el:el-api:jar:2.2:compile
[INFO] | +- org.jboss.spec.javax.interceptor:jboss-interceptors-api_1.1_spec:jar:1.0.0.Beta1:compile
[INFO] | +- javax.annotation:jsr250-api:jar:1.0:compile
[INFO] | \- javax.inject:javax.inject:jar:1:compile
[INFO] +- org.hibernate:hibernate-validator:jar:5.3.0.Alpha1:compile
[INFO] | \- javax.validation:validation-api:jar:1.1.0.Final:compile
[INFO] +- org.aspectj:aspectjrt:jar:1.5.4:compile
[INFO] +- org.slf4j:slf4j-api:jar:1.7.21:compile
[INFO] +- org.slf4j:jcl-over-slf4j:jar:1.7.21:runtime
[INFO] +- org.slf4j:slf4j-log4j12:jar:1.7.21:runtime
[INFO] +- log4j:log4j:jar:1.2.17:runtime
[INFO] +- commons-dbcp:commons-dbcp:jar:1.4:compile
[INFO] | \- commons-pool:commons-pool:jar:1.5.4:compile
[INFO] +- javax.transaction:jta:jar:1.1:compile
[INFO] +- javax.servlet:javax.servlet-api:jar:3.1.0:provided
[INFO] +- javax.servlet.jsp:jsp-api:jar:2.2:compile
[INFO] +- javax.servlet:jstl:jar:1.2:compile
[INFO] +- org.jsoup:jsoup:jar:1.7.2:compile
[INFO] +- javax.mail:mail:jar:1.4.7:compile
[INFO] | \- javax.activation:activation:jar:1.1:compile
[INFO] \- javax.mail:javax.mail-api:jar:1.5.5:compile
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 2.467 s
[INFO] Finished at: 2016-08-16T12:18:23+03:00
[INFO] Final Memory: 13M/245M
[INFO] ------------------------------------------------------------------------

The module hibernate-entitymanager was removed in Hibernate 5.2.0 and the functionality was moved to hibernate-core. So you can just remove the hibernate-entitymanager dependency (and while you're on it, use the latest version 5.2.2):
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-core</artifactId>
<version>5.2.2.Final</version>
</dependency>
If you still have the same error afterwards, it might be, that another dependency still depends on an older version of hibernate-entitymanager, which causes then conflicts. In this case, add the hibernate-entitymanager again with the newest version:
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-entitymanager</artifactId>
<version>5.2.2.Final</version>
</dependency>
Also since spring-data-jpa 1.10.2 depends on spring-orm 4.2.6, you should add the explicit dependency to spring-orm with the correct version:
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-orm</artifactId>
<version>4.3.0.RELEASE</version>
</dependency>

You use incompatible libs.
The API has changed in hibernate 5:
FlushModeType getFlushMode()
For users of the Hibernate native APIs, we've had to rename this
method as defined by Hibernate historically because the JPA contract
defines a method of the same name, but returning the JPA FlushModeType
rather than Hibernate's FlushMode.

The following combination works fine for me:
<properties>
<project.mysql.connector.version>5.1.30</project.mysql.connector.version>
<project.hibernate.version>5.2.2.Final</project.hibernate.version>
<project.spring.orm.version>4.3.3.RELEASE</project.spring.orm.version>
<project.spring.data.jpa.version>1.10.3.RELEASE</project.spring.data.jpa.version>
</properties>
<dependency>
<groupId>mysql</groupId>
<artifactId>mysql-connector-java</artifactId>
<version>${project.mysql.connector.version}</version>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-entitymanager</artifactId>
<version>${project.hibernate.version}</version>
</dependency>
<dependency>
<groupId>org.springframework.data</groupId>
<artifactId>spring-data-jpa</artifactId>
<version>${project.spring.data.jpa.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-orm</artifactId>
<version>${project.spring.orm.version}</version>
</dependency>
But, while using the MULTI-TENANCY (currently configured for SCHEMA), it is not able to create the tables before trying to insert data and throws exception that table is not present. I really don't want to use the sql import as that takes away all the benefit of automatic schema management.

This looks as a Jar conflict.
I am using Spring Framework 4.3.5.RELEASE version and I downgrade hibernate to hibernate-core-5.1.0.Final.
It works for me.

How to really & fully exclude a package from a jar?

