Develop Reference

Run Geoserver platform independent binary over https?

I am new to work on Geoserver,now i have a requirement to run geoserver over https. I had followed some steps to configure jetty for https but it didn't work,i might have went wrong somewhere.
java.lang.IllegalStateException: No constructor class org.eclipse.jetty.server.ServerConnector([],{}) in file:/C:/Users/sanja/Downloads/geoserver-2.17.1-bin/etc/jetty-https.xml
at org.eclipse.jetty.xml.XmlConfiguration$JettyXmlConfiguration.configure(XmlConfiguration.java:406)
at org.eclipse.jetty.xml.XmlConfiguration.configure(XmlConfiguration.java:311)
at org.eclipse.jetty.xml.XmlConfiguration$1.run(XmlConfiguration.java:1558)
at org.eclipse.jetty.xml.XmlConfiguration$1.run(XmlConfiguration.java:1512)
at java.security.AccessController.doPrivileged(Native Method)
at org.eclipse.jetty.xml.XmlConfiguration.main(XmlConfiguration.java:1511)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.eclipse.jetty.start.Main.invokeMain(Main.java:220)
at org.eclipse.jetty.start.Main.start(Main.java:490)
at org.eclipse.jetty.start.Main.main(Main.java:77)
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.eclipse.jetty.start.Main.invokeMain(Main.java:220)
at org.eclipse.jetty.start.Main.start(Main.java:490)
at org.eclipse.jetty.start.Main.main(Main.java:77)
Caused by: java.lang.IllegalStateException: No constructor class org.eclipse.jetty.server.ServerConnector([],{}) in file:/C:/Users/sanja/Downloads/geoserver-2.17.1-bin/etc/jetty-https.xml
at org.eclipse.jetty.xml.XmlConfiguration$JettyXmlConfiguration.configure(XmlConfiguration.java:406)
at org.eclipse.jetty.xml.XmlConfiguration.configure(XmlConfiguration.java:311)
at org.eclipse.jetty.xml.XmlConfiguration$1.run(XmlConfiguration.java:1558)
at org.eclipse.jetty.xml.XmlConfiguration$1.run(XmlConfiguration.java:1512)
at java.security.AccessController.doPrivileged(Native Method)
at org.eclipse.jetty.xml.XmlConfiguration.main(XmlConfiguration.java:1511)
... 7 more
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.eclipse.jetty.start.Main.invokeMain(Main.java:220)
at org.eclipse.jetty.start.Main.start(Main.java:490)
at org.eclipse.jetty.start.Main.main(Main.java:77)
Caused by: java.lang.IllegalStateException: No constructor class org.eclipse.jetty.server.ServerConnector([],{}) in file:/C:/Users/sanja/Downloads/geoserver-2.17.1-bin/etc/jetty-https.xml
at org.eclipse.jetty.xml.XmlConfiguration$JettyXmlConfiguration.configure(XmlConfiguration.java:406)
at org.eclipse.jetty.xml.XmlConfiguration.configure(XmlConfiguration.java:311)
at org.eclipse.jetty.xml.XmlConfiguration$1.run(XmlConfiguration.java:1558)
at org.eclipse.jetty.xml.XmlConfiguration$1.run(XmlConfiguration.java:1512)
at java.security.AccessController.doPrivileged(Native Method)
at org.eclipse.jetty.xml.XmlConfiguration.main(XmlConfiguration.java:1511)
... 7 more
These are the errors(ref image).
I am not so good in java too.

Don't run the platform independent binary in production!
If you still need to add HTTPS support then you need to follow the Eclipse instructions to add HTTPS to Jetty.
Without knowing how far you got along that path it's impossible to give any further advice.

