springboot get error when server starting in linux - java

First, there are two Linux servers.
I want to build a redundant web server on two servers.
I installed jre1.8.0 on two servers equally.
And I installed the same spring boot war file on two servers equally.
By the way ....
Server 1 normally goes up and works normally.
Error on server # 2 ....
I've copied war and tomcat on server # 1 to server # 2.
I still get an error on server # 2.
The duplication structure is almost the same as all the settings ...
jre path I checked .. 1.8.0 I checked and ..... ha ...... what is the problem?
I can not figure out why the error is only on server 2, because it is the same file with the same settings.
This is the error log.
:: Spring Boot :: (v2.1.0.BUILD-SNAPSHOT)
2018-09-17 16:31:35 [DEBUG] [StartupInfoLogger.java]logStarting(53) :
Running with Spring Boot v2.1.0.BUILD-SNAPSHOT, Spring
v5.1.0.BUILD-SNAPSHOT
2018-09-17 16:31:35 [INFO ]
[SpringApplication.java]logStartupProfileInfo(701) : The following
profiles are active: dev
2018-09-17 16:31:35 [ERROR]
[LoggingFailureAnalysisReporter.java]report(42) :
APPLICATION FAILED TO START
Description:
An attempt was made to call the method org.springframework.beans.factory.annotation.AnnotatedBeanDefinition.setRole(I)V but it does not exist. Its class, org.springframework.beans.factory.annotation.AnnotatedBeanDefinition, is available from the following locations:
jar:file:{path}/WEB-INF/lib/spring-beans-5.1.0.RC3.jar!/org/springframework/beans/factory/annotation/AnnotatedBeanDefinition.class
jar:file:{path}/WEB-INF/lib/spring-beans-5.1.0.BUILD-SNAPSHOT.jar!/org/springframework/beans/factory/annotation/AnnotatedBeanDefinition.class
It was loaded from the following location:
file:{path}/WEB-INF/lib/spring-beans-5.1.0.RC3.jar
Action:
Correct the classpath of your application so that it contains a single, compatible version of
org.springframework.beans.factory.annotation.AnnotatedBeanDefinition
17-Sep-2018 16:31:35.890 ½É°¢ [localhost-startStop-1] org.apache.catalina.core.ContainerBase.addChildInternal ContainerBase.addChild:
start:
org.apache.catalina.LifecycleException: Failed to start component [StandardEngine[Catalina].StandardHost[localhost].StandardContext[/url]]
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:162)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:753)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:729)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:717)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:940)
at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1816)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.NoSuchMethodError:
org.springframework.beans.factory.annotation.AnnotatedBeanDefinition.setRole(I)V
at
org.springframework.context.annotation.AnnotationConfigUtils.processCommonDefinitionAnnotations(AnnotationConfigUtils.java:259)
at org.springframework.context.annotation.ConfigurationClassBeanDefinitionReader.loadBeanDefinitionsForBeanMethod(ConfigurationClassBeanDefinitionReader.java:228)
at org.springframework.context.annotation.ConfigurationClassBeanDefinitionReader.loadBeanDefinitionsForConfigurationClass(ConfigurationClassBeanDefinitionReader.java:140)
at org.springframework.context.annotation.ConfigurationClassBeanDefinitionReader.loadBeanDefinitions(ConfigurationClassBeanDefinitionReader.java:116)
at org.springframework.context.annotation.ConfigurationClassPostProcessor.processConfigBeanDefinitions(ConfigurationClassPostProcessor.java:327)
at org.springframework.context.annotation.ConfigurationClassPostProcessor.postProcessBeanDefinitionRegistry(ConfigurationClassPostProcessor.java:232)
at org.springframework.context.support.PostProcessorRegistrationDelegate.invokeBeanDefinitionRegistryPostProcessors(PostProcessorRegistrationDelegate.java:275)
at org.springframework.context.support.PostProcessorRegistrationDelegate.invokeBeanFactoryPostProcessors(PostProcessorRegistrationDelegate.java:95)
at org.springframework.context.support.AbstractApplicationContext.invokeBeanFactoryPostProcessors(AbstractApplicationContext.java:693)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:530)
at org.springframework.boot.web.servlet.context.ServletWebServerApplicationContext.refresh(ServletWebServerApplicationContext.java:140)
at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:797)
at org.springframework.boot.SpringApplication.refreshContext(SpringApplication.java:421)
at org.springframework.boot.SpringApplication.run(SpringApplication.java:340)
at org.springframework.boot.web.servlet.support.SpringBootServletInitializer.run(SpringBootServletInitializer.java:157)
at org.springframework.boot.web.servlet.support.SpringBootServletInitializer.createRootApplicationContext(SpringBootServletInitializer.java:137)
at org.springframework.boot.web.servlet.support.SpringBootServletInitializer.onStartup(SpringBootServletInitializer.java:91)
at org.springframework.web.SpringServletContainerInitializer.onStartup(SpringServletContainerInitializer.java:171)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5303)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:145)
... 10 more
17-Sep-2018 16:31:35.892 ½É°¢ [localhost-startStop-1]
org.apache.catalina.startup.HostConfig.deployWAR Error deploying web
application archive {Path}.War java.lang.IllegalStateException:
ContainerBase.addChild: start: org.apache.catalina.LifecycleException:
Failed to start component
[StandardEngine[Catalina].StandardHost[localhost].StandardContext[/url]]
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:757)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:729)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:717)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:940)
at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1816)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
17-Sep-2018 16:31:35.893 Á¤º¸ [localhost-startStop-1]
org.apache.catalina.startup.HostConfig.deployWAR Deployment of web
application archive {path}.war has finished in 3,617 ms 17-Sep-2018
16:31:35.894 Á¤º¸ [localhost-startStop-1]
org.apache.catalina.startup.HostConfig.deployDirectory Deploying web
application directory {path}/ROOT 17-Sep-2018 16:31:35.924 Á¤º¸
[localhost-startStop-1]
org.apache.catalina.startup.HostConfig.deployDirectory Deployment of
web application directory {path}/ROOT has finished in 30 ms
17-Sep-2018 16:31:35.926 Á¤º¸ [main]
org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler
["http-nio-5555"] 17-Sep-2018 16:31:35.932 Á¤º¸ [main]
org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler
["ajp-nio-4444"] 17-Sep-2018 16:31:35.934 Á¤º¸ [main]
org.apache.catalina.startup.Catalina.start Server startup in 3701 ms