Having this dependencies section in my pom.xml:
<dependencies>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>3.8.1</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.apache.cxf</groupId>
<artifactId>cxf-rt-frontend-jaxws</artifactId>
<version>2.7.1</version>
<type>jar</type>
<scope>runtime</scope>
</dependency>
<dependency>
<groupId>org.apache.cxf</groupId>
<artifactId>cxf-rt-transports-http</artifactId>
<version>2.7.1</version>
<type>jar</type>
<scope>runtime</scope>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-web</artifactId>
<version>3.0.7.RELEASE</version>
</dependency>
<dependency>
<groupId>mysql</groupId>
<artifactId>mysql-connector-java</artifactId>
<version>5.1.26</version>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-core</artifactId>
<version>4.2.6.Final</version>
</dependency>
<dependency>
<groupId>org.apache.cxf</groupId>
<artifactId>cxf-api</artifactId>
<version>2.7.1</version>
<exclusions>
<exclusion>
<groupId>org.apache.geronimo.specs</groupId>
<artifactId>geronimo-javamail_1.4_spec</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.apache.cxf</groupId>
<artifactId>cxf-rt-transports-http</artifactId>
<version>2.7.1</version>
<type>jar</type>
</dependency>
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>servlet-api</artifactId>
<version>2.5</version>
</dependency>
<dependency>
<groupId>javax.mail</groupId>
<artifactId>mail</artifactId>
<version>1.4.1</version>
</dependency>
<dependency>
<groupId>javax.activation</groupId>
<artifactId>activation</artifactId>
<version>1.1.1</version>
</dependency>
</dependencies>
I expected the geronimo-javamail_1.4_spec package to be excluded from the build and, indeed, when I run mvn dependency:tree, it is no longer listed there.
However, when running the resulting jar, the JarClassLoader still complains about javax/mail classes being hidden by the geronimo ones...
Sure enough, when I examine the jar via 7-zip, I see that geronimo-javamail_1.4_spec-1.7.1.jar is still there (comes as part of the org.apache.cxf:cxf-api:jar:2.7.1:compile package).
How do I fully exclude a package? i.e. not only remove it from the dependency tree, but also not include it at all in the resulting jar?
Adding the onejar relevant xml per the comment below:
<plugin>
<groupId>com.jolira</groupId>
<artifactId>onejar-maven-plugin</artifactId>
<version>1.4.4</version>
<executions>
<execution>
<configuration>
<mainClass>com.corp.dept.proj.myclient</mainClass>
<onejarVersion>0.97</onejarVersion>
<attachToBuild>true</attachToBuild>
<!-- Optional, default is "onejar" -->
<classifier>onejar</classifier>
</configuration>
<goals>
<goal>one-jar</goal>
</goals>
</execution>
</executions>
</plugin>
Adding the output of the mvn dependency after the scope & debug options were specified per the answer below:
C:\Users\withheld\workspace\myclient>mvn dependency:tree -Dscope=runtime -Ddebug=true
[INFO] Scanning for projects...
[INFO] Searching repository for plugin with prefix: 'dependency'.
[INFO] org.apache.maven.plugins: checking for updates from onejar-maven-plugin.googlecode.com
[INFO] org.codehaus.mojo: checking for updates from onejar-maven-plugin.googlecode.com
[INFO] ------------------------------------------------------------------------
[INFO] Building myclient
[INFO] task-segment: [dependency:tree]
[INFO] ------------------------------------------------------------------------
Downloading: http://repo1.maven.org/maven2/com/oracle/ojdbc14/14/ojdbc14-14.pom
[INFO] Unable to find resource 'com.oracle:ojdbc14:pom:14' in repository central (http://repo1.maven.org/maven2)
[INFO] [dependency:tree {execution: default-cli}]
