How to add a local JNI jar in a pom file properly? - java

I have a SpringbootApplication that provides a REST API, let's call it fetchPrediction.
This fetchPrediction API uses some classes defined inside a JAR file, which is a JNI.
My application compiles and starts, however, if I call the fetchPrediction API it fails.
When I do jar -xvf on the created jar after mvn clean install, I do not see the classes that should be picked up by including the jar dependency.
Also, when I try to run the Jar file I see ClassNotDefinedException for the classes inside the JAR.
How can I do this properly?
Currently I am importing the JAR dependency as follows:
<dependency>
<groupId>jarcom.jarlib</groupId>
<artifactId>jarname</artifactId>
<version>1.0</version>
<scope>system</scope>
<systemPath>${project.basedir}/jarname.jar</systemPath>
</dependency>

In an spring boot application you usually do not have JNI parts. Furthermore the spring-boot-maven-plugin by default does not include dependencies with <scope>system</scope> that's the reason why you do not see the jar file in the resulting jar.
You have to have to configure the spring-boot-maven-plugin and set the includeSystemScope to true as described in the docs for the plugin.
<project>
...
<build>
...
<plugins>
...
<plugin>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-maven-plugin</artifactId>
<version>2.2.4.RELEASE</version>
<executions>
<execution>
<id>repackage</id>
<goals>
<goal>repackage</goal>
</goals>
<configuration>
<includeSystemScope>true</includeSystemScope>
</configuration>
</execution>
</executions>
...
</plugin>
...
</plugins>
...
</build>
...
</project>

