Develop Reference

Hbase doesn't work well with spark-submit

I have an app that does some work and at the end it needs to read some file from hdfs and store it into hbase. The app runs when using master local with no issue using apache spark, but when I run it using spark-submit it doesn't work anymore,I get a fail.
The command line code is :
./bin/spark-submit --packages org.apache.spark:spark-avro_2.11:2.4.0 pathjar
And the error that I get is:
Java.io.IOException: java.lang.reflect.InvocationTargetException
at org.apache.hadoop.hbase.client.ConnectionFactory.createConnection(ConnectionFactory.java:240)
at org.apache.hadoop.hbase.client.ConnectionFactory.createConnection(ConnectionFactory.java:218)
at org.apache.hadoop.hbase.client.ConnectionFactory.createConnection(ConnectionFactory.java:119)
at org.apache.hadoop.hbase.client.HBaseAdmin.checkHBaseAvailable(HBaseAdmin.java:3207)
at utils.HBaseClient.getConnection(HBaseClient.java:63)
at utils.HBaseClient.exists(HBaseClient.java:224)
at utils.HBaseUtils.createTable(HBaseUtils.java:201)
at utils.HBaseUtils.execute(HBaseUtils.java:86)
at Query1.getResponse(Query1.java:43)
at Main.main(Main.java:138)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.spark.deploy.JavaMainApplication.start(SparkApplication.scala:52)
at org.apache.spark.deploy.SparkSubmit.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:849)
at org.apache.spark.deploy.SparkSubmit.doRunMain$1(SparkSubmit.scala:167)
at org.apache.spark.deploy.SparkSubmit.submit(SparkSubmit.scala:195)
at org.apache.spark.deploy.SparkSubmit.doSubmit(SparkSubmit.scala:86)
at org.apache.spark.deploy.SparkSubmit$$anon$2.doSubmit(SparkSubmit.scala:924)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:933)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.hadoop.hbase.client.ConnectionFactory.createConnection(ConnectionFactory.java:238)
... 21 more
Caused by: java.lang.RuntimeException: Could not create interface org.apache.hadoop.hbase.zookeeper.MetricsZooKeeperSource Is the hadoop compatibility jar on the classpath?
at org.apache.hadoop.hbase.CompatibilitySingletonFactory.getInstance(CompatibilitySingletonFactory.java:75)
at org.apache.hadoop.hbase.zookeeper.MetricsZooKeeper.<init>(MetricsZooKeeper.java:38)
at org.apache.hadoop.hbase.zookeeper.RecoverableZooKeeper.<init>(RecoverableZooKeeper.java:130)
at org.apache.hadoop.hbase.zookeeper.ZKUtil.connect(ZKUtil.java:143)
at org.apache.hadoop.hbase.zookeeper.ZooKeeperWatcher.<init>(ZooKeeperWatcher.java:181)
at org.apache.hadoop.hbase.zookeeper.ZooKeeperWatcher.<init>(ZooKeeperWatcher.java:155)
at org.apache.hadoop.hbase.client.ZooKeeperKeepAliveConnection.<init>(ZooKeeperKeepAliveConnection.java:43)
at org.apache.hadoop.hbase.client.ConnectionManager$HConnectionImplementation.getKeepAliveZooKeeperWatcher(ConnectionManager.java:1737)
at org.apache.hadoop.hbase.client.ZooKeeperRegistry.getClusterId(ZooKeeperRegistry.java:104)
at org.apache.hadoop.hbase.client.ConnectionManager$HConnectionImplementation.retrieveClusterId(ConnectionManager.java:945)
