Cannot deploy JAX-RS application in TomEE from IntelliJ - java

I cannot deploy JAX-RS application to TomEE from IntelliJ. Actually, web application is deployed and works as expected, but IntelliJ reports:
Artifact is not deployed. Press 'Deploy' to start deployment
which makes redeploy impossible. There are no errors on console:
Connected to server
[2018-05-22 10:57:19,570] Artifact adjunkto-web:war exploded: Artifact is being deployed, please wait...
22-May-2018 10:57:19.726 INFO [http-nio-8080-exec-4] org.apache.tomee.catalina.TomcatWebAppBuilder.deployWebApps using default host: localhost
22-May-2018 10:57:19.727 INFO [http-nio-8080-exec-4] org.apache.tomee.catalina.TomcatWebAppBuilder.init ------------------------- localhost -> /
22-May-2018 10:57:20.317 INFO [http-nio-8080-exec-4] org.apache.openejb.config.ConfigurationFactory.configureApplication Configuring enterprise application: C:\software\apache-tomee-webprofile-7.0.4-adjunkto\temp\0-ROOT
22-May-2018 10:57:20.499 INFO [http-nio-8080-exec-4] org.apache.openejb.config.ConfigurationFactory.configureService Configuring Service(id=Default Managed Container, type=Container, provider-id=Default Managed Container)
22-May-2018 10:57:20.500 INFO [http-nio-8080-exec-4] org.apache.openejb.config.AutoConfig.createContainer Auto-creating a container for bean .Comp2064284523: Container(type=MANAGED, id=Default Managed Container)
22-May-2018 10:57:20.502 INFO [http-nio-8080-exec-4] org.apache.openejb.assembler.classic.Assembler.createRecipe Creating Container(id=Default Managed Container)
22-May-2018 10:57:20.520 INFO [http-nio-8080-exec-4] org.apache.openejb.core.managed.SimplePassivater.init Using directory C:\software\apache-tomee-webprofile-7.0.4-adjunkto\temp for stateful session passivation
22-May-2018 10:57:20.569 INFO [http-nio-8080-exec-4] org.apache.openejb.config.AppInfoBuilder.build Enterprise application "C:\software\apache-tomee-webprofile-7.0.4-adjunkto\temp\0-ROOT" loaded.
22-May-2018 10:57:20.569 INFO [http-nio-8080-exec-4] org.apache.openejb.assembler.classic.Assembler.createApplication Assembling app: C:\software\apache-tomee-webprofile-7.0.4-adjunkto\temp\0-ROOT
22-May-2018 10:57:20.627 INFO [http-nio-8080-exec-4] org.apache.openejb.cdi.CdiBuilder.initSingleton Existing thread singleton service in SystemInstance(): org.apache.openejb.cdi.ThreadSingletonServiceImpl#7776ab
22-May-2018 10:57:20.804 INFO [http-nio-8080-exec-4] org.apache.openejb.cdi.OpenEJBLifecycle.startApplication OpenWebBeans Container is starting...
22-May-2018 10:57:20.815 INFO [http-nio-8080-exec-4] org.apache.webbeans.plugins.PluginLoader.startUp Adding OpenWebBeansPlugin : [CdiPlugin]
22-May-2018 10:57:20.828 INFO [http-nio-8080-exec-4] org.apache.openejb.cdi.CdiScanner.handleBda Using annotated mode for jar:file:/C:/software/apache-tomee-webprofile-7.0.4-adjunkto/temp/0-ROOT/WEB-INF/lib/adjunkto-domain-1.0-SNAPSHOT.jar!/META-INF/beans.xml looking all classes to find CDI beans, maybe think to add a beans.xml if not there or add the jar to exclusions.list
22-May-2018 10:57:21.329 INFO [http-nio-8080-exec-4] org.apache.webbeans.config.BeansDeployer.validateInjectionPoints All injection points were validated successfully.
22-May-2018 10:57:21.333 INFO [http-nio-8080-exec-4] org.apache.openejb.cdi.OpenEJBLifecycle.startApplication OpenWebBeans Container has started, it took 528 ms.
22-May-2018 10:57:21.340 INFO [http-nio-8080-exec-4] org.apache.openejb.assembler.classic.Assembler.createApplication Deployed Application(path=C:\software\apache-tomee-webprofile-7.0.4-adjunkto\temp\0-ROOT)
22-May-2018 10:57:21.492 INFO [http-nio-8080-exec-4] sun.reflect.DelegatingMethodAccessorImpl.invoke At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
22-May-2018 10:57:21.848 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication Using readers:
22-May-2018 10:57:21.849 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication org.apache.cxf.jaxrs.provider.PrimitiveTextProvider#71670710
22-May-2018 10:57:21.849 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication org.apache.cxf.jaxrs.provider.FormEncodingProvider#143be198
22-May-2018 10:57:21.849 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication org.apache.cxf.jaxrs.provider.MultipartProvider#657973c7
22-May-2018 10:57:21.849 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication org.apache.cxf.jaxrs.provider.SourceProvider#46e83b9c
22-May-2018 10:57:21.850 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication org.apache.cxf.jaxrs.provider.JAXBElementTypedProvider#c685959
22-May-2018 10:57:21.850 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication org.apache.cxf.jaxrs.provider.JAXBElementProvider#47145e6d
22-May-2018 10:57:21.850 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication org.apache.openejb.server.cxf.rs.johnzon.TomEEJohnzonProvider#457c1eac
22-May-2018 10:57:21.850 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication org.apache.openejb.server.cxf.rs.johnzon.TomEEJsonpProvider#66a30e49
22-May-2018 10:57:21.851 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication org.apache.cxf.jaxrs.provider.StringTextProvider#74a4930b
22-May-2018 10:57:21.851 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication org.apache.cxf.jaxrs.provider.BinaryDataProvider#3db25508
22-May-2018 10:57:21.851 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication org.apache.cxf.jaxrs.provider.DataSourceProvider#181eb56c
22-May-2018 10:57:21.851 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication Using writers:
22-May-2018 10:57:21.851 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication org.apache.johnzon.jaxrs.WadlDocumentMessageBodyWriter#66313160
22-May-2018 10:57:21.852 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication org.apache.cxf.jaxrs.provider.StringTextProvider#74a4930b
22-May-2018 10:57:21.852 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication org.apache.cxf.jaxrs.provider.JAXBElementTypedProvider#c685959
22-May-2018 10:57:21.852 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication org.apache.cxf.jaxrs.provider.PrimitiveTextProvider#71670710
22-May-2018 10:57:21.853 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication org.apache.cxf.jaxrs.provider.FormEncodingProvider#143be198