Related

Unable to run my SpringBoot project on traditional tomcat

We have two SpringBoot projects project1(usermgmt) and project2(instrumentsetup). As we need to use the service and entities from project1 in project2, we packaged project1 as jar
and added that project1 jar under 'lib' folder of project2 (war)-root directory.
In pom.xml of project2, added below 'dependency' and 'plugin' for the same.
<dependency>
<groupId>com.xyz</groupId>
<artifactId>usermgmt</artifactId>
<version>1.0.0</version>
<!-- <scope>system</scope>
<systemPath>${basedir}/lib/usermgmt-1.0.0.jar</systemPath> -->
</dependency>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-install-plugin</artifactId>
<executions>
<execution>
<id>install-external</id>
<phase>clean</phase>
<configuration>
<file>${basedir}/lib/usermgmt_1.jar</file>
<repositoryLayout>default</repositoryLayout>
<groupId>com.xyz</groupId>
<artifactId>usermgmt</artifactId>
<packaging>jar</packaging>
<version>1.0.0</version>
<generatePom>true</generatePom>
</configuration>
<goals>
<goal>install-file</goal>
</goals>
</execution>
</executions>
</plugin>
Our main class of project2 contains the following:
com.xyz.usermgmt
-- project1 package
com.xyz.instrumentsetup
--- project2 package
#SpringBootApplication(scanBasePackages = {"com.xyz.usermgmt","com.xyz.instrumentsetup"})
#EntityScan({"com.xyz.usermgmt","com.xyz.instrumentsetup"})
#EnableJpaRepositories({"com.xyz.usermgmt","com.xyz.instrumentsetup"})
public class InstrumentsetupApplication extends SpringBootServletInitializer implements WebMvcConfigurer
{
private static final Logger log = LoggerFactory.getLogger(InstrumentsetupApplication.class);
#Override
protected SpringApplicationBuilder configure(SpringApplicationBuilder builder) {
return builder.sources(InstrumentsetupApplication.class).child(UsermgmtApplication.class).logStartupInfo(true);
}
public static void main(String[] args) {
log.info("Start of instrument setup");
ApplicationContext ctx = new SpringApplicationBuilder(InstrumentsetupApplication.class, UsermgmtApplication.class).run(args);
log.info("context created in instrument setup:" + ctx);
}
#Override
public void addCorsMappings(CorsRegistry registry) {
registry.addMapping("/**").allowedMethods("GET", "POST", "PUT", "DELETE");
}
}
Now our problem is that, this scenario works fine with embedded tomcat but not with traditional tomcat.
We created war of project2 using sts-4 and tried to deploy that war in tomcat 8.0.
Our jdk version - jdk1.8.0_201
error:
20-Jun-2019 17:41:08.491 INFO [localhost-startStop-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
20-Jun-2019 17:41:17.183 SEVERE [localhost-startStop-1] org.apache.catalina.core.ContainerBase.addChildInternal ContainerBase.addChild: start:
org.apache.catalina.LifecycleException: Failed to start component [StandardEngine[Catalina].StandardHost[localhost].StandardContext[/llelnweb]]
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:153)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:725)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:701)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:717)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:940)
at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1816)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'entityManagerFactory' defined in class path resource [org/springframework/boot/autoconfigure/orm/jpa/HibernateJpaConfiguration.class]: Invocation of init method failed; nested exception is org.hibernate.AnnotationException: #OneToOne or #ManyToOne on com.xyz.instrumentsetup.instrumentrights.model.InstrumentRights.user references an unknown entity: com.xyz.usermgmt.users.model.Users
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1778)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:593)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:515)
at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:320)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:318)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:199)
at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1105)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:867)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:549)
at org.springframework.boot.web.servlet.context.ServletWebServerApplicationContext.refresh(ServletWebServerApplicationContext.java:142)
at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:775)
at org.springframework.boot.SpringApplication.refreshContext(SpringApplication.java:397)
at org.springframework.boot.SpringApplication.run(SpringApplication.java:316)
at org.springframework.boot.builder.SpringApplicationBuilder.run(SpringApplicationBuilder.java:139)
at org.springframework.boot.builder.SpringApplicationBuilder.configureAsChildIfNecessary(SpringApplicationBuilder.java:152)
at org.springframework.boot.builder.SpringApplicationBuilder.build(SpringApplicationBuilder.java:171)
at org.springframework.boot.builder.SpringApplicationBuilder.build(SpringApplicationBuilder.java:161)
at org.springframework.boot.web.servlet.support.SpringBootServletInitializer.createRootApplicationContext(SpringBootServletInitializer.java:124)
at org.springframework.boot.web.servlet.support.SpringBootServletInitializer.onStartup(SpringBootServletInitializer.java:91)
at org.springframework.web.SpringServletContainerInitializer.onStartup(SpringServletContainerInitializer.java:171)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5240)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:147)
... 10 more
Caused by: org.hibernate.AnnotationException: #OneToOne or #ManyToOne on com.xyz.instrumentsetup.instrumentrights.model.InstrumentRights.user references an unknown entity: com.xyz.usermgmt.users.model.Users
at org.hibernate.cfg.ToOneFkSecondPass.doSecondPass(ToOneFkSecondPass.java:97)
at org.hibernate.boot.internal.InFlightMetadataCollectorImpl.processEndOfQueue(InFlightMetadataCollectorImpl.java:1827)
at org.hibernate.boot.internal.InFlightMetadataCollectorImpl.processFkSecondPassesInOrder(InFlightMetadataCollectorImpl.java:1771)
at org.hibernate.boot.internal.InFlightMetadataCollectorImpl.processSecondPasses(InFlightMetadataCollectorImpl.java:1658)
at org.hibernate.boot.model.process.spi.MetadataBuildingProcess.complete(MetadataBuildingProcess.java:287)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.metadata(EntityManagerFactoryBuilderImpl.java:904)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:935)
at org.springframework.orm.jpa.vendor.SpringHibernateJpaPersistenceProvider.createContainerEntityManagerFactory(SpringHibernateJpaPersistenceProvider.java:57)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory(LocalContainerEntityManagerFactoryBean.java:365)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.buildNativeEntityManagerFactory(AbstractEntityManagerFactoryBean.java:390)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet(AbstractEntityManagerFactoryBean.java:377)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.afterPropertiesSet(LocalContainerEntityManagerFactoryBean.java:341)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1837)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1774)
... 32 more
20-Jun-2019 17:41:17.183 SEVERE [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployWAR Error deploying web application archive C:\Program Files\Apache Software Foundation\Tomcat 8.0\webapps\llelnweb.war
java.lang.IllegalStateException: ContainerBase.addChild: start: org.apache.catalina.LifecycleException: Failed to start component [StandardEngine[Catalina].StandardHost[localhost].StandardContext[/llelnweb]]
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:729)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:701)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:717)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:940)
at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1816)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
20-Jun-2019 17:41:17.193 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive C:\Program Files\Apache Software Foundation\Tomcat 8.0\webapps\llelnweb.war has finished in 24,216 ms
20-Jun-2019 17:41:17.193 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory C:\Program Files\Apache Software Foundation\Tomcat 8.0\webapps\docs
20-Jun-2019 17:41:17.244 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory C:\Program Files\Apache Software Foundation\Tomcat 8.0\webapps\docs has finished in 51 ms
20-Jun-2019 17:41:17.244 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory C:\Program Files\Apache Software Foundation\Tomcat 8.0\webapps\ELNweb
20-Jun-2019 17:41:17.291 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory C:\Program Files\Apache Software Foundation\Tomcat 8.0\webapps\ELNweb has finished in 47 ms
20-Jun-2019 17:41:17.291 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory C:\Program Files\Apache Software Foundation\Tomcat 8.0\webapps\host-manager
20-Jun-2019 17:41:17.332 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory C:\Program Files\Apache Software Foundation\Tomcat 8.0\webapps\host-manager has finished in 41 ms
20-Jun-2019 17:41:17.342 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory C:\Program Files\Apache Software Foundation\Tomcat 8.0\webapps\manager
20-Jun-2019 17:41:17.392 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory C:\Program Files\Apache Software Foundation\Tomcat 8.0\webapps\manager has finished in 60 ms
20-Jun-2019 17:41:17.392 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory C:\Program Files\Apache Software Foundation\Tomcat 8.0\webapps\ROOT
20-Jun-2019 17:41:17.425 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory C:\Program Files\Apache Software Foundation\Tomcat 8.0\webapps\ROOT has finished in 33 ms
20-Jun-2019 17:41:17.435 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["http-nio-8080"]
20-Jun-2019 17:41:17.445 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["ajp-nio-8009"]
20-Jun-2019 17:41:17.445 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in 24547 ms
Hope someone could guide us in resolving out the issue.
Thanks in advance
Subashini

