Develop Reference

JavaFX program only runs everywhere except Raspberry Pi 3

I've written a program in IntelliJ Idea using JavaFX. It uses a Webkit property to display an html page in a JavaFX Window. My Program runs on every Device (Windows and Linux) except the Raspberry Pi 3b it should be running on. When I try it gives me this error:
Exception in Application start method
Exception in thread "main" java.lang.RuntimeException: Exception in Application start method
at javafx.graphics/com.sun.javafx.application.LauncherImpl.launchApplication1(LauncherImpl.java:900)
at javafx.graphics/com.sun.javafx.application.LauncherImpl.lambda$launchApplication$2(LauncherImpl.java:195)
at java.base/java.lang.Thread.run(Thread.java:829)
Caused by: java.lang.UnsatisfiedLinkError: no jfxwebkit in java.library.path: [/usr/java/packages/lib, /lib, /usr/lib]
at java.base/java.lang.ClassLoader.loadLibrary(ClassLoader.java:2673)
at java.base/java.lang.Runtime.loadLibrary0(Runtime.java:830)
at java.base/java.lang.System.loadLibrary(System.java:1873)
at javafx.graphics/com.sun.glass.utils.NativeLibLoader.loadLibraryInternal(NativeLibLoader.java:162)
at javafx.graphics/com.sun.glass.utils.NativeLibLoader.loadLibrary(NativeLibLoader.java:52)
at javafx.web/com.sun.webkit.WebPage.lambda$static$1(WebPage.java:134)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at javafx.web/com.sun.webkit.WebPage.<clinit>(WebPage.java:133)
at javafx.web/javafx.scene.web.WebEngine.<init>(WebEngine.java:847)
at javafx.web/javafx.scene.web.WebEngine.<init>(WebEngine.java:832)
at javafx.web/javafx.scene.web.WebView.<init>(WebView.java:260)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490)
at java.base/java.lang.Class.newInstance(Class.java:584)
at javafx.fxml/javafx.fxml.FXMLLoader$InstanceDeclarationElement.constructValue(FXMLLoader.java:1019)
at javafx.fxml/javafx.fxml.FXMLLoader$ValueElement.processStartElement(FXMLLoader.java:754)
at javafx.fxml/javafx.fxml.FXMLLoader.processStartElement(FXMLLoader.java:2722)
at javafx.fxml/javafx.fxml.FXMLLoader.loadImpl(FXMLLoader.java:2552)
at javafx.fxml/javafx.fxml.FXMLLoader.loadImpl(FXMLLoader.java:2466)
at javafx.fxml/javafx.fxml.FXMLLoader.load(FXMLLoader.java:2435)
at com.example.demo.Application.start(Application.java:32)
at javafx.graphics/com.sun.javafx.application.LauncherImpl.lambda$launchApplication1$9(LauncherImpl.java:846)
at javafx.graphics/com.sun.javafx.application.PlatformImpl.lambda$runAndWait$12(PlatformImpl.java:456)
at javafx.graphics/com.sun.javafx.application.PlatformImpl.lambda$runLater$10(PlatformImpl.java:429)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at javafx.graphics/com.sun.javafx.application.PlatformImpl.lambda$runLater$11(PlatformImpl.java:428)
at javafx.graphics/com.sun.glass.ui.InvokeLaterDispatcher$Future.run(InvokeLaterDispatcher.java:96)
at javafx.graphics/com.sun.glass.ui.gtk.GtkApplication._runLoop(Native Method)
at javafx.graphics/com.sun.glass.ui.gtk.GtkApplication.lambda$runLoop$11(GtkApplication.java:277)
... 1 more
I have tried installing various JDK's and JavaFX. I've tried OpenJFX, Bellsoft Full JDK and Gluon jfx-1.17.0.2. No matter which one i tried it all showed the same result. I had trouble finding a proper sdk due to the 32Bit Arm architecture. (all other devices used 64bit)
I have added them with module-path and added all required modules whilst opening the .jar but it did not do anything.

According to https://bell-sw.com/pages/liberica-release-notes-19/ even for the latest version of the FULL JDK "Java FX Webkit - does not work". I am not aware of any 32 bit distro for the raspi which would support Webkit.