at org.apache.hadoop.hbase.client.ConnectionManager$HConnectionImplementation.<init>(ConnectionManager.java:721)
... 26 more
Caused by: java.util.ServiceConfigurationError: org.apache.hadoop.hbase.zookeeper.MetricsZooKeeperSource: Provider org.apache.hadoop.hbase.zookeeper.MetricsZooKeeperSourceImpl could not be instantiated
at java.util.ServiceLoader.fail(ServiceLoader.java:232)
at java.util.ServiceLoader.access$100(ServiceLoader.java:185)
at java.util.ServiceLoader$LazyIterator.nextService(ServiceLoader.java:384)
at java.util.ServiceLoader$LazyIterator.next(ServiceLoader.java:404)
at java.util.ServiceLoader$1.next(ServiceLoader.java:480)
at org.apache.hadoop.hbase.CompatibilitySingletonFactory.getInstance(CompatibilitySingletonFactory.java:59)
... 36 more
Caused by: java.lang.IllegalAccessError: tried to access class org.apache.hadoop.metrics2.lib.MetricsInfoImpl from class org.apache.hadoop.metrics2.lib.DynamicMetricsRegistry
at org.apache.hadoop.metrics2.lib.DynamicMetricsRegistry.newGauge(DynamicMetricsRegistry.java:139)
at org.apache.hadoop.hbase.zookeeper.MetricsZooKeeperSourceImpl.<init>(MetricsZooKeeperSourceImpl.java:59)
at org.apache.hadoop.hbase.zookeeper.MetricsZooKeeperSourceImpl.<init>(MetricsZooKeeperSourceImpl.java:51)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at java.lang.Class.newInstance(Class.java:442)
at java.util.ServiceLoader$LazyIterator.nextService(ServiceLoader.java:380)
... 39 more
Creating table...
java.io.IOException: java.lang.reflect.InvocationTargetException
at org.apache.hadoop.hbase.client.ConnectionFactory.createConnection(ConnectionFactory.java:240)
at org.apache.hadoop.hbase.client.ConnectionFactory.createConnection(ConnectionFactory.java:218)
at org.apache.hadoop.hbase.client.ConnectionFactory.createConnection(ConnectionFactory.java:119)
at org.apache.hadoop.hbase.client.HBaseAdmin.checkHBaseAvailable(HBaseAdmin.java:3207)
at utils.HBaseClient.getConnection(HBaseClient.java:63)
at utils.HBaseClient.createTable(HBaseClient.java:87)
at utils.HBaseUtils.createTable(HBaseUtils.java:203)
at utils.HBaseUtils.execute(HBaseUtils.java:86)
at Query1.getResponse(Query1.java:43)
at Main.main(Main.java:138)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.spark.deploy.JavaMainApplication.start(SparkApplication.scala:52)
at org.apache.spark.deploy.SparkSubmit.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:849)
at org.apache.spark.deploy.SparkSubmit.doRunMain$1(SparkSubmit.scala:167)
at org.apache.spark.deploy.SparkSubmit.submit(SparkSubmit.scala:195)
at org.apache.spark.deploy.SparkSubmit.doSubmit(SparkSubmit.scala:86)
at org.apache.spark.deploy.SparkSubmit$$anon$2.doSubmit(SparkSubmit.scala:924)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:933)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.hadoop.hbase.client.ConnectionFactory.createConnection(ConnectionFactory.java:238)
... 21 more
Caused by: java.lang.RuntimeException: Could not create interface org.apache.hadoop.hbase.zookeeper.MetricsZooKeeperSource Is the hadoop compatibility jar on the classpath?