Which version of spring boot you are using? Latest version requires tomcat 9.

If you are using <artifactId>spring-boot-starter-tomcat</artifactId> and you want to deploy your app on a traditionnal Tomcat, you will have to tell in the build section of your pom.xml to use the provided Tomcat (<scope>provided</scope>). Have a look here for my solution or here for the Spring docs for traditionnal deployment.
I may be wrong because it's the first time I see that the problem come from an unknown class reference.

java.sql.SQLSyntaxErrorException: Access denied for user 'cavnus'#'localhost' to database 'vishipel'

I'm developing a JAX-RS service which run on Tomcat 8.0, and I got an exception when try to access Mysql database on my server. Here is exception which I got :
13-Jul-2018 11:36:30.899 INFO [main] org.apache.catalina.startup.Catalina.load Initialization processed in 2752 ms
13-Jul-2018 11:36:31.008 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service Catalina
13-Jul-2018 11:36:31.008 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet Engine: Apache Tomcat/8.0.53
13-Jul-2018 11:36:31.102 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive C:\Program Files\Apache Software Foundation\Tomcat 8.0\webapps\Vishipel.war
13-Jul-2018 11:36:42.102 SEVERE [localhost-startStop-1] org.apache.tomcat.jdbc.pool.ConnectionPool.init Unable to create initial connections of pool.
java.sql.SQLSyntaxErrorException: Access denied for user 'cavnus'#'localhost' to database 'vishipel'
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:118)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:95)
at com.mysql.cj.jdbc.exceptions.SQLExceptionsMapping.translateException(SQLExceptionsMapping.java:122)
at com.mysql.cj.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:862)
at com.mysql.cj.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:444)
at com.mysql.cj.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:230)
at com.mysql.cj.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:226)
at org.apache.tomcat.jdbc.pool.PooledConnection.connectUsingDriver(PooledConnection.java:307)
at org.apache.tomcat.jdbc.pool.PooledConnection.connect(PooledConnection.java:200)
at org.apache.tomcat.jdbc.pool.ConnectionPool.createConnection(ConnectionPool.java:728)
at org.apache.tomcat.jdbc.pool.ConnectionPool.borrowConnection(ConnectionPool.java:662)
at org.apache.tomcat.jdbc.pool.ConnectionPool.init(ConnectionPool.java:480)
at org.apache.tomcat.jdbc.pool.ConnectionPool.<init>(ConnectionPool.java:154)
at org.apache.tomcat.jdbc.pool.DataSourceProxy.pCreatePool(DataSourceProxy.java:115)
at org.apache.tomcat.jdbc.pool.DataSourceProxy.createPool(DataSourceProxy.java:102)
at org.apache.tomcat.jdbc.pool.DataSourceFactory.createDataSource(DataSourceFactory.java:559)
at org.apache.tomcat.jdbc.pool.DataSourceFactory.getObjectInstance(DataSourceFactory.java:244)
at org.apache.naming.factory.FactoryBase.getObjectInstance(FactoryBase.java:94)
at javax.naming.spi.NamingManager.getObjectInstance(Unknown Source)
at org.apache.naming.NamingContext.lookup(NamingContext.java:847)
at org.apache.naming.NamingContext.lookup(NamingContext.java:158)
at org.apache.naming.NamingContext.lookup(NamingContext.java:835)
at org.apache.naming.NamingContext.lookup(NamingContext.java:172)
at org.apache.catalina.core.NamingContextListener.addResource(NamingContextListener.java:1017)
at org.apache.catalina.core.NamingContextListener.createNamingContext(NamingContextListener.java:565)
at org.apache.catalina.core.NamingContextListener.lifecycleEvent(NamingContextListener.java:261)
at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:95)
at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:90)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5262)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:145)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:755)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:731)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:717)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:973)
at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1850)
at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
at java.util.concurrent.FutureTask.run(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
13-Jul-2018 11:36:42.117 WARNING [localhost-startStop-1] org.apache.naming.NamingContext.lookup Unexpected exception resolving reference
java.sql.SQLSyntaxErrorException: Access denied for user 'cavnus'#'localhost' to database 'vishipel'
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:118)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:95)
at com.mysql.cj.jdbc.exceptions.SQLExceptionsMapping.translateException(SQLExceptionsMapping.java:122)
at com.mysql.cj.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:862)
at com.mysql.cj.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:444)
at com.mysql.cj.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:230)
at com.mysql.cj.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:226)
at org.apache.tomcat.jdbc.pool.PooledConnection.connectUsingDriver(PooledConnection.java:307)
at org.apache.tomcat.jdbc.pool.PooledConnection.connect(PooledConnection.java:200)
at org.apache.tomcat.jdbc.pool.ConnectionPool.createConnection(ConnectionPool.java:728)
at org.apache.tomcat.jdbc.pool.ConnectionPool.borrowConnection(ConnectionPool.java:662)
at org.apache.tomcat.jdbc.pool.ConnectionPool.init(ConnectionPool.java:480)
at org.apache.tomcat.jdbc.pool.ConnectionPool.<init>(ConnectionPool.java:154)
at org.apache.tomcat.jdbc.pool.DataSourceProxy.pCreatePool(DataSourceProxy.java:115)
at org.apache.tomcat.jdbc.pool.DataSourceProxy.createPool(DataSourceProxy.java:102)
at org.apache.tomcat.jdbc.pool.DataSourceFactory.createDataSource(DataSourceFactory.java:559)
at org.apache.tomcat.jdbc.pool.DataSourceFactory.getObjectInstance(DataSourceFactory.java:244)
at org.apache.naming.factory.FactoryBase.getObjectInstance(FactoryBase.java:94)
at javax.naming.spi.NamingManager.getObjectInstance(Unknown Source)
at org.apache.naming.NamingContext.lookup(NamingContext.java:847)
at org.apache.naming.NamingContext.lookup(NamingContext.java:158)
at org.apache.naming.NamingContext.lookup(NamingContext.java:835)
at org.apache.naming.NamingContext.lookup(NamingContext.java:172)
at org.apache.catalina.core.NamingContextListener.addResource(NamingContextListener.java:1017)
at org.apache.catalina.core.NamingContextListener.createNamingContext(NamingContextListener.java:565)
at org.apache.catalina.core.NamingContextListener.lifecycleEvent(NamingContextListener.java:261)