Kotlin: [Internal Error] java.lang.NoClassDefFoundError: Could not initialize class com.intellij.pom.java.LanguageLevel

I just wrote
fun main() {
println("Hello World")
}
on Project\src\HelloWorld.kt
But, I came across this error: java.lang.NoClassDefFoundError.
I wonder why it doesn't work because I having seen the same print code run.
How do i serve this error?
Below is the content of error.
Kotlin: [Internal Error] java.lang.NoClassDefFoundError: Could not initialize class com.intellij.pom.java.LanguageLevel
at com.intellij.core.CoreLanguageLevelProjectExtension.<init>(CoreLanguageLevelProjectExtension.java:26)
at com.intellij.core.JavaCoreProjectEnvironment.<init>(JavaCoreProjectEnvironment.java:42)
at org.jetbrains.kotlin.cli.jvm.compiler.KotlinCoreProjectEnvironment.<init>(KotlinCoreProjectEnvironment.kt:26)
at org.jetbrains.kotlin.cli.jvm.compiler.KotlinCoreEnvironment$ProjectEnvironment.<init>(KotlinCoreEnvironment.kt:121)
at org.jetbrains.kotlin.cli.jvm.compiler.KotlinCoreEnvironment$Companion.createForProduction(KotlinCoreEnvironment.kt:425)
at org.jetbrains.kotlin.cli.jvm.K2JVMCompiler.createCoreEnvironment(K2JVMCompiler.kt:226)
at org.jetbrains.kotlin.cli.jvm.K2JVMCompiler.doExecute(K2JVMCompiler.kt:152)
at org.jetbrains.kotlin.cli.jvm.K2JVMCompiler.doExecute(K2JVMCompiler.kt:52)
at org.jetbrains.kotlin.cli.common.CLICompiler.execImpl(CLICompiler.kt:88)
at org.jetbrains.kotlin.cli.common.CLICompiler.execImpl(CLICompiler.kt:44)
at org.jetbrains.kotlin.cli.common.CLITool.exec(CLITool.kt:98)
at org.jetbrains.kotlin.daemon.CompileServiceImpl.compile(CompileServiceImpl.kt:1500)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:78)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:567)
at java.rmi/sun.rmi.server.UnicastServerRef.dispatch(UnicastServerRef.java:357)
at java.rmi/sun.rmi.transport.Transport$1.run(Transport.java:200)
at java.rmi/sun.rmi.transport.Transport$1.run(Transport.java:197)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:691)
at java.rmi/sun.rmi.transport.Transport.serviceCall(Transport.java:196)
at java.rmi/sun.rmi.transport.tcp.TCPTransport.handleMessages(TCPTransport.java:587)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run0(TCPTransport.java:828)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.lambda$run$0(TCPTransport.java:705)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:391)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run(TCPTransport.java:704)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1130)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:630)
at java.base/java.lang.Thread.run(Thread.java:831)

If you are using Java 16, it seems be a known issue about it. ref: JDK 16 - e: java.lang.NoClassDefFoundError: Could not initialize class org.jetbrains.kotlin.com.intellij.pom.java.LanguageLevel

Either update to Kotlin 1.5.10+ which supports JDK 16 or downgrade JDK version to the one supported by the Kotlin version you are using (try JDK 11).

What worked for me
is to use a workaround with illegal access flag
org.gradle.jvmargs=--illegal-access=permit -Dkotlin.daemon.jvm.options=--illegal-access=permit
clear Gradle cache
rm -r $HOME/.gradle/caches/
and after all Gradle daemons killed
pkill -f '.*GradleDaemon.*'
You can try to sync the project and rebuild

I followed the instructions on this issue https://youtrack.jetbrains.com/issue/KT-46604.
Just hit the update button on IntelliJ and after that the application worked even with JDK 16.

Does Nashorn (org.openjdk.nashorn) have any support for Java 17?