JavaFX program won't run with FontAwesome-FX web icons

I have been given the following output when including an FXML file with 3 icons of type MaterialDesignIconView
/Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/bin/java "-javaagent:/Applications/IntelliJ IDEA CE.app/Contents/lib/idea_rt.jar=64397:/Applications/IntelliJ IDEA CE.app/Contents/bin" -Dfile.encoding=UTF-8 -classpath /Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/jre/lib/charsets.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/jre/lib/deploy.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/jre/lib/ext/cldrdata.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/jre/lib/ext/dnsns.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/jre/lib/ext/jfxrt.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/jre/lib/ext/localedata.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/jre/lib/ext/nashorn.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/jre/lib/ext/sunec.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/jre/lib/ext/sunjce_provider.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/jre/lib/ext/sunpkcs11.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/jre/lib/ext/zipfs.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/jre/lib/javaws.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/jre/lib/jce.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/jre/lib/jfr.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/jre/lib/jfxswt.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/jre/lib/jsse.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/jre/lib/management-agent.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/jre/lib/plugin.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/jre/lib/resources.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/jre/lib/rt.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/lib/ant-javafx.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/lib/dt.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/lib/javafx-mx.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/lib/jconsole.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/lib/sa-jdi.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/lib/tools.jar:/Users/reshaunp/toolsuite/out/production/toolsuite:/Users/reshaunp/Downloads/fontawesomefx-8.9.jar ToolSuite.Main
objc[59702]: Class JavaLaunchHelper is implemented in both /Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/bin/java (0x1018fc4c0) and /Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home/jre/lib/libinstrument.dylib (0x1019c34e0). One of the two will be used. Which one is undefined.
Sep 24, 2017 10:24:10 AM javafx.fxml.FXMLLoader$ValueElement processValue
WARNING: Loading FXML document with JavaFX API of version 8.0.111 by JavaFX runtime of version 8.0.31
Exception in Application start method
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:483)
at com.sun.javafx.application.LauncherImpl.launchApplicationWithArgs(LauncherImpl.java:363)
at com.sun.javafx.application.LauncherImpl.launchApplication(LauncherImpl.java:303)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:483)
at sun.launcher.LauncherHelper$FXHelper.main(LauncherHelper.java:767)
Caused by: java.lang.RuntimeException: Exception in Application start method
at com.sun.javafx.application.LauncherImpl.launchApplication1(LauncherImpl.java:875)
at com.sun.javafx.application.LauncherImpl.lambda$launchApplication$147(LauncherImpl.java:157)
at com.sun.javafx.application.LauncherImpl$$Lambda$49/1972439101.run(Unknown Source)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.IllegalAccessError: tried to access method com.sun.javafx.css.parser.CSSParser.<init>()V from class de.jensd.fx.glyphs.GlyphIcon
at de.jensd.fx.glyphs.GlyphIcon.<clinit>(GlyphIcon.java:49)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:408)
at java.lang.Class.newInstance(Class.java:438)
at sun.reflect.misc.ReflectUtil.newInstance(ReflectUtil.java:51)
at javafx.fxml.FXMLLoader$InstanceDeclarationElement.constructValue(FXMLLoader.java:1001)
at javafx.fxml.FXMLLoader$ValueElement.processStartElement(FXMLLoader.java:742)
at javafx.fxml.FXMLLoader.processStartElement(FXMLLoader.java:2701)
at javafx.fxml.FXMLLoader.loadImpl(FXMLLoader.java:2521)
at javafx.fxml.FXMLLoader.loadImpl(FXMLLoader.java:2435)
at javafx.fxml.FXMLLoader.loadImpl(FXMLLoader.java:3208)
at javafx.fxml.FXMLLoader.loadImpl(FXMLLoader.java:3169)
at javafx.fxml.FXMLLoader.loadImpl(FXMLLoader.java:3142)
at javafx.fxml.FXMLLoader.loadImpl(FXMLLoader.java:3118)
at javafx.fxml.FXMLLoader.loadImpl(FXMLLoader.java:3098)
at javafx.fxml.FXMLLoader.load(FXMLLoader.java:3091)
at ToolSuite.Main.start(Main.java:23)
at com.sun.javafx.application.LauncherImpl.lambda$launchApplication1$153(LauncherImpl.java:821)
at com.sun.javafx.application.LauncherImpl$$Lambda$52/29516901.run(Unknown Source)
at com.sun.javafx.application.PlatformImpl.lambda$runAndWait$166(PlatformImpl.java:323)
at com.sun.javafx.application.PlatformImpl$$Lambda$46/42768293.run(Unknown Source)
at com.sun.javafx.application.PlatformImpl.lambda$null$164(PlatformImpl.java:292)
at com.sun.javafx.application.PlatformImpl$$Lambda$48/311946107.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at com.sun.javafx.application.PlatformImpl.lambda$runLater$165(PlatformImpl.java:291)
at com.sun.javafx.application.PlatformImpl$$Lambda$47/1834188994.run(Unknown Source)
at com.sun.glass.ui.InvokeLaterDispatcher$Future.run(InvokeLaterDispatcher.java:95)
Exception running application ToolSuite.Main
Process finished with exit code 1
I cannot pin point why I am getting this problem. I have downloaded the library the usual way using Intellij as well.