at org.apache.hadoop.hbase.CompatibilitySingletonFactory.getInstance(CompatibilitySingletonFactory.java:75)
at org.apache.hadoop.hbase.zookeeper.MetricsZooKeeper.<init>(MetricsZooKeeper.java:38)
at org.apache.hadoop.hbase.zookeeper.RecoverableZooKeeper.<init>(RecoverableZooKeeper.java:130)
at org.apache.hadoop.hbase.zookeeper.ZKUtil.connect(ZKUtil.java:143)
at org.apache.hadoop.hbase.zookeeper.ZooKeeperWatcher.<init>(ZooKeeperWatcher.java:181)
at org.apache.hadoop.hbase.zookeeper.ZooKeeperWatcher.<init>(ZooKeeperWatcher.java:155)
at org.apache.hadoop.hbase.client.ZooKeeperKeepAliveConnection.<init>(ZooKeeperKeepAliveConnection.java:43)
at org.apache.hadoop.hbase.client.ConnectionManager$HConnectionImplementation.getKeepAliveZooKeeperWatcher(ConnectionManager.java:1737)
at org.apache.hadoop.hbase.client.ZooKeeperRegistry.getClusterId(ZooKeeperRegistry.java:104)
at org.apache.hadoop.hbase.client.ConnectionManager$HConnectionImplementation.retrieveClusterId(ConnectionManager.java:945)
at org.apache.hadoop.hbase.client.ConnectionManager$HConnectionImplementation.<init>(ConnectionManager.java:721)
... 26 more
Caused by: java.util.ServiceConfigurationError: org.apache.hadoop.hbase.zookeeper.MetricsZooKeeperSource: Provider org.apache.hadoop.hbase.zookeeper.MetricsZooKeeperSourceImpl could not be instantiated
at java.util.ServiceLoader.fail(ServiceLoader.java:232)
at java.util.ServiceLoader.access$100(ServiceLoader.java:185)
at java.util.ServiceLoader$LazyIterator.nextService(ServiceLoader.java:384)
at java.util.ServiceLoader$LazyIterator.next(ServiceLoader.java:404)
at java.util.ServiceLoader$1.next(ServiceLoader.java:480)
at org.apache.hadoop.hbase.CompatibilitySingletonFactory.getInstance(CompatibilitySingletonFactory.java:59)
... 36 more
Caused by: org.apache.hadoop.metrics2.MetricsException: Metrics source ZooKeeper,sub=ZOOKEEPER already exists!
at org.apache.hadoop.metrics2.lib.DefaultMetricsSystem.newSourceName(DefaultMetricsSystem.java:144)
at org.apache.hadoop.metrics2.lib.DefaultMetricsSystem.sourceName(DefaultMetricsSystem.java:117)
at org.apache.hadoop.metrics2.impl.MetricsSystemImpl.register(MetricsSystemImpl.java:229)
at org.apache.hadoop.hbase.metrics.BaseSourceImpl.<init>(BaseSourceImpl.java:115)
at org.apache.hadoop.hbase.zookeeper.MetricsZooKeeperSourceImpl.<init>(MetricsZooKeeperSourceImpl.java:56)
at org.apache.hadoop.hbase.zookeeper.MetricsZooKeeperSourceImpl.<init>(MetricsZooKeeperSourceImpl.java:51)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at java.lang.Class.newInstance(Class.java:442)
at java.util.ServiceLoader$LazyIterator.nextService(ServiceLoader.java:380)
... 39 more
Hope someone can explain me what's the probblem, thanks in advice.

java.lang.RuntimeException: Could not create interface org.apache.hadoop.hbase.zookeeper.MetricsZooKeeperSource Is the hadoop compatibility jar on the classpath
Its clear indication of version mismatch of hadoop jar files.
it is working in local from your ide since you have the appropriate jar in your classpath.
where as cluster or client modes of spark-submit it doesnt.
package all your application dependencies in a single jar which are in your local(since it works) and do a spark-submit
How to Debug : you can print all jars in local like this in
scala
def urlsinclasspath(cl: ClassLoader): Array[java.net.URL] = cl match {
case null => Array()
case u: java.net.URLClassLoader => u.getURLs() ++ urlses(cl.getParent)
case _ => urlsinclasspath(cl.getParent)
}
val urls = urlsinclasspath(getClass.getClassLoader).foreach(println)
java :
import java.net.URL;
import java.net.URLClassLoader;
public static void urlsInClasspath () {
ClassLoader cl = ClassLoader.getSystemClassLoader();
URL[] urls = ((URLClassLoader)cl).getURLs();
for(URL url: urls){
System.out.println(url.getFile());
}
}

Getting java.lang.reflect.InvocationTargetException in Ant Script for WsImport

I am trying to use WSImport2 to create some bean classes from wsdl files. But I get the errors
H:\Workspace\common-build.xml:745: java.lang.Error: java.lang.reflect.InvocationTargetException
at com.sun.tools.xjc.reader.Ring.get(Ring.java:113)
at com.sun.tools.xjc.reader.xmlschema.BGMBuilder.<init>(BGMBuilder.java:147)
at com.sun.tools.xjc.reader.xmlschema.BGMBuilder.build(BGMBuilder.java:117)