I am trying to run an ANT build of our product using nashorn-core:15.1.1.jar with Java 17 (pre-release - build 27) and I get:
BUILD FAILED
java.lang.ExceptionInInitializerError
at org.openjdk.nashorn.internal.runtime.Context.compile(Context.java:1509)
at org.openjdk.nashorn.internal.runtime.Context.compileScript(Context.java:1449)
at org.openjdk.nashorn.internal.runtime.Context.compileScript(Context.java:759)
at org.openjdk.nashorn.api.scripting.NashornScriptEngine.compileImpl(NashornScriptEngine.java:528)
at org.openjdk.nashorn.api.scripting.NashornScriptEngine.compileImpl(NashornScriptEngine.java:517)
at org.openjdk.nashorn.api.scripting.NashornScriptEngine.evalImpl(NashornScriptEngine.java:395)
at org.openjdk.nashorn.api.scripting.NashornScriptEngine.eval(NashornScriptEngine.java:151)
at java.scripting/javax.script.AbstractScriptEngine.eval(AbstractScriptEngine.java:262)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at org.apache.tools.ant.util.ReflectUtil.invoke(ReflectUtil.java:108)
at org.apache.tools.ant.util.ReflectWrapper.invoke(ReflectWrapper.java:81)
at org.apache.tools.ant.util.optional.JavaxScriptRunner.evaluateScript(JavaxScriptRunner.java:103)
at org.apache.tools.ant.util.optional.JavaxScriptRunner.executeScript(JavaxScriptRunner.java:67)
at org.apache.tools.ant.taskdefs.optional.Script.execute(Script.java:52)
at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:291)
at jdk.internal.reflect.GeneratedMethodAccessor4.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106)
at org.apache.tools.ant.Task.perform(Task.java:348)
at org.apache.tools.ant.Target.execute(Target.java:392)
at org.apache.tools.ant.Target.performTasks(Target.java:413)
at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1399)
at org.apache.tools.ant.Project.executeTarget(Project.java:1368)
at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:41)
at org.apache.tools.ant.Project.executeTargets(Project.java:1251)
at org.apache.tools.ant.Main.runBuild(Main.java:811)
at org.apache.tools.ant.Main.startAnt(Main.java:217)
at org.apache.tools.ant.launch.Launcher.run(Launcher.java:280)
at org.apache.tools.ant.launch.Launcher.main(Launcher.java:109)
Caused by: java.lang.RuntimeException: java.lang.NoSuchMethodException: no such method: sun.misc.Unsafe.defineAnonymousClass(Class,byte[],Object[])Class/invokeVirtual
at org.openjdk.nashorn.internal.runtime.Context$AnonymousContextCodeInstaller.lambda$getDefineAnonymousClass$0(Context.java:335)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:318)
at org.openjdk.nashorn.internal.runtime.Context$AnonymousContextCodeInstaller.getDefineAnonymousClass(Context.java:327)
at org.openjdk.nashorn.internal.runtime.Context$AnonymousContextCodeInstaller.<clinit>(Context.java:317)
... 33 more
Caused by: java.lang.NoSuchMethodException: no such method: sun.misc.Unsafe.defineAnonymousClass(Class,byte[],Object[])Class/invokeVirtual
at java.base/java.lang.invoke.MemberName.makeAccessException(MemberName.java:976)
at java.base/java.lang.invoke.MemberName$Factory.resolveOrFail(MemberName.java:1117)
at java.base/java.lang.invoke.MethodHandles$Lookup.resolveOrFail(MethodHandles.java:3643)
at java.base/java.lang.invoke.MethodHandles$Lookup.findVirtual(MethodHandles.java:2680)
at org.openjdk.nashorn.internal.runtime.Context$AnonymousContextCodeInstaller.lambda$getDefineAnonymousClass$0(Context.java:329)
... 36 more
Caused by: java.lang.NoSuchMethodError: 'java.lang.Class sun.misc.Unsafe.defineAnonymousClass(java.lang.Class, byte[], java.lang.Object[])'
at java.base/java.lang.invoke.MethodHandleNatives.resolve(Native Method)
at java.base/java.lang.invoke.MemberName$Factory.resolve(MemberName.java:1085)
at java.base/java.lang.invoke.MemberName$Factory.resolveOrFail(MemberName.java:1114)
... 39 more
I might be too early for being able to use Nashorn with Java 17, but figured I would check.

Yes, OpenJDK Nashorn supports Java 17 starting with version 15.3.
It had to be adapted to gracefully handle the fact defineAnonymousClass method was removed from the Unsafe class in Java 17.

Unfortunately, support for Java Nashorn has been removed from Java 15 onwards and it is going to stay that way. It had been deprecated since Java 11 onwards.
I suggest,if possible, migrating to GraalVM JavaScript which is actively maintained. The main reason Nashhorn had been removed from Java 15 onwards.
The Nashorn JavaScript engine was first incorporated into JDK 8 via JEP 174 as a replacement for the Rhino scripting engine. When it was released, it was a complete implementation of the ECMAScript-262 5.1 standard.With the rapid pace at which ECMAScript language constructs, along with APIs, are adapted and modified, we have found Nashorn challenging to maintain.