22-May-2018 10:57:21.853 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication org.apache.cxf.jaxrs.provider.MultipartProvider#657973c7
22-May-2018 10:57:21.853 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication org.apache.cxf.jaxrs.provider.SourceProvider#46e83b9c
22-May-2018 10:57:21.853 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication org.apache.cxf.jaxrs.provider.JAXBElementProvider#47145e6d
22-May-2018 10:57:21.853 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication org.apache.openejb.server.cxf.rs.johnzon.TomEEJohnzonProvider#457c1eac
22-May-2018 10:57:21.854 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication org.apache.openejb.server.cxf.rs.johnzon.TomEEJsonpProvider#66a30e49
22-May-2018 10:57:21.854 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication org.apache.cxf.jaxrs.provider.BinaryDataProvider#3db25508
22-May-2018 10:57:21.854 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication org.apache.cxf.jaxrs.provider.DataSourceProvider#181eb56c
22-May-2018 10:57:21.854 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication Using exception mappers:
22-May-2018 10:57:21.854 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication org.apache.cxf.jaxrs.impl.WebApplicationExceptionMapper#487a3473
22-May-2018 10:57:21.855 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication org.apache.openejb.server.cxf.rs.EJBExceptionMapper#5093e1dd
22-May-2018 10:57:21.855 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.deployApplication org.apache.cxf.jaxrs.validation.ValidationExceptionMapper#6618867
22-May-2018 10:57:21.857 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.logEndpoints REST Application: http://localhost:8080/ -> cz.valvera.adjunkto.web.AdjunktoApplication#70a52015
22-May-2018 10:57:21.860 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.logEndpoints Service URI: http://localhost:8080/ -> Pojo cz.valvera.adjunkto.web.RootResource
22-May-2018 10:57:21.860 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.logEndpoints GET http://localhost:8080/ -> String index()
22-May-2018 10:57:21.860 INFO [http-nio-8080-exec-4] org.apache.openejb.server.cxf.rs.CxfRsHttpListener.logEndpoints POST http://localhost:8080/ -> String post(JsonObject)
[2018-05-22 10:57:21,936] Artifact adjunkto-web:war exploded: Artifact is not deployed. Press 'Deploy' to start deployment
22-May-2018 10:57:28.566 INFO [localhost-startStop-1] sun.reflect.DelegatingMethodAccessorImpl.invoke Deploying web application directory [C:\software\apache-tomee-webprofile-7.0.4-adjunkto\webapps\manager]
22-May-2018 10:57:28.571 INFO [localhost-startStop-1] org.apache.tomee.catalina.TomcatWebAppBuilder.init ------------------------- localhost -> /manager
22-May-2018 10:57:28.654 INFO [localhost-startStop-1] org.apache.openejb.config.ConfigurationFactory.configureApplication Configuring enterprise application: C:\software\apache-tomee-webprofile-7.0.4-adjunkto\webapps\manager
22-May-2018 10:57:28.658 INFO [localhost-startStop-1] org.apache.openejb.config.AppInfoBuilder.build Enterprise application "C:\software\apache-tomee-webprofile-7.0.4-adjunkto\webapps\manager" loaded.
22-May-2018 10:57:28.658 INFO [localhost-startStop-1] org.apache.openejb.assembler.classic.Assembler.createApplication Assembling app: C:\software\apache-tomee-webprofile-7.0.4-adjunkto\webapps\manager
22-May-2018 10:57:28.664 INFO [localhost-startStop-1] org.apache.tomee.catalina.TomcatWebAppBuilder.deployWebApps using context file C:\software\apache-tomee-webprofile-7.0.4-adjunkto\webapps\manager\META-INF\context.xml
22-May-2018 10:57:28.664 INFO [localhost-startStop-1] org.apache.openejb.assembler.classic.Assembler.createApplication Deployed Application(path=C:\software\apache-tomee-webprofile-7.0.4-adjunkto\webapps\manager)
22-May-2018 10:57:28.688 INFO [localhost-startStop-1] sun.reflect.DelegatingMethodAccessorImpl.invoke At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
22-May-2018 10:57:28.708 INFO [localhost-startStop-1] sun.reflect.DelegatingMethodAccessorImpl.invoke Deployment of web application directory [C:\software\apache-tomee-webprofile-7.0.4-adjunkto\webapps\manager] has finished in [142] ms
I found these messages in IDE logs:
2018-05-22 17:16:07,549 [ 428383] INFO - ij.compiler.impl.CompileDriver - COMPILATION STARTED (BUILD PROCESS)
2018-05-22 17:16:07,550 [ 428384] INFO - j.compiler.server.BuildManager - Using preloaded build process to compile C:\vyvoj\adjunkto
2018-05-22 17:16:07,719 [ 428553] INFO - lij.compiler.impl.CompilerUtil - COMPILATION FINISHED (BUILD PROCESS); Errors: 0; warnings: 0 took 174 ms: 0 min 0sec
2018-05-22 17:16:07,720 [ 428554] INFO - CompilerBackwardReferenceIndex - backward reference index version differ due to: class java.io.FileNotFoundException
2018-05-22 17:16:07,720 [ 428554] INFO - s.CompilerReferenceServiceImpl - backward reference index reader doesn't exist
2018-05-22 17:16:07,916 [ 428750] INFO - j.compiler.server.BuildManager - BUILDER_PROCESS [stdout]: Build process started. Classpath: C:/Program Files/JetBrains/IntelliJ IDEA 2018.1.4/lib/jps-launcher.jar;C:/Program Files/Java/jdk1.8.0_162/lib/tools.jar;C:/Program Files/JetBrains/IntelliJ IDEA 2018.1.4/lib/optimizedFileManager.jar
2018-05-22 17:16:07,937 [ 428771] INFO - j.compiler.server.BuildManager - BUILDER_PROCESS [stderr]: SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
2018-05-22 17:16:07,937 [ 428771] INFO - j.compiler.server.BuildManager - BUILDER_PROCESS [stderr]: SLF4J: Defaulting to no-operation (NOP) logger implementation
2018-05-22 17:16:07,937 [ 428771] INFO - j.compiler.server.BuildManager - BUILDER_PROCESS [stderr]: SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
I deleted ~/.IntelliJIdea2018.1 directory and reinstalled IntelliJ, but it didn't change anything. Maybe these messages are not even related to my problem.
Using /manager application, I see that there are three applications deployed:
/
/manager
/tomee
In IntelliJ, I have "Application context" set to "/". I tried changing "Application context" and it changed context path in deployed application, but original problem remained.
I'm using IntelliJ 2018.1.4 and TomEE 7.0.4. What can be wrong?

Related

How to deploy a camel java DSL servlet on Tomcat server?