Related

Versions Maven Plugin rules that are inheritable

When running mvn versions:display-dependency-updates for the Version Maven Plugin I see lots of things like this:
[INFO] org.slf4j:slf4j-api ........................... 1.7.36 -> 2.0.0-alpha7
But just because I'm not using the alpha version of a later version doesn't mean I'm not using the latest available release version. Another Stack Overflow answer indicated that I can set up a rules.xml file to ignore versions like *.-alpha*, putting something like this in my POM:
<configuration>
<rulesUri>file:///${project.basedir}/rules.xml</rulesUri>
</configuration>
My question: is this rules.xml file inheritable? If I put it in a separate project in a parent POM of <packaging>pom</packaging>, published to Maven Central, will the child POMs pick it up? Or will the child projects look for a rules.xml file in the child project directory?
I want to configure the versions-maven-plugin in the parent POM (as I do already) and run mvn versions:display-dependency-updates on any child POM or descendant POM. How can I set up the ignore rules in the parent POM so that these version ignore rules will be picked up when I check for dependency updates in a child POM? (Is there no way to include the rule within the POM itself?)
Or will the child projects look for a rules.xml file in the child project directory?
Yes, if you define the rules.xml file via ${project.basedir} it will resolve to the current local base directory of the child project. I've verified this with a simple parent-child pom setup. So that will not work, unless you duplicate the rules file in every project.
If you wish to include the plugin configuration and ruleset in the parent pom without duplicating the rules file, you have two options:
If you have your ruleset xml file hosted at, for example, http://www.mycompany.com/maven-version-rules.xml then the following configuration in your corporate pom would ensure that all projects use this rule set.
<configuration>
<rulesUri>http://www.mycompany.com/maven-version-rules.xml</rulesUri>
</configuration>
or
You can provide your ruleset xml file also within a jar, if you want to distribute your ruleset xml as Maven artifact. Therefore you have to declare the containing jar as direct dependency of the versions-maven-plugin and to use classpath as protocol.
<configuration>
<rulesUri>classpath:///package/foo/bar/rules.xml</rulesUri>
</configuration>
<dependencies>
<dependency>
<groupId>com.mycompany</groupId>
<artifactId>version-rules</artifactId>
<version>1.0</version>
</dependency>
</dependencies>
Source:
https://www.mojohaus.org/versions-maven-plugin/version-rules.html
The configuration in the pom only has rudimentary includes and excludes filters. Those will allow you to exclude any dependency as a whole, but not specific update versions. As far as i can tell from the available documentation there is no way to define version rules in any other way.
See
https://www.mojohaus.org/versions-maven-plugin/examples/advancing-dependency-versions.html
Update 09-2022
In the github ticket we found in the comments we can see the following update:
It looks like a feature like this has recently been implemented by #369. Please see #318 where it's possible to provide inclusion and exclusion filters for determining which dependency patterns will be considered. Thanks to that, you can rule out patterns such as .*-beta. or .*_ALPHA, albeit not using regexp, but simple asterisk wildcards.
This will land in today's release (2.12.0).
This will add the following features:
Version 2.12.0 will introduce new arguments: dependencyIncluded, dependencyExcludes, dependencyManagementIncludes, dependencyManagementExcludes.
With the following example configuration in pom.xml given:
<profile>
<id>display-dependency-updates</id>
<build>
<plugins>
<plugin>
<groupId>${project.groupId}</groupId>
<artifactId>${project.artifactId}</artifactId>
<version>${project.version}</version>
<executions>
<execution>
<phase>validate</phase>
<goals>
<goal>display-dependency-updates</goal>
</goals>
<configuration>
<dependencyIncludes>org.apache.maven.*:doxia*</dependencyIncludes>
<dependencyManagementIncludes>com.puppy*:*</dependencyManagementIncludes>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</build>
</profile>
This will also be implemented for filtering plugin and pluginManagement, but that will probably be added in a later release:
So, I've just added the missing plugin- and plugin management filtering which works likewise. I really doubt it will land into today's release though.
Pasting my answer here from Github, because I think it might benefit others.
Provided you have a directory called rules-test in your project containing the rules template file:
<ruleset comparisonMethod="maven"
xmlns="http://mojo.codehaus.org/versions-maven-plugin/rule/2.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://mojo.codehaus.org/versions-maven-plugin/rule/2.0.0
https://www.mojohaus.org/versions-maven-plugin/xsd/rule-2.0.0.xsd">
<ignoreVersions>
<ignoreVersion type="regex">${ignoredVersions}</ignoreVersion>
</ignoreVersions>
</ruleset>
Then, in your main project, create the following profile:
<profile>
<id>rules-test</id>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-resources-plugin</artifactId>
<version>3.3.0</version>
<executions>
<execution>
<phase>validate</phase>
<goals>
<goal>copy-resources</goal>
</goals>
<configuration>
<resources>
<resource>
<directory>rules-test</directory>
<filtering>true</filtering>
</resource>
</resources>
<outputDirectory>${project.basedir}</outputDirectory>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>versions-maven-plugin</artifactId>
<version>2.12.0</version>
<executions>
<execution>
<phase>validate</phase>
<goals>
<goal>display-dependency-updates</goal>
</goals>
<configuration>
<rulesUri>file://${project.basedir}/compiled-rules.xml</rulesUri>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</build>
</profile>
If you then execute the following Maven target:
mvn -P rules-test "-DignoredVersions=.*-(M\d*|.*-SNAPSHOT)" clean validate
then you will get a dependencies report using the filter in the -DignoredVersions argument (filtering out both *-M* and *-SNAPSHOT).
And if you put your ignoredVerions property in your project instead of passing it as a -D argument, then it will be inheritable!

How to include opencv in an intellij sub module (maven)