[INFO] com.corp.dept.proj:myclient:jar:0.0.6
[INFO] +- junit:junit:jar:3.8.1:test
[INFO] +- com.oracle:ojdbc14:jar:14:compile
[INFO] +- org.apache.cxf:cxf-rt-frontend-jaxws:jar:2.7.1:runtime
[INFO] | +- xml-resolver:xml-resolver:jar:1.2:runtime
[INFO] | +- asm:asm:jar:3.3.1:runtime
[INFO] | +- org.apache.cxf:cxf-rt-bindings-soap:jar:2.7.1:runtime
[INFO] | | \- org.apache.cxf:cxf-rt-databinding-jaxb:jar:2.7.1:runtime
[INFO] | +- org.apache.cxf:cxf-rt-bindings-xml:jar:2.7.1:runtime
[INFO] | +- org.apache.cxf:cxf-rt-frontend-simple:jar:2.7.1:runtime
[INFO] | \- org.apache.cxf:cxf-rt-ws-addr:jar:2.7.1:runtime
[INFO] | \- org.apache.cxf:cxf-rt-ws-policy:jar:2.7.1:runtime
[INFO] | \- org.apache.neethi:neethi:jar:3.0.2:runtime
[INFO] +- org.apache.cxf:cxf-rt-transports-http:jar:2.7.1:compile
[INFO] | \- org.apache.cxf:cxf-rt-core:jar:2.7.1:compile
[INFO] | \- com.sun.xml.bind:jaxb-impl:jar:2.1.13:compile
[INFO] +- org.springframework:spring-web:jar:3.0.7.RELEASE:compile
[INFO] | +- aopalliance:aopalliance:jar:1.0:compile
[INFO] | +- org.springframework:spring-beans:jar:3.0.7.RELEASE:compile
[INFO] | +- org.springframework:spring-context:jar:3.0.7.RELEASE:compile
[INFO] | | +- org.springframework:spring-aop:jar:3.0.7.RELEASE:compile
[INFO] | | +- org.springframework:spring-expression:jar:3.0.7.RELEASE:compile
[INFO] | | \- org.springframework:spring-asm:jar:3.0.7.RELEASE:compile
[INFO] | \- org.springframework:spring-core:jar:3.0.7.RELEASE:compile
[INFO] | \- commons-logging:commons-logging:jar:1.1.1:compile
[INFO] +- mysql:mysql-connector-java:jar:5.1.26:compile
[INFO] +- org.hibernate:hibernate-core:jar:4.2.6.Final:compile
[INFO] | +- antlr:antlr:jar:2.7.7:compile
[INFO] | +- org.jboss.logging:jboss-logging:jar:3.1.0.GA:compile
[INFO] | +- dom4j:dom4j:jar:1.6.1:compile
[INFO] | +- org.jboss.spec.javax.transaction:jboss-transaction-api_1.1_spec:jar:1.0.1.Final:compile
[INFO] | +- org.hibernate.javax.persistence:hibernate-jpa-2.0-api:jar:1.0.1.Final:compile
[INFO] | +- org.hibernate.common:hibernate-commons-annotations:jar:4.0.2.Final:compile
[INFO] | \- org.javassist:javassist:jar:3.15.0-GA:compile
[INFO] +- org.apache.cxf:cxf-api:jar:2.7.1:compile
[INFO] | +- org.codehaus.woodstox:woodstox-core-asl:jar:4.1.4:runtime
[INFO] | | \- org.codehaus.woodstox:stax2-api:jar:3.1.1:runtime
[INFO] | +- org.apache.ws.xmlschema:xmlschema-core:jar:2.0.3:compile
[INFO] | \- wsdl4j:wsdl4j:jar:1.6.2:compile
[INFO] +- javax.servlet:servlet-api:jar:2.5:compile
[INFO] +- javax.mail:mail:jar:1.4.1:compile
[INFO] \- javax.activation:activation:jar:1.1.1:compile
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESSFUL
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 4 seconds
[INFO] Finished at: Thu Apr 24 11:22:49 EDT 2014
[INFO] Final Memory: 20M/49M
[INFO] ------------------------------------------------------------------------

The onejar plugin adds all artifacts from maven's runtime scope, as it should be.
The command mvn dependency:tree does not seem to list all runtime dependencies properly though. Could be a bug, I don't know why.
Luckily, by adding a few parameters you can have all runtime scope dependencies listed.
mvn dependency:tree -Dscope=runtime -Ddebug=true
This will show that cxf-rt-core also has geronimo-javamail as dependency. So, your solution would be to explicitly add the core jar with an exclusion to your dependencies.
<dependency>
<groupId>org.apache.cxf</groupId>
<artifactId>cxf-rt-core</artifactId>
<version>2.7.1</version>
<exclusions>
<exclusion>
<groupId>org.apache.geronimo.specs</groupId>
<artifactId>geronimo-javamail_1.4_spec</artifactId>
</exclusion>
</exclusions>
</dependency>