at com.sun.tools.xjc.ModelLoader.annotateXMLSchema(ModelLoader.java:425)
at com.sun.tools.xjc.api.impl.s2j.SchemaCompilerImpl.bind(SchemaCompilerImpl.java:277)
at com.sun.tools.xjc.api.impl.s2j.SchemaCompilerImpl.bind(SchemaCompilerImpl.java:95)
at com.sun.tools.ws.processor.modeler.wsdl.JAXBModelBuilder.bind(JAXBModelBuilder.java:112)
at com.sun.tools.ws.processor.modeler.wsdl.WSDLModeler.buildJAXBModel(WSDLModeler.java:2268)
at com.sun.tools.ws.processor.modeler.wsdl.WSDLModeler.internalBuildModel(WSDLModeler.java:168)
at com.sun.tools.ws.processor.modeler.wsdl.WSDLModeler.buildModel(WSDLModeler.java:111)
at com.sun.tools.ws.wscompile.WsimportTool.buildWsdlModel(WsimportTool.java:414)
at com.sun.tools.ws.wscompile.WsimportTool.run(WsimportTool.java:175)
at com.sun.tools.ws.wscompile.WsimportTool.run(WsimportTool.java:153)
at com.sun.tools.ws.ant.WsImportBase.runInVm(WsImportBase.java:569)
at com.sun.tools.ws.ant.WsTask2.execute(WsTask2.java:457)
at com.sun.tools.ws.ant.WsImportBase.execute(WsImportBase.java:552)
at com.sun.tools.ws.ant.WsImport2.execute(WsImport2.java:23)
at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:292)
at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:99)
at org.apache.tools.ant.Task.perform(Task.java:350)
at org.apache.tools.ant.Target.execute(Target.java:449)
at org.apache.tools.ant.Target.performTasks(Target.java:470)
at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1388)
at org.apache.tools.ant.helper.SingleCheckExecutor.executeTargets(SingleCheckExecutor.java:36)
at org.apache.tools.ant.Project.executeTargets(Project.java:1251)
at org.apache.tools.ant.taskdefs.Ant.execute(Ant.java:437)
at org.apache.tools.ant.taskdefs.SubAnt.execute(SubAnt.java:306)
at org.apache.tools.ant.taskdefs.SubAnt.execute(SubAnt.java:225)
at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:292)
at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:99)
at org.apache.tools.ant.Task.perform(Task.java:350)
at org.apache.tools.ant.Target.execute(Target.java:449)
at org.apache.tools.ant.Target.performTasks(Target.java:470)
at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1388)
at org.apache.tools.ant.Project.executeTarget(Project.java:1361)
at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:41)
at org.apache.tools.ant.Project.executeTargets(Project.java:1251)
at org.apache.tools.ant.Main.runBuild(Main.java:834)
at org.apache.tools.ant.Main.startAnt(Main.java:223)
at org.apache.tools.ant.launch.Launcher.run(Launcher.java:284)
at org.apache.tools.ant.launch.Launcher.main(Launcher.java:101)
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at com.sun.tools.xjc.reader.Ring.get(Ring.java:102)
... 46 more
Caused by: java.lang.Error: java.lang.reflect.InvocationTargetException
at com.sun.tools.xjc.reader.Ring.get(Ring.java:113)
at com.sun.tools.xjc.reader.xmlschema.BindingComponent.getClassSelector(BindingComponent.java:65)
at com.sun.tools.xjc.reader.xmlschema.ColorBinder.<init>(ColorBinder.java:62)
at com.sun.tools.xjc.reader.xmlschema.BindGreen.<init>(BindGreen.java:63)
... 51 more
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at com.sun.tools.xjc.reader.Ring.get(Ring.java:102)
... 54 more
Caused by: java.lang.NoSuchFieldError: REFLECTION
at com.sun.tools.xjc.model.nav.NavigatorImpl.getBaseClass(NavigatorImpl.java:74)
at com.sun.tools.xjc.model.nav.NavigatorImpl.getBaseClass(NavigatorImpl.java:59)
at com.sun.xml.bind.v2.model.core.Adapter.<init>(Adapter.java:88)
at com.sun.tools.xjc.model.CAdapter.<init>(CAdapter.java:82)
at com.sun.tools.xjc.model.TypeUseFactory.adapt(TypeUseFactory.java:95)
at com.sun.tools.xjc.model.CBuiltinLeafInfo.makeAdapted(CBuiltinLeafInfo.java:192)
at com.sun.tools.xjc.model.CBuiltinLeafInfo.<clinit>(CBuiltinLeafInfo.java:387)
at com.sun.tools.xjc.reader.xmlschema.SimpleTypeBuilder.<clinit>(SimpleTypeBuilder.java:897)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at com.sun.tools.xjc.reader.Ring.get(Ring.java:102)
at com.sun.tools.xjc.reader.xmlschema.DefaultClassBinder.<init>(DefaultClassBinder.java:98)
at com.sun.tools.xjc.reader.xmlschema.ClassSelector.<init>(ClassSelector.java:214)
... 59 more
Total time: 11 seconds
There are a lot more lines in the stack trace. If needed I will upload it. I have most of the JAX jars in my classpath.