The solution to your problem should be to use FontAwesome 8.4-SNAPSHOT.
As described in the following link https://bitbucket.org/Jerady/fontawesomefx/issues/13/illegalaccesserror-on-fontawesomeicon version 8.9 has this bug.
This is the correct dependency:
<dependency>
<groupId>de.jensd</groupId>
<artifactId>fontawesomefx</artifactId>
<version>8.4-snapshot</version>
</dependency>
Hope this helps!

OIM Custom ICF based connector throwing runtime exception

I have created one ICF based Flat file connector which uses REST web service to Read/write the data from file. I have used jersey implementation 1.6 to write the web service and the java client which will call that web service.
I am using stand alone java code for testing the CRUD functionality.It's giving exception at first line where I am initializing the jersey Client.
Client flatFileRestClient = Client.create();
I got to know that the error is because the connector server is not able to recognize the jersey implementation jars.So as per documentation of ICF connector i had put the jersey bundle jar in connector server/lib folder. I had restarted the connector server and invoke create operation but issue still exists.
I had also added the class path of custom jar in ConnectorServer.bat
file located in CONNECTOR_SERVER_HOME/bin. Still the issue persists.
Please find full stack trace of the exception thrown on eclipse console:
java.lang.RuntimeException: javax/ws/rs/ext/Providers
at org.identityconnectors.framework.impl.serializer.CommonObjectHandlers$17.createException(CommonObjectHandlers.java:301)
at org.identityconnectors.framework.impl.serializer.CommonObjectHandlers$ThrowableHandler.deserialize(CommonObjectHandlers.java:115)
at org.identityconnectors.framework.impl.serializer.binary.BinaryObjectDecoder$InternalDecoder.readObject(BinaryObjectDecoder.java:162)
at org.identityconnectors.framework.impl.serializer.binary.BinaryObjectDecoder.readObject(BinaryObjectDecoder.java:313)
at org.identityconnectors.framework.impl.serializer.binary.BinaryObjectDecoder.readObjectField(BinaryObjectDecoder.java:417)
at org.identityconnectors.framework.impl.serializer.MessageHandlers$5.deserialize(MessageHandlers.java:155)
at org.identityconnectors.framework.impl.serializer.binary.BinaryObjectDecoder$InternalDecoder.readObject(BinaryObjectDecoder.java:162)
at org.identityconnectors.framework.impl.serializer.binary.BinaryObjectDecoder.readObject(BinaryObjectDecoder.java:313)
at org.identityconnectors.framework.impl.api.remote.RemoteFrameworkConnection.readObject(RemoteFrameworkConnection.java:153)
at org.identityconnectors.framework.impl.api.remote.RemoteOperationInvocationHandler.invoke(RemoteOperationInvocationHandler.java:101)
at com.sun.proxy.$Proxy0.create(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.identityconnectors.framework.impl.api.DelegatingTimeoutProxy.invoke(DelegatingTimeoutProxy.java:107)
at com.sun.proxy.$Proxy0.create(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.identityconnectors.framework.impl.api.LoggingProxy.invoke(LoggingProxy.java:76)
at com.sun.proxy.$Proxy0.create(Unknown Source)
at org.identityconnectors.framework.impl.api.AbstractConnectorFacade.create(AbstractConnectorFacade.java:123)
at org.identityconnectors.flatfileconnector.test.TestOperations.create(TestOperations.java:37)
at org.identityconnectors.flatfileconnector.test.TestOperations.main(TestOperations.java:44)
Please below exceptions thrown on connector server:
Jun 06, 2016 5:19:13 PM org.identityconnectors.framework.server.impl.ConnectionL
istener processOperationRequest
SEVERE: javax/ws/rs/ext/Providers
java.lang.NoClassDefFoundError: javax/ws/rs/ext/Providers
at org.identityconnectors.flatfileconnector.restclient.FlatFileRestClient.<
init>(FlatFileRestClient.java:18)
at org.identityconnectors.flatfileconnector.FlatFileConnector.create(FlatFileConnector.java:85)
at org.identityconnectors.framework.impl.api.local.operations.CreateImpl
.create(CreateImpl.java:80)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.
java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAcces
sorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.identityconnectors.framework.impl.api.local.operations.ConnectorA
PIOperationRunnerProxy.invoke(ConnectorAPIOperationRunnerProxy.java:93)
at com.sun.proxy.$Proxy3.create(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.
java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAcces
sorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.identityconnectors.framework.impl.api.local.operations.ThreadClas
sLoaderManagerProxy.invoke(ThreadClassLoaderManagerProxy.java:107)
at com.sun.proxy.$Proxy3.create(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.
java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAcces
sorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.identityconnectors.framework.impl.api.DelegatingTimeoutProxy.invo
ke(DelegatingTimeoutProxy.java:107)
at com.sun.proxy.$Proxy3.create(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.
java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAcces
sorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.identityconnectors.framework.impl.api.LoggingProxy.invoke(Logging
Proxy.java:76)
at com.sun.proxy.$Proxy3.create(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.
java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAcces
sorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.identityconnectors.framework.server.impl.ConnectionProcessor.proc
essOperationRequest(ConnectionProcessor.java:287)
at org.identityconnectors.framework.server.impl.ConnectionProcessor.proc
essRequest(ConnectionProcessor.java:191)
at org.identityconnectors.framework.server.impl.ConnectionProcessor.run(
ConnectionProcessor.java:121)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.
java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor
.java:615)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.ClassNotFoundException: javax.ws.rs.ext.Providers
at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
... 37 more
Any help at the earliest would appreciate.