I have found several examples of camel servlet for tomcat server using spring DSL, I want to use Java DSL and create a RouteBuilder as shown below. This servlet works as expected on Jetty when I run using mvn jetty:run command, but doesn't work with tomcat server.
import org.apache.camel.Exchange;
import org.apache.camel.Processor;
import org.apache.camel.builder.RouteBuilder;
public class DefaultRouteBuilder extends RouteBuilder {
#Override
public void configure() throws Exception {
System.out.println("DefaultRouter");
from("servlet:hello?matchOnUriPrefix=true").process(new Processor() {
public void process(Exchange exchange) throws Exception {
String contentType = exchange.getIn().getHeader(Exchange.CONTENT_TYPE, String.class);
String path = exchange.getIn().getHeader(Exchange.HTTP_URI, String.class);
path = path.substring(path.lastIndexOf("/"));
exchange.getOut().setHeader(Exchange.CONTENT_TYPE, contentType + "; charset=UTF-8");
exchange.getOut().setHeader("PATH", path);
exchange.getOut().setBody("<b>Hello World</b>");
}
});
}
}
As per my understanding my web.xml looks like this
<?xml version="1.0" encoding="ISO-8859-1"?>
<webapp>
<display-name>camel-servlet</display-name>
<context-param>
<param-name>name</param-name>
<param-value>MyCamel</param-value>
</context-param>
<context-param>
<param-name>routeBuilder-MyRoute</param-name>
<param-value>org.apache.camel.community.so.servletlistener.DefaultRouteBuilder</param-value>
</context-param>
<listener>
<listener-class>org.apache.camel.component.servletlistener.JndiCamelServletContextListener</listener-class>
</listener>
<servlet>
<servlet-name>CamelServlet</servlet-name>
<servlet-class>org.apache.camel.component.servlet.CamelHttpTransportServlet</servlet-class>
<load-on-startup>1</load-on-startup>
</servlet>
<servlet-mapping>
<servlet-name>CamelServlet</servlet-name>
<url-pattern>/camel/*</url-pattern>
</servlet-mapping>
</webapp>
Edit:
Logs from mvn jetty:run command -
[INFO] Scanning elapsed time=1409ms
[INFO] DefaultSessionIdManager workerName=node0
[INFO] No SessionScavenger set, using defaults
[INFO] node0 Scavenging every 660000ms
2022-07-19 11:15:39,454 [main ] INFO CamelServletContextListener - CamelContextServletListener initializing ...
DefaultRouter
2022-07-19 11:15:39,797 [main ] INFO ServletCamelContext - Apache Camel 2.25.0 (CamelContext: MyCamel) is starting
2022-07-19 11:15:39,804 [main ] INFO ManagedManagementStrategy - JMX is enabled
2022-07-19 11:15:40,094 [main ] INFO DefaultTypeConverter - Type converters loaded (core: 195, classpath: 9)
2022-07-19 11:15:40,233 [main ] INFO ServletCamelContext - StreamCaching is not in use. If using streams then its recommended to enable stream caching. See more details at http://camel.apache.org/stream-caching.html
2022-07-19 11:15:40,272 [main ] INFO ServletCamelContext - Route: route1 started and consuming from: servlet:/hello?matchOnUriPrefix=true
2022-07-19 11:15:40,274 [main ] INFO ServletCamelContext - Total 1 routes, of which 1 are started
2022-07-19 11:15:40,276 [main ] INFO ServletCamelContext - Apache Camel 2.25.0 (CamelContext: MyCamel) started in 0.483 seconds
2022-07-19 11:15:40,277 [main ] INFO CamelServletContextListener - CamelContextServletListener initialized
2022-07-19 11:15:40,316 [main ] INFO CamelHttpTransportServlet - Initialized CamelHttpTransportServlet[name=CamelServlet, contextPath=/camel-example-servlet]
[INFO] Started o.e.j.m.p.JettyWebAppContext#2764c546{Camel Servlet Example,/camel-example-servlet,file:///C:/Users/rrdoshi/Downloads/camel-example-servlet/src/main/webapp/,AVAILABLE}{file:///C:/Users/rrdoshi/Downloads/camel-example-servlet/src/main/webapp/}
[INFO] Started ServerConnector#2b73bd6b{HTTP/1.1,[http/1.1]}{0.0.0.0:8080}
[INFO] Started #8097ms
[INFO] Started Jetty Server
For tomcat deployment, I am placing the war file in tomcat webapps directory and executing startup.bat
19-Jul-2022 11:21:21.403 INFO [main] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
19-Jul-2022 11:21:21.576 WARNING [main] org.apache.catalina.util.SessionIdGeneratorBase.createSecureRandom Creation of SecureRandom instance for session ID generation using [SHA1PRNG] took [146] milliseconds.
19-Jul-2022 11:21:21.596 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [C:\Users\rrdoshi\Downloads\apache-tomcat-9.0.64-windows-x64\apache-tomcat-9.0.64\webapps\ApacheCamelDemoServlet]
19-Jul-2022 11:21:21.645 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [C:\Users\rrdoshi\Downloads\apache-tomcat-9.0.64-windows-x64\apache-tomcat-9.0.64\webapps\ApacheCamelDemoServlet] has finished in [49] ms
19-Jul-2022 11:21:21.646 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [C:\Users\rrdoshi\Downloads\apache-tomcat-9.0.64-windows-x64\apache-tomcat-9.0.64\webapps\docs]
19-Jul-2022 11:21:21.671 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [C:\Users\rrdoshi\Downloads\apache-tomcat-9.0.64-windows-x64\apache-tomcat-9.0.64\webapps\docs] has finished in [25] ms
19-Jul-2022 11:21:21.672 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [C:\Users\rrdoshi\Downloads\apache-tomcat-9.0.64-windows-x64\apache-tomcat-9.0.64\webapps\examples]
19-Jul-2022 11:21:22.097 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [C:\Users\rrdoshi\Downloads\apache-tomcat-9.0.64-windows-x64\apache-tomcat-9.0.64\webapps\examples] has finished in [425] ms
19-Jul-2022 11:21:22.099 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [C:\Users\rrdoshi\Downloads\apache-tomcat-9.0.64-windows-x64\apache-tomcat-9.0.64\webapps\host-manager]
19-Jul-2022 11:21:22.135 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [C:\Users\rrdoshi\Downloads\apache-tomcat-9.0.64-windows-x64\apache-tomcat-9.0.64\webapps\host-manager] has finished in [36] ms
19-Jul-2022 11:21:22.136 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [C:\Users\rrdoshi\Downloads\apache-tomcat-9.0.64-windows-x64\apache-tomcat-9.0.64\webapps\manager]
19-Jul-2022 11:21:22.175 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [C:\Users\rrdoshi\Downloads\apache-tomcat-9.0.64-windows-x64\apache-tomcat-9.0.64\webapps\manager] has finished in [38] ms
19-Jul-2022 11:21:22.175 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [C:\Users\rrdoshi\Downloads\apache-tomcat-9.0.64-windows-x64\apache-tomcat-9.0.64\webapps\ROOT]
19-Jul-2022 11:21:22.202 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [C:\Users\rrdoshi\Downloads\apache-tomcat-9.0.64-windows-x64\apache-tomcat-9.0.64\webapps\ROOT] has finished in [26] ms
19-Jul-2022 11:21:22.205 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["http-nio-8088"]
19-Jul-2022 11:21:22.224 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in [2721] milliseconds
access logs
127.0.0.1 - - [19/Jul/2022:11:23:51 +0530] "GET /camel-servlet/ HTTP/1.1" 200 1675
127.0.0.1 - - [19/Jul/2022:11:24:01 +0530] "GET /camel-servlet/camel/hello HTTP/1.1" 404 784
localhost logs
19-Jul-2022 11:21:22.085 INFO [main] org.apache.catalina.core.ApplicationContext.log ContextListener: contextInitialized()
19-Jul-2022 11:21:22.085 INFO [main] org.apache.catalina.core.ApplicationContext.log SessionListener: contextInitialized()
19-Jul-2022 11:21:22.087 INFO [main] org.apache.catalina.core.ApplicationContext.log ContextListener: attributeAdded('StockTicker', 'async.Stockticker#68ab0936')
The WAR file is getting deployed but there are no error logs. There are no logs regarding camelContext starting up.