at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:95)
at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:90)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5262)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:145)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:755)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:731)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:717)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:973)
at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1850)
at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
at java.util.concurrent.FutureTask.run(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
13-Jul-2018 11:36:42.133 WARNING [localhost-startStop-1] org.apache.catalina.core.NamingContextListener.addResource Failed to register in JMX: [javax.naming.NamingException: Unexpected exception resolving reference [Root exception is java.sql.SQLSyntaxErrorException: Access denied for user 'cavnus'#'localhost' to database 'vishipel']]
13-Jul-2018 11:36:42.258 INFO [localhost-startStop-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
13-Jul-2018 11:36:42.617 WARNING [localhost-startStop-1] org.apache.catalina.util.SessionIdGeneratorBase.createSecureRandom Creation of SecureRandom instance for session ID generation using [SHA1PRNG] took [234] milliseconds.
13-Jul-2018 11:36:42.852 INFO [localhost-startStop-1] com.sun.jersey.api.core.PackagesResourceConfig.init Scanning for root resource and provider classes in the packages:
com.vishipel
13-Jul-2018 11:36:43.336 INFO [localhost-startStop-1] com.sun.jersey.api.core.ScanningResourceConfig.logClasses Root resource classes found:
class com.vishipel.service.UsersService
class com.vishipel.service.NewsService
class com.vishipel.service.CustomerService
class com.vishipel.service.PostageService
13-Jul-2018 11:36:43.336 INFO [localhost-startStop-1] com.sun.jersey.api.core.ScanningResourceConfig.init No provider classes found.
13-Jul-2018 11:36:43.961 INFO [localhost-startStop-1] com.sun.jersey.server.impl.application.WebApplicationImpl._initiate Initiating Jersey application, version 'Jersey: 1.18 11/22/2013 01:21 AM'
13-Jul-2018 11:36:49.055 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive C:\Program Files\Apache Software Foundation\Tomcat 8.0\webapps\Vishipel.war has finished in 17,953 ms
13-Jul-2018 11:36:49.055 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory C:\Program Files\Apache Software Foundation\Tomcat 8.0\webapps\docs
13-Jul-2018 11:36:49.899 INFO [localhost-startStop-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
13-Jul-2018 11:36:49.899 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory C:\Program Files\Apache Software Foundation\Tomcat 8.0\webapps\docs has finished in 844 ms
13-Jul-2018 11:36:49.899 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory C:\Program Files\Apache Software Foundation\Tomcat 8.0\webapps\examples
13-Jul-2018 11:36:51.195 INFO [localhost-startStop-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
13-Jul-2018 11:36:51.414 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory C:\Program Files\Apache Software Foundation\Tomcat 8.0\webapps\examples has finished in 1,515 ms
13-Jul-2018 11:36:51.414 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory C:\Program Files\Apache Software Foundation\Tomcat 8.0\webapps\host-manager
13-Jul-2018 11:36:53.836 INFO [localhost-startStop-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
13-Jul-2018 11:36:53.836 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory C:\Program Files\Apache Software Foundation\Tomcat 8.0\webapps\host-manager has finished in 2,422 ms
13-Jul-2018 11:36:53.836 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory C:\Program Files\Apache Software Foundation\Tomcat 8.0\webapps\manager
13-Jul-2018 11:36:54.695 INFO [localhost-startStop-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
13-Jul-2018 11:36:54.695 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory C:\Program Files\Apache Software Foundation\Tomcat 8.0\webapps\manager has finished in 859 ms
13-Jul-2018 11:36:54.711 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory C:\Program Files\Apache Software Foundation\Tomcat 8.0\webapps\ROOT
13-Jul-2018 11:36:55.711 INFO [localhost-startStop-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
13-Jul-2018 11:36:55.711 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory C:\Program Files\Apache Software Foundation\Tomcat 8.0\webapps\ROOT has finished in 1,000 ms
13-Jul-2018 11:36:55.758 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in 24854 ms
13-Jul-2018 11:36:55.758 SEVERE [main] org.apache.catalina.core.StandardServer.await StandardServer.await: create[localhost:8005]:
Here is my code :
context.xml to config Mysql connection
<Context>
<Resource name = "jdbc/vishipel"
auth="Container" type="javax.sql.DataSource"
maxActive="25" maxIdle="10" maxWait="10000"
maxTotal="50" removeAbandonedTimeout="300"
defaultAutoCommit="true"
factory="org.apache.tomcat.jdbc.pool.DataSourceFactory"
username="cavnus" password="cavnus2016#"
driverClassName="com.mysql.jdbc.Driver"
url="jdbc:mysql://localhost:3306/vishipel"/>
</Context>
Define resource-ref in web.xml
<resource-ref>
<description>MySQL DataSource</description>
<res-ref-name>jdbc/vishipel</res-ref-name>
<res-type>javax.sql.DataSource</res-type>
<res-auth>Container</res-auth>
</resource-ref>
And here is code which I use to initialize DataSource
import javax.naming.Context;
import javax.naming.InitialContext;
import javax.naming.NamingException;
import javax.sql.DataSource;
import org.apache.log4j.Logger;
public class Database {
static Logger logger = Logger.getLogger(Database.class);
private static DataSource ds = null;
static {
logger.info("Inside Database() static method...");
Context context = null;
try {
context = new InitialContext();
ds = (DataSource) context.lookup("java:comp/env/jdbc/vishipel");
} catch (NamingException e) {
// TODO: handle exception
logger.error("Unable to get DataSource..." + e);
e.printStackTrace();
}
}
public static DataSource getDataSource(){
return ds;
}
}
It's work as well on my local with this code. But I got this exception when deploy to Tomcat on my server with war file which exported from my project.
My server is running Window Server 2012 R2 Standard 64 bit and MySql running on Wamp Server.
I'm already copy mysql-connector-java-8.0.11.jar into lib folder of Tomcat or set it to classpath enviroment. But I still got exceptions
Someone kindly help and give me a solution for this problem.
Thank you so much !