I'm using IntelliJ IDE with maven. I have a project (main module) with a parent pom, that includes 2 sub modules, each with their own pom.
<!-- main pom module part -->
<packaging>pom</packaging>
<modules>
<module>ModuleA</module>
<module>ModuleB</module>
</modules>
<!-- example for sub module pom -->
<parent>
<artifactId>main-module</artifactId>
<groupId>my.main.module</groupId>
<version>0.5.0</version>
</parent>
Image ModuleA includes the OpenCV Java wrapper and ModuleB is an executable java program (having the main class) using ModuleA.
The compiling works fine, but when I run ModuleB with having set the library path in the launcher, I'll get the following error for ModuleA:
java.lang.NoClassDefFoundError: org/opencv/core/Core
Any suggestions how to fix this?
Ok, I found a solution my self. The problem was, that the opencv java wrapper was included with a system path. Now I use the maven install plugin within the validate live cycle step instead.
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-install-plugin</artifactId>
<version>2.5</version>
<executions>
<execution>
<phase>validate</phase>
<goals>
<goal>install-file</goal>
</goals>
<configuration>
<groupId>org.opencv</groupId>
<artifactId>opencv</artifactId>
<version>3.3.0</version>
<packaging>jar</packaging>
<file>${project.basedir}/../lib/opencv/opencv-330.jar</file>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</build>
Works fine for me, but was not the way I wanted it to be... The system-path type dependency seems to be buggy in maven.
Try to add the following dependency to your ModuleA:
<dependency>
<groupId>nu.pattern</groupId>
<artifactId>opencv</artifactId>
<version>2.4.9-7</version>
</dependency>

a maven program is able to run successfully from eclipse but not from command prompt [duplicate]