RestEasy Scanners stopping Tomcat Application

problem:
Hello folks after migrating from log4j 1.x version to log4j2.17.1 directly, my RestEasy scanners in web.xml file then they are breaking the tomcat application, Here are the logs attached, if I set them to false in web.xml application gets started but api's are not responding, getting 404 error.
I'am stuck on it for a week, please any help would be appreciated,
LOGS:
07-Jan-2022 17:20:32.387 INFO [RMI TCP Connection(3)-127.0.0.1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
[DATETIME = 2022-01-07 17:20:33] [CLASS = Logger] [METHOD = traceSimpleMessage] :: Loggerm
[DATETIME = 2022-01-07 17:20:33] [CLASS = Logger] [METHOD = traceOut] :: Loggerm
[DATETIME = 2022-01-07 17:20:33] [CLASS = Logger] [METHOD = traceOut] :: Loggerm
[DATETIME = 2022-01-07 17:20:33] [CLASS = com.zaxxer.hikari.HikariDataSource] [METHOD = <init>] :: com.zaxxer.hikari.HikariDataSourcem
[DATETIME = 2022-01-07 17:20:33] [CLASS = com.zaxxer.hikari.HikariDataSource] [METHOD = <init>] :: com.zaxxer.hikari.HikariDataSourcem
[DATETIME = 2022-01-07 17:20:33] [CLASS = Logger] [METHOD = traceOut] :: Loggerm
[DATETIME = 2022-01-07 17:20:33] [CLASS = Logger] [METHOD = traceOut] :: Loggerm
[DATETIME = 2022-01-07 17:20:33] [CLASS = com.zaxxer.hikari.HikariDataSource] [METHOD = <init>] :: com.zaxxer.hikari.HikariDataSourcem
[DATETIME = 2022-01-07 17:20:34] [CLASS = com.zaxxer.hikari.HikariDataSource] [METHOD = <init>] :: com.zaxxer.hikari.HikariDataSourcem
07-Jan-2022 17:20:34.117 SEVERE [RMI TCP Connection(3)-127.0.0.1] org.apache.catalina.core.StandardContext.startInternal One or more listeners failed to start. Full details will be found in the appropriate container log file
07-Jan-2022 17:20:34.118 SEVERE [RMI TCP Connection(3)-127.0.0.1] org.apache.catalina.core.StandardContext.startInternal Context [/] startup failed due to previous errors
07-Jan-2022 17:20:34.126 WARNING [RMI TCP Connection(3)-127.0.0.1] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application [] registered the JDBC driver [com.microsoft.sqlserver.jdbc.SQLServerDriver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
07-Jan-2022 17:20:34.127 WARNING [RMI TCP Connection(3)-127.0.0.1] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [] appears to have started a thread named [mssql-jdbc-TimeoutTimer-1] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
sun.misc.Unsafe.park(Native Method)
java.util.concurrent.locks.LockSupport.parkNanos(LockSupport.java:215)
java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460)
java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:362)
java.util.concurrent.SynchronousQueue.poll(SynchronousQueue.java:941)
java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1073)
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1134)
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
java.lang.Thread.run(Thread.java:748)
[2022-01-07 05:20:34,143] Artifact war exploded: Error during artifact deployment. See server log for details.
07-Jan-2022 17:20:39.439 INFO [Catalina-utility-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [C:\Program Files\Apache Software Foundation\apache-tomcat-9.0.43\webapps\manager]
07-Jan-2022 17:20:39.597 INFO [Catalina-utility-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
07-Jan-2022 17:20:39.627 INFO [Catalina-utility-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [C:\Program Files\Apache Software Foundation\apache-tomcat-9.0.43\webapps\manager] has finished in [188] ms

Error Handler java.lang.ClassNotFoundException

I have an error to start tomcat-7.0.64 on my VM Red-Hat 6.5 64bit
Using CATALINA_BASE: /opt/OSSM/3pps/tomcat
Using CATALINA_HOME: /opt/OSSM/3pps/tomcat
Using CATALINA_TMPDIR: /opt/OSSM/3pps/tomcat/temp
Using JRE_HOME:/usr/lib/jvm/java-1.7.0-openjdk-1.7.0.91-2.6.2.3.el7.x86_64/jre
Using CLASSPATH:/opt/OSSM/3pps/tomcat/bin/jdk_logging.jar:/opt/OSSM/3pps/tomcat/bin/bootstrap.jar:/opt/OSSM/3pps/tomcat/bin/tomcat-juli.jar
The tomcat_start.log have this logs:
Handler error
java.lang.ClassNotFoundException: org.apache.juli.FileHandler
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1858)
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1709)
at org.apache.juli.ClassLoaderLogManager.readConfiguration(ClassLoaderLogManager.java:560)
at org.apache.juli.ClassLoaderLogManager.readConfiguration(ClassLoaderLogManager.java:503)
at org.apache.juli.ClassLoaderLogManager$2.run(ClassLoaderLogManager.java:400)
at org.apache.juli.ClassLoaderLogManager$2.run(ClassLoaderLogManager.java:396)
at java.security.AccessController.doPrivileged(Native Method)
at org.apache.juli.ClassLoaderLogManager.getClassLoaderInfo(ClassLoaderLogManager.java:396)
at org.apache.juli.ClassLoaderLogManager.findProperty(ClassLoaderLogManager.java:280)
at org.apache.juli.ClassLoaderLogManager.getProperty(ClassLoaderLogManager.java:266)
at java.util.logging.LogManager.getLevelProperty(LogManager.java:1341)
at java.util.logging.LogManager$LoggerContext.addLocalLogger(LogManager.java:651)
at java.util.logging.LogManager$LoggerContext.addLocalLogger(LogManager.java:608)
at java.util.logging.LogManager$SystemLoggerContext.demandLogger(LogManager.java:771)
at java.util.logging.LogManager.demandSystemLogger(LogManager.java:460)
at java.util.logging.Logger.getPlatformLogger(Logger.java:473)
at java.util.logging.LoggingProxyImpl.getLogger(LoggingProxyImpl.java:41)
at sun.util.logging.LoggingSupport.getLogger(LoggingSupport.java:100)
at sun.util.logging.PlatformLogger$JavaLoggerProxy.<init>(PlatformLogger.java:639)
at sun.util.logging.PlatformLogger$JavaLoggerProxy.<init>(PlatformLogger.java:634)
at sun.util.logging.PlatformLogger.<init>(PlatformLogger.java:243)
at sun.util.logging.PlatformLogger.getLogger(PlatformLogger.java:202)