The problem was due to the REST API jars which i was using. I have de-compile the jersey-bundle-1.6.jar and found the javax.ws.rs.ext.Providers.class is not present in that jar. So i have downloaded the Java 6 complied version of the Jersey-bundler-1.16.jar

Exception on job execution (Websphere)

I am getting the following exception when I try to execute a query by the entity manager with jpa.
it seems I am with a jta configuration problem, but I am not sure.
I am using quartz with a java ee 5 application and I running in a webpshere server.
E org.hibernate.ejb.AbstractEntityManagerImpl handlePersistenceException Unable to mark for rollback on PersistenceException:
org.hibernate.HibernateException: javax.naming.ConfigurationException: A JNDI operation on a "java:" name cannot be completed because the server runtime is not able to associate the operation's thread with any J2EE application component.
This condition can occur when the JNDI client using the "java:" name is not executed on the thread of a server application request. Make sure that a J2EE application does not execute JNDI operations on "java:" names within static code blocks or in threads created by that J2EE application. Such code does not necessarily run on the thread of a server application request and therefore is not supported by JNDI operations on "java:" names. [Root exception is javax.naming.NameNotFoundException: Name comp/websphere not found in context "java:".]
at
org.hibernate.transaction.WebSphereExtendedJTATransactionLookup$TransactionManagerAdapter$TransactionAdapter.<init>(WebSphereExtendedJTATransactionLookup.java:188)
at org.hibernate.transaction.WebSphereExtendedJTATransactionLookup$TransactionManagerAdapter$TransactionAdapter.<init>(WebSphereExtendedJTATransactionLookup.java:178)
at org.hibernate.transaction.WebSphereExtendedJTATransactionLookup$TransactionManagerAdapter.getTransaction(WebSphereExtendedJTATransactionLookup.java:140)
at org.hibernate.ejb.transaction.JoinableCMTTransaction.isTransactionInProgress(JoinableCMTTransaction.java:64)
at org.hibernate.ejb.transaction.JoinableCMTTransaction.tryJoiningTransaction(JoinableCMTTransaction.java:78)
at org.hibernate.ejb.transaction.JoinableCMTTransactionFactory.isTransactionInProgress(JoinableCMTTransactionFactory.java:51)
at org.hibernate.jdbc.JDBCContext.isTransactionInProgress(JDBCContext.java:235)
at org.hibernate.jdbc.JDBCContext.registerSynchronizationIfPossible(JDBCContext.java:200)
at org.hibernate.impl.SessionImpl.checkTransactionSynchStatus(SessionImpl.java:2112)
at org.hibernate.impl.SessionImpl.getSessionFactory(SessionImpl.java:1853)
at org.hibernate.ejb.AbstractEntityManagerImpl.markAsRollback(AbstractEntityManagerImpl.java:1123)
at org.hibernate.ejb.AbstractEntityManagerImpl.handlePersistenceException(AbstractEntityManagerImpl.java:1296)
at org.hibernate.ejb.AbstractEntityManagerImpl.convert(AbstractEntityManagerImpl.java:1390)
at org.hibernate.ejb.AbstractEntityManagerImpl.convert(AbstractEntityManagerImpl.java:1317)
at org.hibernate.ejb.AbstractEntityManagerImpl.joinTransaction(AbstractEntityManagerImpl.java:1252)
at org.hibernate.ejb.AbstractEntityManagerImpl.postInit(AbstractEntityManagerImpl.java:168)
at org.hibernate.ejb.EntityManagerImpl.<init>(EntityManagerImpl.java:84)
at org.hibernate.ejb.EntityManagerFactoryImpl.createEntityManager(EntityManagerFactoryImpl.java:112)