Deploying Web App Manually on TomCat

I am trying to deploy a web app manually on Tomcat.
I have created a "myapp" folder in webapps folder with following files and folders:-
1) myapp\WEB-INF\index.html
2) myapp\WEB-INF\classes
3) myapp\WEB-INF\lib
4) myapp\WEB-INF\myapp-servlet.xml
5) myapp\WEB-INF\web.html
But I am getting the following exception :-
java.lang.IllegalStateException: ContainerBase.addChild: start: org.apache.catalina.LifecycleException: Failed to start component [StandardEngine[Catalina].StandardHost[localhost].StandardContext[/myapp]]
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:756)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:728)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:734)
at org.apache.catalina.startup.HostConfig.deployDirectory(HostConfig.java:1141)
at org.apache.catalina.startup.HostConfig$DeployDirectory.run(HostConfig.java:1875)
at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
at java.util.concurrent.FutureTask.run(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
I linked my classes folder in tomcat and rest of the files I just copy pasted. I was able to run this like some time back. But I am not getting what i am missing. Is it build.xml? Thanks!
Update 1:-
05-Mar-2018 16:18:51.089 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version: Apache Tomcat/8.5.28
05-Mar-2018 16:18:51.093 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server built: Feb 6 2018 23:10:25 UTC
05-Mar-2018 16:18:51.093 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server number: 8.5.28.0
05-Mar-2018 16:18:51.093 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Name: Windows 10
05-Mar-2018 16:18:51.094 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Version: 10.0
05-Mar-2018 16:18:51.094 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Architecture: amd64
05-Mar-2018 16:18:51.094 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Java Home: C:\Program Files\Java\jdk1.8.0_161\jre
05-Mar-2018 16:18:51.094 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Version: 1.8.0_161-b12
05-Mar-2018 16:18:51.094 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor: Oracle Corporation
05-Mar-2018 16:18:51.095 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE: C:\Software Applications\apache-tomcat-8.5.28-windows-x64\apache-tomcat-8.5.28
05-Mar-2018 16:18:51.095 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME: C:\Software Applications\apache-tomcat-8.5.28-windows-x64\apache-tomcat-8.5.28
05-Mar-2018 16:18:51.095 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.config.file=C:\Software Applications\apache-tomcat-8.5.28-windows-x64\apache-tomcat-8.5.28\conf\logging.properties
05-Mar-2018 16:18:51.095 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
05-Mar-2018 16:18:51.095 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djdk.tls.ephemeralDHKeySize=2048
05-Mar-2018 16:18:51.096 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.protocol.handler.pkgs=org.apache.catalina.webresources
05-Mar-2018 16:18:51.096 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -agentlib:jdwp=transport=dt_socket,address=localhost:8000,server=y,suspend=n
05-Mar-2018 16:18:51.096 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dignore.endorsed.dirs=
05-Mar-2018 16:18:51.096 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.base=C:\Software Applications\apache-tomcat-8.5.28-windows-x64\apache-tomcat-8.5.28
05-Mar-2018 16:18:51.096 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.home=C:\Software Applications\apache-tomcat-8.5.28-windows-x64\apache-tomcat-8.5.28
05-Mar-2018 16:18:51.096 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.io.tmpdir=C:\Software Applications\apache-tomcat-8.5.28-windows-x64\apache-tomcat-8.5.28\temp
05-Mar-2018 16:18:51.097 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent Loaded APR based Apache Tomcat Native library [1.2.16] using APR version [1.6.3].
05-Mar-2018 16:18:51.097 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent APR capabilities: IPv6 [true], sendfile [true], accept filters [false], random [true].
05-Mar-2018 16:18:51.097 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent APR/OpenSSL configuration: useAprConnector [false], useOpenSSL [true]
05-Mar-2018 16:18:52.219 INFO [main] org.apache.catalina.core.AprLifecycleListener.initializeSSL OpenSSL successfully initialized [OpenSSL 1.0.2m 2 Nov 2017]
05-Mar-2018 16:18:52.442 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8080"]
05-Mar-2018 16:18:52.801 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read
05-Mar-2018 16:18:52.826 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["ajp-nio-8009"]
05-Mar-2018 16:18:52.831 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read
05-Mar-2018 16:18:52.833 INFO [main] org.apache.catalina.startup.Catalina.load Initialization processed in 2489 ms
05-Mar-2018 16:18:52.872 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service [Catalina]
05-Mar-2018 16:18:52.872 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet Engine: Apache Tomcat/8.5.28
05-Mar-2018 16:18:52.890 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [C:\Software Applications\apache-tomcat-8.5.28-windows-x64\apache-tomcat-8.5.28\webapps\docs]
05-Mar-2018 16:18:53.476 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [C:\Software Applications\apache-tomcat-8.5.28-windows-x64\apache-tomcat-8.5.28\webapps\docs] has finished in [586] ms
05-Mar-2018 16:18:53.478 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [C:\Software Applications\apache-tomcat-8.5.28-windows-x64\apache-tomcat-8.5.28\webapps\examples]
05-Mar-2018 16:18:54.474 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [C:\Software Applications\apache-tomcat-8.5.28-windows-x64\apache-tomcat-8.5.28\webapps\examples] has finished in [997] ms
05-Mar-2018 16:18:54.475 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [C:\Software Applications\apache-tomcat-8.5.28-windows-x64\apache-tomcat-8.5.28\webapps\host-manager]