at sun.awt.X11GraphicsEnvironment.<clinit>(X11GraphicsEnvironment.java:68)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:195)
at java.awt.GraphicsEnvironment.createGE(GraphicsEnvironment.java:102)
at java.awt.GraphicsEnvironment.getLocalGraphicsEnvironment(GraphicsEnvironment.java:81)
at java.awt.image.BufferedImage.createGraphics(BufferedImage.java:1182)
at com.tomsawyer.graphicaldrawing.ui.composite.evaluator.TSServerGraphObjectEvaluator.<clinit>(SourceFile:866)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:195)
at com.tomsawyer.util.evaluator.TSFunctionsLoader.readFunctionDefinitions(SourceFile:200)
at com.tomsawyer.util.evaluator.TSFunctionsLoader.readExtensions(SourceFile:93)
at com.tomsawyer.util.evaluator.TSFunctionsLoader.loadFunctions(SourceFile:67)
at com.tomsawyer.graphicaldrawing.ui.composite.evaluator.TSServerEvaluatorSetup.setup(SourceFile:53)
at com.tomsawyer.visualization.gwt.server.bootstrap.TSServletContainerBootstrap.evaluatorSetup(SourceFile:120)
at com.tomsawyer.visualization.gwt.server.bootstrap.TSServletContainerBootstrap.<init>(SourceFile:37)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at java.lang.Class.newInstance(Class.java:383)
at org.apache.catalina.core.DefaultInstanceManager.newInstance(DefaultInstanceManager.java:116)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4919)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5517)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:901)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:877)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:652)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1095)
at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1930)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)
at java.util.concurrent.FutureTask.run(FutureTask.java:262)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:745)
SLF4J: Class path contains multiple SLF4J bindings.
SLF4J: Found binding in [jar:file:/opt/OSSM/lib/logback-classic-1.1.9.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: Found binding in [jar:file:/opt/OSSM/3pps/apache-tomcat-7.0.64/webapps/topology_maps/WEB-INF/lib/logback-classic-1.1.2.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation.
SLF4J: Actual binding is of type [ch.qos.logback.classic.util.ContextSelectorStaticBinder]
15:18:26.539 [localhost-startStop-1] DEBUG c.h.n.o.t.ui.licensing.LicenseUtil - Initializing TS License Manager
15:18:26.542 [localhost-startStop-1] DEBUG c.h.n.o.t.ui.licensing.LicenseUtil - Licensing user.name=root
15:18:26.547 [localhost-startStop-1] INFO c.h.n.o.t.ui.dao.DataUtil - DataUtil - OSSM_DATA=/var/opt/OSSM
15:18:26.548 [localhost-startStop-1] INFO c.h.n.o.t.ui.dao.DataUtil - DataUtil - OSSM_HOME=/opt/OSSM
15:18:26.548 [localhost-startStop-1] INFO c.h.n.o.t.ui.dao.DataUtil - DataUtil - Image Library=/var/opt/OSSM/topology_maps/images/
15:18:26.548 [localhost-startStop-1] INFO c.h.n.o.t.ui.dao.DataUtil - DataUtil - Image Library=/var/opt/OSSM/topology_maps/backgrounds/
15:18:26.548 [localhost-startStop-1] INFO c.h.n.o.t.ui.dao.DataUtil - DataUtil - Default Image=_default_
15:18:26.548 [localhost-startStop-1] INFO c.h.n.o.t.ui.dao.DataUtil - DataUtil - WebApps Dir=/opt/OSSM/3pps/tomcat/webapps/
15:18:26.548 [localhost-startStop-1] INFO c.h.n.o.t.ui.dao.DataUtil - DataUtil - Tsp Dir=/opt/OSSM/3pps/tomcat/webapps/topology_maps/project/
15:18:26.548 [localhost-startStop-1] INFO c.h.n.o.t.ui.dao.DataUtil - DataUtil - Tsp file =/opt/OSSM/3pps/tomcat/webapps/topology_maps/project/topology_map.tsp
15:18:26.548 [localhost-startStop-1] INFO c.h.n.o.t.ui.dao.DataUtil - DataUtil - Color tree =false
15:18:26.548 [localhost-startStop-1] INFO c.h.n.o.t.ui.dao.DataUtil - DataUtil - Link decoration =false
15:18:26.548 [localhost-startStop-1] INFO c.h.n.o.t.ui.dao.DataUtil - DataUtil - Server refresh time =60
15:18:26.548 [localhost-startStop-1] INFO c.h.n.o.t.ui.dao.DataUtil - DataUtil - Relate link =false
15:18:26.548 [localhost-startStop-1] INFO c.h.n.o.t.ui.dao.DataUtil - DataUtil - Relate link color =000 000 204
15:18:26.549 [localhost-startStop-1] INFO c.h.n.o.t.ui.dao.DataUtil - DataUtil - Source Object =managed_object
15:18:26.551 [localhost-startStop-1] INFO c.h.n.o.t.ui.dao.DataSourceUtil - initDataSource - DataSource=jdbc/uoc_datasource
15:18:26.551 [localhost-startStop-1] INFO c.h.n.o.t.ui.dao.DataSourceUtil - initDataSource - driver=org.h2.Driver
15:18:26.551 [localhost-startStop-1] INFO c.h.n.o.t.ui.dao.DataSourceUtil - initDataSource - login=sa
15:18:26.552 [localhost-startStop-1] INFO c.h.n.o.t.ui.dao.DataSourceUtil - initDataSource - password=
15:18:26.552 [localhost-startStop-1] INFO c.h.n.o.t.ui.dao.DataSourceUtil - initDataSource - url=jdbc:h2:tcp://localhost:9093/mem:uocCenterPool;DB_CLOSE_DELAY=-1;MULTI_THREADED=1;LOCK_MODE=3;LOG=0;UNDO_LOG=0
15:18:26.552 [localhost-startStop-1] INFO c.h.n.o.t.ui.dao.DataSourceUtil - initDataSource - maxActive=100
15:18:26.552 [localhost-startStop-1] INFO c.h.n.o.t.ui.dao.DataSourceUtil - initDataSource - DataSource_dimension=jdbc/dimension_datasource
15:18:26.552 [localhost-startStop-1] INFO c.h.n.o.t.ui.dao.DataSourceUtil - initDataSource - driver_dim=org.h2.Driver
15:18:26.552 [localhost-startStop-1] INFO c.h.n.o.t.ui.dao.DataSourceUtil - initDataSource - login_dim=sa
15:18:26.552 [localhost-startStop-1] INFO c.h.n.o.t.ui.dao.DataSourceUtil - initDataSource - password_dim=
15:18:26.552 [localhost-startStop-1] INFO c.h.n.o.t.ui.dao.DataSourceUtil - initDataSource - url_dim=jdbc:h2:tcp://localhost:9093/mem:uocCenterPool;DB_CLOSE_DELAY=-1;MULTI_THREADED=1;LOCK_MODE=3;LOG=0;UNDO_LOG=0
15:18:26.552 [localhost-startStop-1] INFO c.h.n.o.t.ui.dao.DataSourceUtil - initDataSource - maxActive_dim=100
15:18:26.552 [localhost-startStop-1] INFO c.h.n.o.t.ui.dao.SqlFileExecutor - Database is using H2 for dimension, skip create tables.