at org.hibernate.ejb.EntityManagerFactoryImpl.createEntityManager(EntityManagerFactoryImpl.java:107)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:60)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:37)
at java.lang.reflect.Method.invoke(Method.java:611)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.invokeProxyMethod(AbstractEntityManagerFactoryBean.java:388)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean$ManagedEntityManagerFactoryInvocationHandler.invoke(AbstractEntityManagerFactoryBean.java:541)
at com.sun.proxy.$Proxy521.createEntityManager(Unknown Source)
at org.springframework.orm.jpa.SharedEntityManagerCreator$SharedEntityManagerInvocationHandler.invoke(SharedEntityManagerCreator.java:285)
at com.sun.proxy.$Proxy524.createQuery(Unknown Source)
at br.com.vr.platpedidos.infrastructure.pedido.persistence.PedidoORMRepositoryImpl.buscarReferencia(PedidoORMRepositoryImpl.java:44)
at br.com.vr.platpedidos.application.pedido.repository.PedidoRepositoryImpl.buscarModalidadeProdutoDoPedido(PedidoRepositoryImpl.java:29)
at br.com.vr.platpedidos.application.pedido.services.PedidoApplicationServiceImpl.obterModalidadeDeProdutoDoPedido(PedidoApplicationServiceImpl.java:42)
at br.com.vr.platpedidos.application.facade.PlatpedidosFacadeImpl.obterModalidadeDeProduto(PlatpedidosFacadeImpl.java:64)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:60)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:37)
at java.lang.reflect.Method.invoke(Method.java:611)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:317)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
at org.springframework.aop.aspectj.MethodInvocationProceedingJoinPoint.proceed(MethodInvocationProceedingJoinPoint.java:85)
at br.com.vr.platpedidos.infrastructure.exception.ExceptionLoggingAspect.logException(ExceptionLoggingAspect.java:14)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:60)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:37)
at java.lang.reflect.Method.invoke(Method.java:611)
at org.springframework.aop.aspectj.AbstractAspectJAdvice.invokeAdviceMethodWithGivenArgs(AbstractAspectJAdvice.java:621)
at org.springframework.aop.aspectj.AbstractAspectJAdvice.invokeAdviceMethod(AbstractAspectJAdvice.java:610)
at org.springframework.aop.aspectj.AspectJAroundAdvice.invoke(AspectJAroundAdvice.java:68)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:92)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:207)
at com.sun.proxy.$Proxy540.obterModalidadeDeProduto(Unknown Source)
at br.com.vr.platpedidos.orquestracao.infrastructure.PlataformaDePedidosGateway.obterModalidadeDeProduto(PlataformaDePedidosGateway.java:60)
at br.com.vr.platpedidos.orquestracao.application.OrquestracaoApplicationServiceImpl.importarArquivosDePedido(OrquestracaoApplicationServiceImpl.java:40)
at br.com.vr.platpedidos.orquestracao.facade.OrquestracaoFacadeImpl.importarArquivosDePedido(OrquestracaoFacadeImpl.java:16)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:60)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:37)
at java.lang.reflect.Method.invoke(Method.java:611)
at org.springframework.util.MethodInvoker.invoke(MethodInvoker.java:269)
at org.springframework.scheduling.quartz.MethodInvokingJobDetailFactoryBean$MethodInvokingJob.executeInternal(MethodInvokingJobDetailFactoryBean.java:257)
at org.springframework.scheduling.quartz.QuartzJobBean.execute(QuartzJobBean.java:75)
at org.quartz.core.JobRunShell.run(JobRunShell.java:202)
at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:573)