05-Mar-2018 16:18:54.528 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [C:\Software Applications\apache-tomcat-8.5.28-windows-x64\apache-tomcat-8.5.28\webapps\host-manager] has finished in [54] ms
05-Mar-2018 16:18:54.529 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [C:\Software Applications\apache-tomcat-8.5.28-windows-x64\apache-tomcat-8.5.28\webapps\myapp]
05-Mar-2018 16:18:54.623 SEVERE [localhost-startStop-1] org.apache.catalina.core.ContainerBase.addChildInternal ContainerBase.addChild: start:
org.apache.catalina.LifecycleException: Failed to start component [StandardEngine[Catalina].StandardHost[localhost].StandardContext[/myapp]]
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:167)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:752)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:728)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:734)
at org.apache.catalina.startup.HostConfig.deployDirectory(HostConfig.java:1141)
at org.apache.catalina.startup.HostConfig$DeployDirectory.run(HostConfig.java:1875)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: org.apache.catalina.LifecycleException: Failed to start component [org.apache.catalina.webresources.StandardRoot#5323bab5]
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:167)
at org.apache.catalina.core.StandardContext.resourcesStart(StandardContext.java:4868)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5003)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
... 10 more
Caused by: org.apache.catalina.LifecycleException: Failed to initialize component [org.apache.catalina.webresources.JarResourceSet#3cbf78d5]
at org.apache.catalina.util.LifecycleBase.init(LifecycleBase.java:113)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:140)
at org.apache.catalina.webresources.StandardRoot.startInternal(StandardRoot.java:724)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
... 13 more
Caused by: java.lang.IllegalArgumentException: java.util.zip.ZipException: invalid LOC header (bad signature)
at org.apache.catalina.webresources.AbstractSingleArchiveResourceSet.initInternal(AbstractSingleArchiveResourceSet.java:142)
at org.apache.catalina.util.LifecycleBase.init(LifecycleBase.java:107)
... 16 more
Caused by: java.util.zip.ZipException: invalid LOC header (bad signature)
at java.util.zip.ZipFile.read(Native Method)
at java.util.zip.ZipFile.access$1400(ZipFile.java:60)
at java.util.zip.ZipFile$ZipFileInputStream.read(ZipFile.java:734)
at java.util.zip.ZipFile$ZipFileInflaterInputStream.fill(ZipFile.java:434)
at java.util.zip.InflaterInputStream.read(InflaterInputStream.java:158)
at sun.misc.IOUtils.readFully(IOUtils.java:65)
at java.util.jar.JarFile.getBytes(JarFile.java:425)
at java.util.jar.JarFile.getManifestFromReference(JarFile.java:193)
at java.util.jar.JarFile.getManifest(JarFile.java:180)
at org.apache.catalina.webresources.AbstractSingleArchiveResourceSet.initInternal(AbstractSingleArchiveResourceSet.java:140)
... 17 more
05-Mar-2018 16:18:54.627 SEVERE [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Error deploying web application directory [C:\Software Applications\apache-tomcat-8.5.28-windows-x64\apache-tomcat-8.5.28\webapps\myapp]
java.lang.IllegalStateException: ContainerBase.addChild: start: org.apache.catalina.LifecycleException: Failed to start component [StandardEngine[Catalina].StandardHost[localhost].StandardContext[/myapp]]
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:756)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:728)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:734)
at org.apache.catalina.startup.HostConfig.deployDirectory(HostConfig.java:1141)
at org.apache.catalina.startup.HostConfig$DeployDirectory.run(HostConfig.java:1875)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Update 2:-
Adding POM.xml now I am getting following exception
05-Mar-2018 16:33:41.240 SEVERE [localhost-startStop-1] org.apache.catalina.core.ContainerBase.addChildInternal ContainerBase.addChild: start:
org.apache.catalina.LifecycleException: Failed to start component [StandardEngine[Catalina].StandardHost[localhost].StandardContext[/myapp]]
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:167)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:752)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:728)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:734)
at org.apache.catalina.startup.HostConfig.deployDirectory(HostConfig.java:1141)
at org.apache.catalina.startup.HostConfig$DeployDirectory.run(HostConfig.java:1875)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.IllegalArgumentException: Servlet mapping specifies an unknown servlet name [myapp]
at org.apache.catalina.core.StandardContext.addServletMappingDecoded(StandardContext.java:3155)
at org.apache.catalina.core.StandardContext.addServletMappingDecoded(StandardContext.java:3145)
at org.apache.catalina.startup.ContextConfig.configureContext(ContextConfig.java:1375)
at org.apache.catalina.startup.ContextConfig.webConfig(ContextConfig.java:1189)
at org.apache.catalina.startup.ContextConfig.configureStart(ContextConfig.java:774)
at org.apache.catalina.startup.ContextConfig.lifecycleEvent(ContextConfig.java:299)
at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:94)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5113)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
... 10 more
05-Mar-2018 16:33:41.242 SEVERE [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Error deploying web application directory [C:\Software Applications\apache-tomcat-8.5.28-windows-x64\apache-tomcat-8.5.28\webapps\myapp]
java.lang.IllegalStateException: ContainerBase.addChild: start: org.apache.catalina.LifecycleException: Failed to start component [StandardEngine[Catalina].StandardHost[localhost].StandardContext[/myapp]]
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:756)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:728)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:734)
at org.apache.catalina.startup.HostConfig.deployDirectory(HostConfig.java:1141)
at org.apache.catalina.startup.HostConfig$DeployDirectory.run(HostConfig.java:1875)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)