The line causing the problem, is:
<wsimport wsdl="${build.dir}/src/${wsdl.file}" destdir="build" wsdlLocation="file:/WEB-INF/wsdl/${wsdl.file}" failonerror="true" verbose="true">
<depends dir="${build.dir}/src" includes="*.xsd" />
<produces dir="${lib.dir}" includes="${webservice.name}${webservice.component}WSBeans.jar"/>
</wsimport>
I am having issues uploading the whole stack trace, but I am only filling this section up to make the question post!

It turns out that it was a mismatch in the JAXB XJC jar version. It mismatched with the JAXB Impl and Core jars.
The two jars were:
jaxb-core-2.3.0.1.jar
jaxb-impl-2.3.0.1.jar
While my XJC was:
jaxb-xjc-2.2.7
Upgraded it to the same version and now it works fine.

How to connect Pentaho 6.0 to Hadoop-Hive

I am trying to connect Pentaho to Hive, so that I can run Hive queries through Pentaho.
I have installed Pentaho 6.0 on my Windows 7 (Professional 64bit).
I have configured Hadoop on "Bare metal server". The details of Hadoop system are as follows:
Apache Hadoop V 2.6
Hive v 1.1
YARN
I tried connecting to Pentaho by using connection type:Hadoop-Hive 2, Database name:default and Port No:10000. I have added Hive JDBC jar file from this web link: http://mvnrepository.com/artifact/org.apache.hive/hive-jdbc/1.1.0. At the end when I try to connect, I get the following errors:
Error connecting to database [Hive_connect] : org.pentaho.di.core.exception.KettleDatabaseException:
Error occurred while trying to connect to the database
Error connecting to database: (using class org.apache.hive.jdbc.HiveDriver)
org/apache/hive/service/cli/thrift/TCLIService$Iface
org.pentaho.di.core.exception.KettleDatabaseException:
Error occurred while trying to connect to the database
Error connecting to database: (using class org.apache.hive.jdbc.HiveDriver)
org/apache/hive/service/cli/thrift/TCLIService$Iface
at org.pentaho.di.core.database.Database.normalConnect(Database.java:459)
at org.pentaho.di.core.database.Database.connect(Database.java:357)
at org.pentaho.di.core.database.Database.connect(Database.java:328)
at org.pentaho.di.core.database.Database.connect(Database.java:318)
at org.pentaho.di.core.database.DatabaseFactory.getConnectionTestReport(DatabaseFactory.java:80)
at org.pentaho.di.core.database.DatabaseMeta.testConnection(DatabaseMeta.java:2734)
at org.pentaho.ui.database.event.DataHandler.testDatabaseConnection(DataHandler.java:588)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.pentaho.ui.xul.impl.AbstractXulDomContainer.invoke(AbstractXulDomContainer.java:313)
at org.pentaho.ui.xul.impl.AbstractXulComponent.invoke(AbstractXulComponent.java:157)
at org.pentaho.ui.xul.impl.AbstractXulComponent.invoke(AbstractXulComponent.java:141)
at org.pentaho.ui.xul.swt.tags.SwtButton.access$500(SwtButton.java:43)
at org.pentaho.ui.xul.swt.tags.SwtButton$4.widgetSelected(SwtButton.java:136)
at org.eclipse.swt.widgets.TypedListener.handleEvent(Unknown Source)
at org.eclipse.swt.widgets.EventTable.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Widget.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Display.runDeferredEvents(Unknown Source)