My first use of Maven and I'm stuck with dependencies.
I created a Maven project with Eclipse and added dependencies, and it was working without problems.
But when I try to run it via command line:
$ mvn package # successfully completes
$ java -cp target/bil138_4-0.0.1-SNAPSHOT.jar tr.edu.hacettepe.cs.b21127113.bil138_4.App # NoClassDefFoundError for dependencies
It downloads dependencies, successfully builds, but when I try to run it, I get NoClassDefFoundError:
Exception in thread "main" java.lang.NoClassDefFoundError: org/codehaus/jackson/JsonParseException
at tr.edu.hacettepe.cs.b21127113.bil138_4.db.DatabaseManager.<init>(DatabaseManager.java:16)
at tr.edu.hacettepe.cs.b21127113.bil138_4.db.DatabaseManager.<init>(DatabaseManager.java:22)
at tr.edu.hacettepe.cs.b21127113.bil138_4.App.main(App.java:10)
Caused by: java.lang.ClassNotFoundException: org.codehaus.jackson.JsonParseException
at java.net.URLClassLoader$1.run(URLClassLoader.java:217)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:205)
at java.lang.ClassLoader.loadClass(ClassLoader.java:321)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:294)
at java.lang.ClassLoader.loadClass(ClassLoader.java:266)
... 3 more
My pom.xml is like this:
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>tr.edu.hacettepe.cs.b21127113</groupId>
<artifactId>bil138_4</artifactId>
<version>0.0.1-SNAPSHOT</version>
<packaging>jar</packaging>
<name>bil138_4</name>
<url>http://maven.apache.org</url>
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
</properties>
<dependencies>
<dependency>
<groupId>org.codehaus.jackson</groupId>
<artifactId>jackson-core-asl</artifactId>
</dependency>
<dependency>
<groupId>org.codehaus.jackson</groupId>
<artifactId>jackson-mapper-asl</artifactId>
</dependency>
</dependencies>
<dependencyManagement>
<dependencies>
<dependency>
<groupId>org.codehaus.jackson</groupId>
<artifactId>jackson-core-asl</artifactId>
<version>1.9.6</version>
</dependency>
<dependency>
<groupId>org.codehaus.jackson</groupId>
<artifactId>jackson-mapper-asl</artifactId>
<version>1.9.6</version>
</dependency>
</dependencies>
</dependencyManagement>
</project>
Can anyone help me?
By default, Maven doesn't bundle dependencies in the JAR file it builds, and you're not providing them on the classpath when you're trying to execute your JAR file at the command-line. This is why the Java VM can't find the library class files when trying to execute your code.
You could manually specify the libraries on the classpath with the -cp parameter, but that quickly becomes tiresome.
A better solution is to "shade" the library code into your output JAR file. There is a Maven plugin called the maven-shade-plugin to do this. You need to register it in your POM, and it will automatically build an "uber-JAR" containing your classes and the classes for your library code too when you run mvn package.
To simply bundle all required libraries, add the following to your POM:
<project>
...
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-shade-plugin</artifactId>
<version>3.4.1</version>
<executions>
<execution>
<phase>package</phase>
<goals>
<goal>shade</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</build>
...
</project>
Once this is done, you can rerun the commands you used above:
$ mvn package
$ java -cp target/bil138_4-0.0.1-SNAPSHOT.jar tr.edu.hacettepe.cs.b21127113.bil138_4.App
If you want to do further configuration of the shade plugin in terms of what JARs should be included, specifying a Main-Class for an executable JAR file, and so on, see the "Examples" section on the maven-shade-plugin site.
when I try to run it, I get NoClassDefFoundError
Run it how? You're probably trying to run it with eclipse without having correctly imported your maven classpath. See the m2eclipse plugin for integrating maven with eclipse for that.
To verify that your maven config is correct, you could run your app with the exec plugin using:
mvn exec:java -D exec.mainClass=<your main class>
Update: First, regarding your error when running exec:java, your main class is tr.edu.hacettepe.cs.b21127113.bil138_4.App. When talking about class names, they're (almost) always dot-separated. The simple class name is just the last part: App in your case. The fully-qualified name is the full package plus the simple class name, and that's what you give to maven or java when you want to run something. What you were trying to use was a file system path to a source file. That's an entirely different beast. A class name generally translates directly to a class file that's found in the class path, as compared to a source file in the file system. In your specific case, the class file in question would probably be at target/classes/tr/edu/hacettepe/cs/b21127113/bil138_4/App.class because maven compiles to target/classes, and java traditionally creates a directory for each level of packaging.
Your original problem is simply that you haven't put the Jackson jars on your class path. When you run a java program from the command line, you have to set the class path to let it know where it can load classes from. You've added your own jar, but not the other required ones. Your comment makes me think you don't understand how to manually build a class path. In short, the class path can have two things: directories containing class files and jars containing class files. Directories containing jars won't work. For more details on building a class path, see "Setting the class path" and the java and javac tool documentation.
Your class path would need to be at least, and without the line feeds:
target/bil138_4-0.0.1-SNAPSHOT.jar:
/home/utdemir/.m2/repository/org/codehaus/jackson/jackson-core-asl/1.9.6/jackson-core-asl-1.9.6.jar:
/home/utdemir/.m2/repository/org/codehaus/jackson/jackson-mapper-asl/1.9.6/jackson-mapper-asl-1.9.6.jar
Note that the separator on Windows is a semicolon (;).
I apologize for not noticing it sooner. The problem was sitting there in your original post, but I missed it.
You have to make classpath in pom file for your dependency. Therefore you have to copy all the dependencies into one place.
Check my blog.
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-dependency-plugin</artifactId>
<version>2.1</version>
<executions>
<execution>
<id>copy-dependencies</id>
<phase>package</phase>
<goals>
<goal>copy-dependencies</goal>
</goals>
<configuration>
<outputDirectory>${project.build.directory}/lib</outputDirectory>
<overWriteReleases>false</overWriteReleases>
<overWriteSnapshots>false</overWriteSnapshots>
<overWriteIfNewer>true</overWriteIfNewer>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<version>2.4</version>
<configuration>
<archive>
<manifest>
<addClasspath>true</addClasspath>
<classpathPrefix>lib/</classpathPrefix>
<mainClass>$fullqualified path to your main Class</mainClass>
</manifest>
</archive>
</configuration>
</plugin>
</plugins>
</build>
This is due to Morphia jar not being part of your output war/jar. Eclipse or local build includes them as part of classpath, but remote builds or auto/scheduled build don't consider them part of classpath.
You can include dependent jars using plugin.
Add below snippet into your pom's plugins section
<plugin>
<artifactId>maven-assembly-plugin</artifactId>
<version>3.0.0</version>
<configuration>
<descriptorRefs>
<descriptorRef>jar-with-dependencies</descriptorRef>
</descriptorRefs>
</configuration>
</plugin>
For some reason, the lib is present while compiling, but missing while running.
My situation is, two versions of one lib conflict.
For example, A depends on B and C, while B depends on D:1.0, C depends on D:1.1, maven may
just import D:1.0. If A uses one class which is in D:1.1 but not in D:1.0, a NoClassDefFoundError will be throwed.
If you are in this situation too, you need to resolve the dependency conflict.
I was able to work around it by running mvn install:install-file with -Dpackaging=class. Then adding entry to POM as described here:
Choosing to Project -> Clean should resolve this