You can start by cheking if you are using jdk path for the runtime enviroments, you must use jre path. Make sure that tomcat uses the same java version as your application.

Based on previous answer I did following things :-
1) Added pom.xml instead of lib folder
2) Changed the servlet name in the web.xml
Deployed the above web app successfully on tomcat.
Update :
It's not pom.xml that makes tomcat fail but some jars that conflicts with tomcat lib on removing those everything is fine.

Alfresco Context initialization failed : NoClassDefFoundError

After migrating an alfresco project from sdk 2.2.0 to sdk 3.0.1,
(Alfresco from sdk 2.2.0 to sdk3.0.1)
I have the following issue when i run, by eclipse, clean install alfresco:run.
2017-12-15 15:05:19,809 INFO [org.alfresco.repo.admin] [localhost-startStop-1] Using database URL 'jdbc:h2:C:\Users\jerome\eclipse\soludoc\klinck\klinck/alf_data_dev/h2_data/alf_dev;AUTO_SERVER=TRUE;DB_CLOSE_ON_EXIT=FALSE;LOCK_TIMEOUT=10000;MVCC=FALSE;LOCK_MODE=0' with user 'alfresco'.
2017-12-15 15:05:19,811 INFO [org.alfresco.repo.admin] [localhost-startStop-1] Connected to database H2 version 1.4.190 (2015-10-11)
2017-12-15 15:05:23,780 INFO [org.alfresco.repo.domain.schema.SchemaBootstrap] [localhost-startStop-1] Ignoring script patch (post-Hibernate): patch.db-V4.2-metadata-query-indexes
2017-12-15 15:05:23,780 INFO [org.alfresco.repo.domain.schema.SchemaBootstrap] [localhost-startStop-1] Ignoring script patch (post-Hibernate): patch.db-V5.1-metadata-query-indexes
2017-12-15 15:05:23,781 INFO [org.alfresco.repo.domain.schema.SchemaBootstrap] [localhost-startStop-1] Ignoring script patch (post-Hibernate): patch.db-V5.2-remove-jbpm-tables-from-db
2017-12-15 15:05:28,923 INFO [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] [localhost-startStop-1] Starting 'Authentication' subsystem, ID: [Authentication, managed, alfrescoNtlm1]
2017-12-15 15:05:29,071 INFO [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] [localhost-startStop-1] Startup of 'Authentication' subsystem, ID: [Authentication, managed, alfrescoNtlm1] complete
2017-12-15 15:05:31,043 ERROR [org.springframework.web.context.ContextLoader] [localhost-startStop-1] Context initialization failed
java.lang.NoClassDefFoundError: ca/uhn/hl7v2/HL7Exception
at java.lang.Class.getDeclaredMethods0(Native Method)
at java.lang.Class.privateGetDeclaredMethods(Class.java:2701)
at java.lang.Class.getDeclaredMethods(Class.java:1975)
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.buildLifecycleMetadata(InitDestroyAnnotationBeanPostProcessor.java:194)
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.findLifecycleMetadata(InitDestroyAnnotationBeanPostProcessor.java:176)
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessMergedBeanDefinition(InitDestroyAnnotationBeanPostProcessor.java:122)
at org.springframework.context.annotation.CommonAnnotationBeanPostProcessor.postProcessMergedBeanDefinition(CommonAnnotationBeanPostProcessor.java:284)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyMergedBeanDefinitionPostProcessors(AbstractAutowireCapableBeanFactory.java:872)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:495)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:458)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:293)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:223)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:290)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:191)
at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:636)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:938)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:479)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:410)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:306)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:112)
at org.alfresco.web.app.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:70)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4939)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5434)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1559)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1549)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.ClassNotFoundException: ca.uhn.hl7v2.HL7Exception
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1702)
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1547)
... 30 more
2017-12-15 15:05:31,394 WARN [org.springframework.web.context.support.XmlWebApplicationContext] [localhost-startStop-1] Exception thrown from ApplicationListener handling ContextClosedEvent
java.lang.NullPointerException
at org.alfresco.repo.workflow.activiti.ActivitiEngineInitializer.onShutdown(ActivitiEngineInitializer.java:65)
at org.springframework.extensions.surf.util.AbstractLifecycleBean.onApplicationEvent(AbstractLifecycleBean.java:67)
at org.alfresco.repo.management.SafeApplicationEventMulticaster.multicastEventInternal(SafeApplicationEventMulticaster.java:214)
at org.alfresco.repo.management.SafeApplicationEventMulticaster.multicastEvent(SafeApplicationEventMulticaster.java:190)
at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:334)
at org.springframework.context.support.AbstractApplicationContext.doClose(AbstractApplicationContext.java:1055)
at org.springframework.context.support.AbstractApplicationContext.close(AbstractApplicationContext.java:1016)
at org.springframework.web.context.ContextLoader.closeWebApplicationContext(ContextLoader.java:586)
at org.springframework.web.context.ContextLoaderListener.contextDestroyed(ContextLoaderListener.java:143)
at org.apache.catalina.core.StandardContext.listenerStop(StandardContext.java:4980)
at org.apache.catalina.core.StandardContext.stopInternal(StandardContext.java:5626)
at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:232)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:160)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1559)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1549)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
2017-12-15 15:05:31,394 WARN [org.springframework.web.context.support.XmlWebApplicationContext] [localhost-startStop-1] Exception thrown from LifecycleProcessor on context close
java.lang.IllegalStateException: LifecycleProcessor not initialized - call 'refresh' before invoking lifecycle methods via the context: Root WebApplicationContext: startup date [Fri Dec 15 15:05:16 CET 2017]; root of context hierarchy
at org.springframework.context.support.AbstractApplicationContext.getLifecycleProcessor(AbstractApplicationContext.java:360)
at org.springframework.context.support.AbstractApplicationContext.doClose(AbstractApplicationContext.java:1063)
at org.springframework.context.support.AbstractApplicationContext.close(AbstractApplicationContext.java:1016)
at org.springframework.web.context.ContextLoader.closeWebApplicationContext(ContextLoader.java:586)
at org.springframework.web.context.ContextLoaderListener.contextDestroyed(ContextLoaderListener.java:143)
at org.apache.catalina.core.StandardContext.listenerStop(StandardContext.java:4980)
at org.apache.catalina.core.StandardContext.stopInternal(StandardContext.java:5626)
at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:232)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:160)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1559)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1549)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
2017-12-15 15:05:32,086 INFO [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] [localhost-startStop-1] Stopping 'Authentication' subsystem, ID: [Authentication, managed, alfrescoNtlm1]
2017-12-15 15:05:32,086 INFO [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] [localhost-startStop-1] Stopped 'Authentication' subsystem, ID: [Authentication, managed, alfrescoNtlm1]
2017-12-15 15:22:09,156 INFO [org.alfresco.repo.admin] [localhost-startStop-1] Using database URL 'jdbc:h2:C:\Users\jerome\eclipse\soludoc\klinck\klinck/alf_data_dev/h2_data/alf_dev;AUTO_SERVER=TRUE;DB_CLOSE_ON_EXIT=FALSE;LOCK_TIMEOUT=10000;MVCC=FALSE;LOCK_MODE=0' with user 'alfresco'.
2017-12-15 15:22:09,157 INFO [org.alfresco.repo.admin] [localhost-startStop-1] Connected to database H2 version 1.4.190 (2015-10-11)
2017-12-15 15:22:12,871 INFO [org.alfresco.repo.domain.schema.SchemaBootstrap] [localhost-startStop-1] Ignoring script patch (post-Hibernate): patch.db-V4.2-metadata-query-indexes
2017-12-15 15:22:12,871 INFO [org.alfresco.repo.domain.schema.SchemaBootstrap] [localhost-startStop-1] Ignoring script patch (post-Hibernate): patch.db-V5.1-metadata-query-indexes
2017-12-15 15:22:12,871 INFO [org.alfresco.repo.domain.schema.SchemaBootstrap] [localhost-startStop-1] Ignoring script patch (post-Hibernate): patch.db-V5.2-remove-jbpm-tables-from-db
2017-12-15 15:22:18,177 INFO [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] [localhost-startStop-1] Starting 'Authentication' subsystem, ID: [Authentication, managed, alfrescoNtlm1]
2017-12-15 15:22:18,320 INFO [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] [localhost-startStop-1] Startup of 'Authentication' subsystem, ID: [Authentication, managed, alfrescoNtlm1] complete
2017-12-15 15:22:20,215 ERROR [org.springframework.web.context.ContextLoader] [localhost-startStop-1] Context initialization failed
java.lang.NoClassDefFoundError: ca/uhn/hl7v2/HL7Exception
at java.lang.Class.getDeclaredMethods0(Native Method)
at java.lang.Class.privateGetDeclaredMethods(Class.java:2701)
at java.lang.Class.getDeclaredMethods(Class.java:1975)
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.buildLifecycleMetadata(InitDestroyAnnotationBeanPostProcessor.java:194)
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.findLifecycleMetadata(InitDestroyAnnotationBeanPostProcessor.java:176)
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessMergedBeanDefinition(InitDestroyAnnotationBeanPostProcessor.java:122)
at org.springframework.context.annotation.CommonAnnotationBeanPostProcessor.postProcessMergedBeanDefinition(CommonAnnotationBeanPostProcessor.java:284)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyMergedBeanDefinitionPostProcessors(AbstractAutowireCapableBeanFactory.java:872)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:495)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:458)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:293)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:223)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:290)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:191)
at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:636)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:938)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:479)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:410)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:306)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:112)
at org.alfresco.web.app.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:70)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4939)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5434)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1559)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1549)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.ClassNotFoundException: ca.uhn.hl7v2.HL7Exception
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1702)
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1547)
... 30 more
I have deleted .m2/repository folder and I have deleted alf_data_dev folder but I have the same issue.
I have no error in my source code and I can access the HL7Exception....
update (20171218) :
Yes it is in my POM :
<dependency>
<groupId>ca.uhn.hapi</groupId>
<artifactId>hapi-base</artifactId>
<version>2.2</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi</groupId>
<artifactId>hapi-structures-v251</artifactId>
<version>2.2</version>
</dependency>
I had not this issue with sdk 2.2
It's why I don't understand.....
clean install command is ok but alfresco:run command shows this error
It happens when the embedded Tomcat starts ::
During some tests, I have noticed that the jars, corresponding to the dependencies added in the platform-jar POM, have not been created when I build the project.
I don't understand.