15:18:26.552 [localhost-startStop-1] INFO c.h.n.o.t.ui.service.InitService - Start init...
15:18:26.554 [localhost-startStop-1] INFO c.h.n.o.t.u.s.AutoGetDimensionService - com.hp.ngoss.owd.topology_maps.ui.service.AutoGetDimensionService started.
15:18:26.554 [localhost-startStop-1] INFO c.h.n.o.t.ui.service.InitService - Dimension data refresh thread started.
15:18:26.554 [Thread-2] INFO c.h.n.o.t.u.s.AutoGetDimensionService - refresh dimension from db to cache every 60 seconds ...
15:18:26.556 [Thread-2] INFO c.h.n.o.t.u.s.AutoGetDimensionService - [2017-07-17 15:18:26] get dimension data from view...
I modify the logging.properties file under /usr/lib/jvm/java-1.7.0-openjdk-1.7.0.91-2.6.2.3.el7.x86_64/jre/lib/logging.properties according to http://tomcat.apache.org/tomcat-7.0-doc/logging.html and now it looks as follow
############################################################
# Default Logging Configuration File
#
# You can use a different file by specifying a filename
# with the java.util.logging.config.file system property.
# For example java -Djava.util.logging.config.file=myfile
############################################################
############################################################
# Global properties
############################################################
# "handlers" specifies a comma separated list of log Handler
# classes. These handlers will be installed during VM startup.
# Note that these classes must be on the system classpath.
# By default we only configure a ConsoleHandler, which will only
# show messages at the INFO and above levels.
handlers = org.apache.juli.FileHandler, java.util.logging.ConsoleHandler
############################################################
# Handler specific properties.
# Describes specific configuration info for Handlers.
############################################################
org.apache.juli.FileHandler.level = FINE
org.apache.juli.FileHandler.directory = ${catalina.base}/logs
org.apache.juli.FileHandler.prefix = OSSM
java.util.logging.ConsoleHandler.level = FINE
java.util.logging.ConsoleHandler.formatter = java.util.logging.SimpleFormatter
I also created a logging.properties, with the same content as above, in $CATALINA_HOME/conf
I already tried this Handler error in SLF4JBridgeHandler in tomcat logs but nothing changed.

Spring boot stops after starting on server

When I trying to deploy jar file on server at that time it is deployed successfully and then I execute startup.sh file after that spring boot application is start the execution but after execute bellow logs server is not responding any more.
[2016-07-15 11:01:38.714] boot - 14956 INFO [main] --- TomcatEmbeddedServletContainer: Tomcat started on port(s): 8084 (http)
[2016-07-15 11:01:38.723] boot - 14956 INFO [main] --- Application: Started Application in 64.717 seconds (JVM running for 67.138)
[2016-07-15 11:01:44.688] boot - 14956 INFO [Thread-4] --- AnnotationConfigEmbeddedWebApplicationContext: Closing org.springframework.boot.context.embedded.AnnotationConfigEmbeddedWebApplicationContext#64375c2a: startup date [Fri Jul 15 11:00:38 EDT 2016]; root of context hierarchy
[2016-07-15 11:01:44.692] boot - 14956 INFO [Thread-4] --- DefaultLifecycleProcessor: Stopping beans in phase 0
[2016-07-15 11:01:44.752] boot - 14956 INFO [Thread-4] --- AnnotationMBeanExporter: Unregistering JMX-exposed beans on shutdown
[2016-07-15 11:01:44.810] boot - 14956 INFO [Thread-4] --- LocalContainerEntityManagerFactoryBean: Closing JPA EntityManagerFactory for persistence unit 'default'
Also attached screenshot here.
Please Guide,
Thanks.
If you are using Maven add this to your pom.xml
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-web</artifactId>
</dependency>
It should work.

"Unknown error" with cypher query on all relations

Using neo4j 2.0.1 I frequently observe Java heap space problems. For example when trying to delete all relations of one type I only get an "unknown error".
I'm running neo4j server on my local machine (kubuntu 13.10) with 8 gig ram, 6gig java heap space. the same happens when performing the query on a virtual ubuntu server.
did not observe these issues with previous versions.
I also attached the neo4j output from the console. I'm not a java developer, so it does not really help me.
thanks for suggestions
Starting Neo4j Server console-mode...
Using additional JVM arguments: -server -XX:+DisableExplicitGC -Dorg.neo4j.server.properties=conf/neo4j-server.properties -Djava.util.logging.config.file=conf/logging.properties -Dlog4j.configuration=file:conf/log4j.properties -XX:+UseConcMarkSweepGC -XX:+CMSClassUnloadingEnabled -Xms512m -Xmx6196m
Detected incorrectly shut down database, performing recovery..