JAXBException when running lint test

I have an app that pass a lint test on circleCI, but fail on local machine with the following error
java.lang.NoClassDefFoundError: javax/xml/bind/JAXBException
at java.base/java.lang.Class.getDeclaredConstructors0(Native Method)
at java.base/java.lang.Class.privateGetDeclaredConstructors(Class.java:3090)
at java.base/java.lang.Class.getConstructor0(Class.java:3295)
at java.base/java.lang.Class.newInstance(Class.java:532)
at org.jetbrains.kotlin.cli.jvm.plugins.ServiceLoaderLite.loadImplementations(ServiceLoaderLite.kt:50)
at org.jetbrains.kotlin.kapt3.ClasspathBasedKapt3Extension$loadProcessors$efficientProcessorLoader$1.doLoadProcessors(Kapt3Extension.kt:83)
at org.jetbrains.kotlin.kapt3.base.ProcessorLoader.loadProcessors(ProcessorLoader.kt:45)
at org.jetbrains.kotlin.kapt3.base.ProcessorLoader.loadProcessors$default(ProcessorLoader.kt:28)
at org.jetbrains.kotlin.kapt3.ClasspathBasedKapt3Extension.loadProcessors(Kapt3Extension.kt:88)
at org.jetbrains.kotlin.kapt3.AbstractKapt3Extension.analysisCompleted(Kapt3Extension.kt:171)
at org.jetbrains.kotlin.kapt3.ClasspathBasedKapt3Extension.analysisCompleted(Kapt3Extension.kt:98)
at org.jetbrains.kotlin.cli.jvm.compiler.TopDownAnalyzerFacadeForJVM$analyzeFilesWithJavaIntegration$2.invoke(TopDownAnalyzerFacadeForJVM.kt:96)
at org.jetbrains.kotlin.cli.jvm.compiler.TopDownAnalyzerFacadeForJVM.analyzeFilesWithJavaIntegration(TopDownAnalyzerFacadeForJVM.kt:106)
at org.jetbrains.kotlin.cli.jvm.compiler.TopDownAnalyzerFacadeForJVM.analyzeFilesWithJavaIntegration$default(TopDownAnalyzerFacadeForJVM.kt:82)
at org.jetbrains.kotlin.cli.jvm.compiler.KotlinToJVMBytecodeCompiler$analyze$1.invoke(KotlinToJVMBytecodeCompiler.kt:384)
at org.jetbrains.kotlin.cli.jvm.compiler.KotlinToJVMBytecodeCompiler$analyze$1.invoke(KotlinToJVMBytecodeCompiler.kt:70)
at org.jetbrains.kotlin.cli.common.messages.AnalyzerWithCompilerReport.analyzeAndReport(AnalyzerWithCompilerReport.kt:107)
at org.jetbrains.kotlin.cli.jvm.compiler.KotlinToJVMBytecodeCompiler.analyze(KotlinToJVMBytecodeCompiler.kt:375)
at org.jetbrains.kotlin.cli.jvm.compiler.KotlinToJVMBytecodeCompiler.compileModules$cli(KotlinToJVMBytecodeCompiler.kt:123)
at org.jetbrains.kotlin.cli.jvm.K2JVMCompiler.doExecute(K2JVMCompiler.kt:131)
at org.jetbrains.kotlin.cli.jvm.K2JVMCompiler.doExecute(K2JVMCompiler.kt:54)
at org.jetbrains.kotlin.cli.common.CLICompiler.execImpl(CLICompiler.kt:84)
at org.jetbrains.kotlin.cli.common.CLICompiler.execImpl(CLICompiler.kt:42)
at org.jetbrains.kotlin.cli.common.CLITool.exec(CLITool.kt:103)
at org.jetbrains.kotlin.daemon.CompileServiceImpl$compile$1$1$2.invoke(CompileServiceImpl.kt:442)
at org.jetbrains.kotlin.daemon.CompileServiceImpl$compile$1$1$2.invoke(CompileServiceImpl.kt:102)
at org.jetbrains.kotlin.daemon.CompileServiceImpl$doCompile$$inlined$ifAlive$lambda$2.invoke(CompileServiceImpl.kt:1027)
at org.jetbrains.kotlin.daemon.CompileServiceImpl$doCompile$$inlined$ifAlive$lambda$2.invoke(CompileServiceImpl.kt:102)
at org.jetbrains.kotlin.daemon.common.DummyProfiler.withMeasure(PerfUtils.kt:137)
at org.jetbrains.kotlin.daemon.CompileServiceImpl.checkedCompile(CompileServiceImpl.kt:1069)
at org.jetbrains.kotlin.daemon.CompileServiceImpl.doCompile(CompileServiceImpl.kt:1026)
at org.jetbrains.kotlin.daemon.CompileServiceImpl.compile(CompileServiceImpl.kt:441)
at jdk.internal.reflect.GeneratedMethodAccessor111.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:564)
at java.rmi/sun.rmi.server.UnicastServerRef.dispatch(UnicastServerRef.java:359)
at java.rmi/sun.rmi.transport.Transport$1.run(Transport.java:200)
at java.rmi/sun.rmi.transport.Transport$1.run(Transport.java:197)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.rmi/sun.rmi.transport.Transport.serviceCall(Transport.java:196)
at java.rmi/sun.rmi.transport.tcp.TCPTransport.handleMessages(TCPTransport.java:562)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run0(TCPTransport.java:796)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.lambda$run$0(TCPTransport.java:677)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run(TCPTransport.java:676)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1135)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
at java.base/java.lang.Thread.run(Thread.java:844)
Caused by: java.lang.ClassNotFoundException: javax.xml.bind.JAXBException
at java.base/java.net.URLClassLoader.findClass(URLClassLoader.java:466)
at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:566)
at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:499)
... 48 more
I do not use JAXB and I have no idea where does this come from. More frustrating is I can build my app without any error.
I have tried the solutions in the following links, but none of them works for my case.
https://www.concretepage.com/questions/556
How to resolve java.lang.NoClassDefFoundError: javax/xml/bind/JAXBException in Java 9
Has anyone experienced similar issues?