This mean you are missing at least one dependency in your pom , a dependency containing ca.uhn.hl7v2.HL7Exception
If you're sure you have all required dependencies on board, make sure that only dependencies from alfresco itself or tomcat are marked as provided in their scope.

Are you building an AMP or a JAR? You are using third-party libraries, so make sure you are building an AMP instead. (No one should ever be building JARs for Alfresco, IMO).
Unfortunately, starting with SDK 3.0.0 or 3.0.1 the default is to build JARs.
Look in your pom.xml for the Maven Assembly Plugin that calls build-amp-file. By default it is commented out. Uncomment it to build AMPs.

Found :
When adding dependencies to your project, make sure you place the dependencies in the platform pom file, as well as the main project pom file (depending on your project setup you might have to put the dependencies in both the dependencies section and the dependencyManagement section of the main project pom file).

RESTful webservice doesn't start on Tomcat 8.0.5

I wrote a simple webservice that parses an XMLfile with JAXB. This service works when I 'Run' it from the menu of NetBeans(Tomcat 8.0.3), But if I put the WAR file into webapps folder of tomcat and start tomcat(server.xml is identical between the two servers), I get the following error:
Please help resolve this:
01-Sep-2015 15:07:45.979 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8080"]
01-Sep-2015 15:07:46.006 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read
01-Sep-2015 15:07:46.009 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8443"]
01-Sep-2015 15:07:46.277 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read
01-Sep-2015 15:07:46.280 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["ajp-nio-8009"]
01-Sep-2015 15:07:46.283 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read
01-Sep-2015 15:07:46.283 INFO [main] org.apache.catalina.startup.Catalina.load Initialization processed in 824 ms
01-Sep-2015 15:07:46.330 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service Catalina
01-Sep-2015 15:07:46.330 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet Engine: Apache Tomcat/8.0.5
01-Sep-2015 15:07:46.356 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive C:\apache-tomcat-8.0.5-windows-x64\apache-tomcat-8.0.5\webapps\k4kReadOrderService.war
01-Sep-2015 15:07:46.372 WARNING [localhost-startStop-1] org.apache.catalina.startup.SetContextPropertiesRule.begin [SetContextPropertiesRule]{Context} Setting property 'antiJARLocking' to 'true' did not find a matching property.
01-Sep-2015 15:07:46.972 SEVERE [localhost-startStop-1] org.apache.catalina.startup.ContextConfig.processServletContainerInitializers Failed to process JAR found at URL [/k4kReadOrderService] for ServletContainerInitializers for context with name [{1}]
java.io.IOException: java.lang.ClassCastException: Cannot cast org.glassfish.jersey.servlet.init.JerseyServletContainerInitializer to javax.servlet.ServletContainerInitializer
at org.apache.catalina.startup.WebappServiceLoader.loadServices(WebappServiceLoader.java:185)
at org.apache.catalina.startup.WebappServiceLoader.load(WebappServiceLoader.java:151)
at org.apache.catalina.startup.ContextConfig.processServletContainerInitializers(ContextConfig.java:1597)
at org.apache.catalina.startup.ContextConfig.webConfig(ContextConfig.java:1125)
at org.apache.catalina.startup.ContextConfig.configureStart(ContextConfig.java:768)
at org.apache.catalina.startup.ContextConfig.lifecycleEvent(ContextConfig.java:303)
at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:117)
at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:90)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5058)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:726)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:702)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:697)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:976)
at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1762)
at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
at java.util.concurrent.FutureTask.run(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
Caused by: java.lang.ClassCastException: Cannot cast org.glassfish.jersey.servlet.init.JerseyServletContainerInitializer to javax.servlet.ServletContainerInitializer
at java.lang.Class.cast(Unknown Source)
at org.apache.catalina.startup.WebappServiceLoader.loadServices(WebappServiceLoader.java:182)
... 19 more
01-Sep-2015 15:07:47.006 SEVERE [localhost-startStop-1] org.apache.catalina.startup.ContextConfig.configureStart Marking this application unavailable due to previous error(s)
01-Sep-2015 15:07:47.015 SEVERE [localhost-startStop-1] org.apache.catalina.core.StandardContext.startInternal Error getConfigured
01-Sep-2015 15:07:47.017 SEVERE [localhost-startStop-1] org.apache.catalina.core.StandardContext.startInternal Context [/k4kReadOrderService] startup failed due to previous errors
01-Sep-2015 15:07:47.027 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory C:\apache-tomcat-8.0.5-windows-x64\apache-tomcat-8.0.5\webapps\docs
01-Sep-2015 15:07:47.142 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory C:\apache-tomcat-8.0.5-windows-x64\apache-tomcat-8.0.5\webapps\examples
01-Sep-2015 15:07:47.604 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory C:\apache-tomcat-8.0.5-windows-x64\apache-tomcat-8.0.5\webapps\host-manager
01-Sep-2015 15:07:47.647 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory C:\apache-tomcat-8.0.5-windows-x64\apache-tomcat-8.0.5\webapps\manager
01-Sep-2015 15:07:47.698 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory C:\apache-tomcat-8.0.5-windows-x64\apache-tomcat-8.0.5\webapps\ROOT
01-Sep-2015 15:07:47.726 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["http-nio-8080"]
01-Sep-2015 15:07:47.732 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["http-nio-8443"]
01-Sep-2015 15:07:47.734 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["ajp-nio-8009"]
01-Sep-2015 15:07:47.736 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in 1452 ms

Check if your servlet-api is included several times with:
mvn dependency:tree -Dverbose
If so, you can exclude transitional dependencies in one of them using (example of how I fixed same problem):
<dependency>
<groupId>org.glassfish.jersey.test-framework.providers</groupId>
<artifactId>jersey-test-framework-provider-jetty</artifactId>
<version>2.23.2</version>
<exclusions>
<exclusion>
<groupId>javax.servlet</groupId>
<artifactId>javax.servlet-api</artifactId>
</exclusion>
</exclusions>
</dependency>

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