I've just found the answer in the following post:
http://gybas.com/2014/quartz-websphere-spring/

You have detailed answer in the error message and the stack trace:
ConfigurationException: A JNDI operation on a "java:" name cannot be
completed because the server runtime is not able to associate the
operation's thread with any J2EE application component. This
condition can occur when the JNDI client using the "java:" name is not
executed on the thread of a server application request.
And below:
org.quartz.core.JobRunShell.run(JobRunShell.java:202) at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:573)
Either replace quartz with for example ejbTimers or managedThreads if you are on WebSphere Liberty, or change the JNDI to global name.
Using quartz is not recommended in Java EE applications, since it creates unmanaged threads.

Weird hibernate reference error, however it is not added as a library

I am getting the following error:
Exception in Application constructor
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:483)
at com.sun.javafx.application.LauncherImpl.launchApplicationWithArgs(LauncherImpl.java:367)
at com.sun.javafx.application.LauncherImpl.launchApplication(LauncherImpl.java:305)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:483)
at sun.launcher.LauncherHelper$FXHelper.main(LauncherHelper.java:767)
Caused by: java.lang.RuntimeException: Unable to construct Application instance: class StartUp
at com.sun.javafx.application.LauncherImpl.launchApplication1(LauncherImpl.java:884)
at com.sun.javafx.application.LauncherImpl.access$000(LauncherImpl.java:56)
at com.sun.javafx.application.LauncherImpl$1.run(LauncherImpl.java:158)
at java.lang.Thread.run(Thread.java:744)
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:408)
at com.sun.javafx.application.LauncherImpl$7.run(LauncherImpl.java:791)
at com.sun.javafx.application.PlatformImpl$7.run(PlatformImpl.java:335)
at com.sun.javafx.application.PlatformImpl$6$1.run(PlatformImpl.java:301)
at com.sun.javafx.application.PlatformImpl$6$1.run(PlatformImpl.java:298)
at java.security.AccessController.doPrivileged(Native Method)
at com.sun.javafx.application.PlatformImpl$6.run(PlatformImpl.java:298)
at com.sun.glass.ui.InvokeLaterDispatcher$Future.run(InvokeLaterDispatcher.java:95)
at com.sun.glass.ui.win.WinApplication._runLoop(Native Method)
at com.sun.glass.ui.win.WinApplication.access$300(WinApplication.java:39)
at com.sun.glass.ui.win.WinApplication$4$1.run(WinApplication.java:112)
... 1 more
Caused by: java.lang.NoClassDefFoundError: org/hibernate/Session
at gui.GraphicApplication.<init>(GraphicApplication.java:28)
at StartUp.<init>(StartUp.java:26)
... 15 more
Caused by: java.lang.ClassNotFoundException: org.hibernate.Session
at java.net.URLClassLoader$1.run(URLClassLoader.java:372)
at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:360)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
... 17 more
Exception running application StartUp
However i am not even using the Hibernate library, i am using JPA, i tried searching for "Session", "hibernate" and other strings but i can't find any of those and yet it is throwing this error.
These are the libraries i am currently using:
I was using hibernate before but i had to use JPA, so i removed everything that had to do with Hibernate.
The stacktrace is referencing to some of my files but nothing on those lines has anything to do with database management.

Have you added Hibernate JAR's to the lib directory of your server by any chance?

Well the stack trace says clear enough that "gui.GraphicApplication.(GraphicApplication.java:28)" is referencing it, so look at that and fix it?