The JAXB APIs are considered to be J2EE APIs, therefore not present default class path in Java SE 9. In JDK 11 they are completely removed. But, these Java EE APIs that were provided in JDK 6/7/8 are still in the JDK.

Edit 10/2020:
I ran into this issue again some time ago when CircleCi update their java image from jdk8 to jdk11. I was able to solve this issue by updating the Gradle tool. Looks like in the latest version of Gradle lint no longer use JAXB APIs.
Old answer: Today I finally solve this issue. Here is what I did.
I attempted to solve this issue by reinstalling Android Studio 3.4. However I couldn't even start up Android Studio and I ran into this
java.lang.RuntimeException:
com.intellij.ide.plugins.PluginManager$StartupAbortedException:
Fatal error initializing 'com.android.tools.idea.AndroidInitialConfigurator'
Then I looked for answers and came across this page
[Can't start Android Studio][1]
[1]: https://superuser.com/questions/1391452/cant-start-android-studio
I reverted back to use jdk 8.
Android Studio 3.4 finally started up, and JAXBException was gone.

AWS Ubuntu java.lang.ClassNotFoundException: Jama.Matrix

I am trying to run a mutation clustering algorithm described in
https://tinyheero.github.io/2015/08/26/TrAp.html
Running java -jar TrApWithDependencies.jar --text figure1.txt works fine on my laptop running windows 10, but not on AWS ubuntu. I would like to run it on my AWS instance because the algorithm is very RAM hungry and will run out of memory for input data with 50 or more rows.
Running it on Ubuntu Server 18.04 LTS gives me the following error. I believe the key issue is with Jama.Matrix
Exception in thread "main" java.lang.reflect.InvocationTargetException
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.eclipse.jdt.internal.jarinjarloader.JarRsrcLoader.main(JarRsrcLoader.java:58)
Caused by: java.lang.NoClassDefFoundError: Jama/Matrix
at klugerlab.trap.data.Solution.fitClones(Solution.java:703)
at klugerlab.trap.algo.MinimalClonesSolver.processTemplate(MinimalClonesSolver.java:168)
at klugerlab.trap.algo.MinimalClonesSolver.completeSolutions(MinimalClonesSolver.java:204)
at klugerlab.trap.algo.MinimalClonesSolver.runSolver(MinimalClonesSolver.java:250)
at klugerlab.trap.algo.Solver.run(Solver.java:229)
at klugerlab.trap.algo.Job.run(Job.java:97)
at klugerlab.trap.TrApMain.main(TrApMain.java:120)
... 5 more
Caused by: java.lang.ClassNotFoundException: Jama.Matrix
at java.base/java.net.URLClassLoader.findClass(URLClassLoader.java:471)
at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:588)
at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:521)
... 12 more
I do not have access to the source code, only the .jar file.