13:50:00.431 [main] WARN o.e.j.server.handler.ContextHandler - o.e.j.s.ServletContextHandler#35f6002a{/,null,null} contextPath ends with /
13:50:00.431 [main] WARN o.e.j.server.handler.ContextHandler - Empty contextPath
13:50:00.433 [main] INFO org.eclipse.jetty.server.Server - jetty-9.0.5.v20130815
13:50:00.458 [main] INFO o.e.j.server.handler.ContextHandler - Started o.e.j.s.h.MovedContextHandler#453831c{/,null,AVAILABLE}
13:50:00.534 [main] INFO o.e.j.w.StandardDescriptorProcessor - NO JSP Support for /webadmin, did not find org.apache.jasper.servlet.JspServlet
13:50:00.546 [main] INFO o.e.j.server.handler.ContextHandler - Started o.e.j.w.WebAppContext#3c3aea35{/webadmin,jar:file:/media/data/software/Neo4j/system/lib/neo4j-server-2.0.1-static-web.jar!/webadmin-html,AVAILABLE}
13:50:00.950 [main] INFO o.e.j.server.handler.ContextHandler - Started o.e.j.s.ServletContextHandler#2078afe{/db/manage,null,AVAILABLE}
13:50:01.206 [main] INFO o.e.j.server.handler.ContextHandler - Started o.e.j.s.ServletContextHandler#216e21b4{/db/data,null,AVAILABLE}
13:50:01.224 [main] INFO o.e.j.w.StandardDescriptorProcessor - NO JSP Support for /browser, did not find org.apache.jasper.servlet.JspServlet
13:50:01.225 [main] INFO o.e.j.server.handler.ContextHandler - Started o.e.j.w.WebAppContext#513f27b6{/browser,jar:file:/media/data/software/Neo4j/system/lib/neo4j-browser-2.0.1.jar!/browser,AVAILABLE}
13:50:01.314 [main] INFO o.e.j.server.handler.ContextHandler - Started o.e.j.s.ServletContextHandler#35f6002a{/,null,AVAILABLE}
13:50:01.327 [main] INFO o.e.jetty.server.ServerConnector - Started ServerConnector#42f400c3{HTTP/1.1}{localhost:7474}
13:50:01.756 [main] INFO o.e.jetty.server.ServerConnector - Started ServerConnector#40671ba6{SSL-HTTP/1.1}{localhost:7473}
13:50:02.380 [Thread-24] INFO o.e.jetty.server.ServerConnector - Stopped ServerConnector#42f400c3{HTTP/1.1}{localhost:7474}
13:50:02.384 [Thread-24] INFO o.e.jetty.server.ServerConnector - Stopped ServerConnector#40671ba6{SSL-HTTP/1.1}{localhost:7473}
13:50:02.385 [Thread-24] INFO o.e.j.server.handler.ContextHandler - Stopped o.e.j.s.ServletContextHandler#35f6002a{/,null,UNAVAILABLE}
13:50:02.386 [Thread-24] INFO o.e.j.server.handler.ContextHandler - Stopped o.e.j.w.WebAppContext#513f27b6{/browser,jar:file:/media/data/software/Neo4j/system/lib/neo4j-browser-2.0.1.jar!/browser,UNAVAILABLE}
13:50:02.387 [Thread-24] INFO o.e.j.server.handler.ContextHandler - Stopped o.e.j.s.ServletContextHandler#216e21b4{/db/data,null,UNAVAILABLE}
13:50:02.387 [Thread-24] INFO o.e.j.server.handler.ContextHandler - Stopped o.e.j.s.ServletContextHandler#2078afe{/db/manage,null,UNAVAILABLE}
13:50:02.388 [Thread-24] INFO o.e.j.server.handler.ContextHandler - Stopped o.e.j.w.WebAppContext#3c3aea35{/webadmin,jar:file:/media/data/software/Neo4j/system/lib/neo4j-server-2.0.1-static-web.jar!/webadmin-html,UNAVAILABLE}
13:50:02.388 [Thread-24] INFO o.e.j.server.handler.ContextHandler - Stopped o.e.j.s.h.MovedContextHandler#453831c{/,null,UNAVAILABLE}
Starting Neo4j Server console-mode...
Using additional JVM arguments: -server -XX:+DisableExplicitGC -Dorg.neo4j.server.properties=conf/neo4j-server.properties -Djava.util.logging.config.file=conf/logging.properties -Dlog4j.configuration=file:conf/log4j.properties -XX:+UseConcMarkSweepGC -XX:+CMSClassUnloadingEnabled -Xms512m -Xmx6196m
13:50:11.228 [main] WARN o.e.j.server.handler.ContextHandler - o.e.j.s.ServletContextHandler#21b4406c{/,null,null} contextPath ends with /
13:50:11.228 [main] WARN o.e.j.server.handler.ContextHandler - Empty contextPath
13:50:11.230 [main] INFO org.eclipse.jetty.server.Server - jetty-9.0.5.v20130815
13:50:11.256 [main] INFO o.e.j.server.handler.ContextHandler - Started o.e.j.s.h.MovedContextHandler#13b357fd{/,null,AVAILABLE}
13:50:11.346 [main] INFO o.e.j.w.StandardDescriptorProcessor - NO JSP Support for /webadmin, did not find org.apache.jasper.servlet.JspServlet
13:50:11.358 [main] INFO o.e.j.server.handler.ContextHandler - Started o.e.j.w.WebAppContext#24c13894{/webadmin,jar:file:/media/data/software/Neo4j/system/lib/neo4j-server-2.0.1-static-web.jar!/webadmin-html,AVAILABLE}
13:50:11.813 [main] INFO o.e.j.server.handler.ContextHandler - Started o.e.j.s.ServletContextHandler#66d51e79{/db/manage,null,AVAILABLE}
13:50:12.108 [main] INFO o.e.j.server.handler.ContextHandler - Started o.e.j.s.ServletContextHandler#4984bbd4{/db/data,null,AVAILABLE}
13:50:12.129 [main] INFO o.e.j.w.StandardDescriptorProcessor - NO JSP Support for /browser, did not find org.apache.jasper.servlet.JspServlet
13:50:12.131 [main] INFO o.e.j.server.handler.ContextHandler - Started o.e.j.w.WebAppContext#3f30e292{/browser,jar:file:/media/data/software/Neo4j/system/lib/neo4j-browser-2.0.1.jar!/browser,AVAILABLE}
13:50:12.241 [main] INFO o.e.j.server.handler.ContextHandler - Started o.e.j.s.ServletContextHandler#21b4406c{/,null,AVAILABLE}
13:50:12.258 [main] INFO o.e.jetty.server.ServerConnector - Started ServerConnector#7ad78ab8{HTTP/1.1}{localhost:7474}
13:50:12.708 [main] INFO o.e.jetty.server.ServerConnector - Started ServerConnector#3f9c4b9a{SSL-HTTP/1.1}{localhost:7473}
13:54:42.617 [qtp808144526-41] WARN o.e.jetty.servlet.ServletHandler - /db/manage/server/monitor/fetch
javax.ws.rs.WebApplicationException: javax.ws.rs.WebApplicationException: org.eclipse.jetty.io.EofException
at org.neo4j.server.rest.repr.OutputFormat$1.write(OutputFormat.java:174) ~[neo4j-server-2.0.1.jar:2.0.1]
at com.sun.jersey.core.impl.provider.entity.StreamingOutputProvider.writeTo(StreamingOutputProvider.java:71) ~[jersey-core-1.9.jar:1.9]
at com.sun.jersey.core.impl.provider.entity.StreamingOutputProvider.writeTo(StreamingOutputProvider.java:57) ~[jersey-core-1.9.jar:1.9]