Add InstallerListener to IzPack installer project with Maven

I have a working IzPack installer project set up with maven and added following to my install script install.xml to [installation][listeners]:
<listener classname="(company-name).listener.InstallerListener" stage="install"/>
Sadly, the line seems to be ignored and the debugger does not halt on set breakpoints in the InstallListener class. I have read the documentation for InstallListeners, but it is not useful as I have the build process integrated with maven; here are the relevant parts of the Project Object Model pom.xml:
<properties>
<izpack-standalone.version>4.3.1</izpack-standalone.version>
</properties>
<dependencies>
<!-- izpack -->
<dependency>
<groupId>org.codehaus.izpack</groupId>
<artifactId>izpack-standalone-compiler</artifactId>
<version>${izpack-standalone.version}</version>
<optional>true</optional>
</dependency>
</dependencies>
<plugins>
<!-- IzPack compiler -->
<plugin>
<groupId>org.codehaus.izpack</groupId>
<artifactId>izpack-maven-plugin</artifactId>
<version>${org.codehaus.izpack.izpack-maven-plugin.version}</version>
<dependencies>
<dependency>
<groupId>org.codehaus.izpack</groupId>
<artifactId>izpack-standalone-compiler</artifactId>
<version>${izpack-standalone.version}</version>
</dependency>
</dependencies>
<configuration>
<izpackBasedir>${staging.dir}</izpackBasedir>
<customPanelDirectory>${staging.dir}</customPanelDirectory>
</configuration>
<executions>
<execution>
<id>standard-installer</id>
<phase>package</phase>
<goals>
<goal>izpack</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
What am I missing here?
Note: The compiled installer does contain the specified InstallerListener class file, so it is available at runtime.
You must place the jar file containing your panel classes into the {customPanelDirectory}/bin/panels folder where it will be picked up automatically by the izpack-maven-plugin.
In the case above this folder would resolve to {staging.dir}/bin/panels since you configured <customPanelDirectory>${staging.dir}</customPanelDirectory>.
Adding it to install.xml file will not work, since this would be resolved at install time, but not at installer build time.

Does Enunicate maven plug-in could generate the data model which in other java project?

Would you please help me to fix a problem I met that to use Enunciate maven plug-in? The problem is my domain is in other project, not in API project (not package, but java project), so when generate the documents, there is no data model, but I create a data model (#XmlRootElement) in the same project of API, it generated. So, does the plug-in could generate the data model which in other project?
Check out the FAQ. The first question links to this document which teaches you how to "import" classes into the project.
1.Export sources from your external API project
You can add this to the API project or to the parent project in case this API project it's a module
<project ...>
...
<build>
...
<plugins>
...
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-source-plugin</artifactId>
<executions>
<execution>
<id>attach-sources</id>
<phase>package</phase>
<goals>
<goal>jar</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</build>
</project>
2.add a reference to the package in your enunciate.xml file
<enunciate ...>
<api-import pattern="com.mycompany.pck1.dao.*" />
</enunciate ...>
3.create the dependency to the sources of the external project.
<project ...>
...
<dependencies>
...
<dependency>
<groupId>...</groupId>
<artifactId>domain</artifactId>
<version>...</version>
<classifier>sources</classifier>
<scope>compile</scope>
<optional>true</optional>
</dependency>
...
</dependencies>
** enunciate will try to compile your code so you need to add all the dependencies to external libraries
More Help: Multi-module projects

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