at com.sun.jersey.spi.container.ContainerResponse.write(ContainerResponse.java:306) ~[jersey-server-1.9.jar:1.9]
at com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1437) ~[jersey-server-1.9.jar:1.9]
at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1349) ~[jersey-server-1.9.jar:1.9]
at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1339) ~[jersey-server-1.9.jar:1.9]
at com.sun.jersey.spi.container.servlet.WebComponent.service(WebComponent.java:416) ~[jersey-server-1.9.jar:1.9]
at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:537) ~[jersey-server-1.9.jar:1.9]
at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:699) ~[jersey-server-1.9.jar:1.9]
at javax.servlet.http.HttpServlet.service(HttpServlet.java:848) ~[javax.servlet-3.0.0.v201112011016.jar:na]
at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:698) ~[jetty-servlet-9.0.5.v20130815.jar:9.0.5.v20130815]
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1506) ~[jetty-servlet-9.0.5.v20130815.jar:9.0.5.v20130815]
at org.neo4j.server.rest.security.SecurityFilter.doFilter(SecurityFilter.java:112) ~[neo4j-server-2.0.1.jar:2.0.1]
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1477) ~[jetty-servlet-9.0.5.v20130815.jar:9.0.5.v20130815]
at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:503) [jetty-servlet-9.0.5.v20130815.jar:9.0.5.v20130815]
at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:211) [jetty-server-9.0.5.v20130815.jar:9.0.5.v20130815]
at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1096) [jetty-server-9.0.5.v20130815.jar:9.0.5.v20130815]
at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:432) [jetty-servlet-9.0.5.v20130815.jar:9.0.5.v20130815]
at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:175) [jetty-server-9.0.5.v20130815.jar:9.0.5.v20130815]
at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1030) [jetty-server-9.0.5.v20130815.jar:9.0.5.v20130815]
at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:136) [jetty-server-9.0.5.v20130815.jar:9.0.5.v20130815]
at org.eclipse.jetty.server.handler.HandlerList.handle(HandlerList.java:52) [jetty-server-9.0.5.v20130815.jar:9.0.5.v20130815]
at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:97) [jetty-server-9.0.5.v20130815.jar:9.0.5.v20130815]
at org.eclipse.jetty.server.Server.handle(Server.java:445) [jetty-server-9.0.5.v20130815.jar:9.0.5.v20130815]
at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:268) [jetty-server-9.0.5.v20130815.jar:9.0.5.v20130815]
at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:229) [jetty-server-9.0.5.v20130815.jar:9.0.5.v20130815]
at org.eclipse.jetty.io.AbstractConnection$ReadCallback.run(AbstractConnection.java:358) [jetty-io-9.0.5.v20130815.jar:9.0.5.v20130815]
at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:601) [jetty-util-9.0.5.v20130815.jar:9.0.5.v20130815]
at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:532) [jetty-util-9.0.5.v20130815.jar:9.0.5.v20130815]
at java.lang.Thread.run(Thread.java:744) [na:1.7.0_51]
Caused by: javax.ws.rs.WebApplicationException: org.eclipse.jetty.io.EofException
at org.neo4j.server.rest.repr.formats.StreamingJsonFormat$StreamingRepresentationFormat.flush(StreamingJsonFormat.java:401) ~[neo4j-server-2.0.1.jar:2.0.1]
at org.neo4j.server.rest.repr.formats.StreamingJsonFormat$StreamingRepresentationFormat.complete(StreamingJsonFormat.java:389) ~[neo4j-server-2.0.1.jar:2.0.1]
at org.neo4j.server.rest.repr.MappingRepresentation.serialize(MappingRepresentation.java:43) ~[server-api-2.0.1.jar:2.0.1]
at org.neo4j.server.rest.repr.OutputFormat$1.write(OutputFormat.java:160) ~[neo4j-server-2.0.1.jar:2.0.1]
... 30 common frames omitted
Caused by: org.eclipse.jetty.io.EofException: null
at org.eclipse.jetty.io.ChannelEndPoint.flush(ChannelEndPoint.java:186) ~[jetty-io-9.0.5.v20130815.jar:9.0.5.v20130815]
at org.eclipse.jetty.io.WriteFlusher.write(WriteFlusher.java:335) ~[jetty-io-9.0.5.v20130815.jar:9.0.5.v20130815]
at org.eclipse.jetty.io.AbstractEndPoint.write(AbstractEndPoint.java:125) ~[jetty-io-9.0.5.v20130815.jar:9.0.5.v20130815]
at org.eclipse.jetty.server.HttpConnection$ContentCallback.process(HttpConnection.java:784) ~[jetty-server-9.0.5.v20130815.jar:9.0.5.v20130815]
at org.eclipse.jetty.util.IteratingCallback.iterate(IteratingCallback.java:79) ~[jetty-util-9.0.5.v20130815.jar:9.0.5.v20130815]
at org.eclipse.jetty.server.HttpConnection.send(HttpConnection.java:356) [jetty-server-9.0.5.v20130815.jar:9.0.5.v20130815]
at org.eclipse.jetty.server.HttpChannel.sendResponse(HttpChannel.java:631) [jetty-server-9.0.5.v20130815.jar:9.0.5.v20130815]
at org.eclipse.jetty.server.HttpChannel.write(HttpChannel.java:661) [jetty-server-9.0.5.v20130815.jar:9.0.5.v20130815]
at org.eclipse.jetty.server.HttpOutput.flush(HttpOutput.java:151) ~[jetty-server-9.0.5.v20130815.jar:9.0.5.v20130815]
at com.sun.jersey.spi.container.servlet.WebComponent$Writer.flush(WebComponent.java:315) ~[jersey-server-1.9.jar:1.9]
at com.sun.jersey.spi.container.ContainerResponse$CommittingOutputStream.flush(ContainerResponse.java:145) ~[jersey-server-1.9.jar:1.9]
at org.codehaus.jackson.impl.Utf8Generator.flush(Utf8Generator.java:1091) ~[jackson-core-asl-1.9.7.jar:1.9.7]
at org.neo4j.server.rest.repr.formats.StreamingJsonFormat$StreamingRepresentationFormat.flush(StreamingJsonFormat.java:397) ~[neo4j-server-2.0.1.jar:2.0.1]
... 33 common frames omitted
That is unrelated to your config, the transaction size just gets too big.
If you want to delete elements in a batched way use something like this:
match (a)
with a
limit 10000
optional match (a)-[r]-()
delete a,r
return count(*)
run until the result is 0
Which will find at most 10000 nodes then find all their rels and then delete both.

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