at org.eclipse.swt.widgets.Display.readAndDispatch(Unknown Source)
at org.eclipse.jface.window.Window.runEventLoop(Window.java:820)
at org.eclipse.jface.window.Window.open(Window.java:796)
at org.pentaho.ui.xul.swt.tags.SwtDialog.show(SwtDialog.java:389)
at org.pentaho.ui.xul.swt.tags.SwtDialog.show(SwtDialog.java:318)
at org.pentaho.di.ui.core.database.dialog.XulDatabaseDialog.open(XulDatabaseDialog.java:116)
at org.pentaho.di.ui.core.database.dialog.DatabaseDialog.open(DatabaseDialog.java:60)
at org.pentaho.di.ui.spoon.delegates.SpoonDBDelegate.newConnection(SpoonDBDelegate.java:470)
at org.pentaho.di.ui.spoon.delegates.SpoonDBDelegate.newConnection(SpoonDBDelegate.java:457)
at org.pentaho.di.ui.spoon.Spoon.newConnection(Spoon.java:8750)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.pentaho.ui.xul.impl.AbstractXulDomContainer.invoke(AbstractXulDomContainer.java:313)
at org.pentaho.ui.xul.impl.AbstractXulComponent.invoke(AbstractXulComponent.java:157)
at org.pentaho.ui.xul.impl.AbstractXulComponent.invoke(AbstractXulComponent.java:141)
at org.pentaho.ui.xul.jface.tags.JfaceMenuitem.access$100(JfaceMenuitem.java:43)
at org.pentaho.ui.xul.jface.tags.JfaceMenuitem$1.run(JfaceMenuitem.java:106)
at org.eclipse.jface.action.Action.runWithEvent(Action.java:498)
at org.eclipse.jface.action.ActionContributionItem.handleWidgetSelection(ActionContributionItem.java:545)
at org.eclipse.jface.action.ActionContributionItem.access$2(ActionContributionItem.java:490)
at org.eclipse.jface.action.ActionContributionItem$5.handleEvent(ActionContributionItem.java:402)
at org.eclipse.swt.widgets.EventTable.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Widget.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Display.runDeferredEvents(Unknown Source)
at org.eclipse.swt.widgets.Display.readAndDispatch(Unknown Source)
at org.pentaho.di.ui.spoon.Spoon.readAndDispatch(Spoon.java:1339)
at org.pentaho.di.ui.spoon.Spoon.waitForDispose(Spoon.java:7939)
at org.pentaho.di.ui.spoon.Spoon.start(Spoon.java:9214)
at org.pentaho.di.ui.spoon.Spoon.main(Spoon.java:653)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.pentaho.commons.launcher.Launcher.main(Launcher.java:92)
Caused by: org.pentaho.di.core.exception.KettleDatabaseException:
Error connecting to database: (using class org.apache.hive.jdbc.HiveDriver)
org/apache/hive/service/cli/thrift/TCLIService$Iface
at org.pentaho.di.core.database.Database.connectUsingClass(Database.java:574)
at org.pentaho.di.core.database.Database.normalConnect(Database.java:443)
... 55 more
Caused by: java.lang.NoClassDefFoundError: org/apache/hive/service/cli/thrift/TCLIService$Iface
at org.apache.hive.jdbc.HiveDriver.connect(HiveDriver.java:105)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:247)
at org.pentaho.di.core.database.Database.connectUsingClass(Database.java:554)
... 56 more
Caused by: java.lang.ClassNotFoundException: org.apache.hive.service.cli.thrift.TCLIService$Iface
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
... 60 more

There should be a JDBC Driver for Hive and you can use it to connect Penthao to your Hive Storage. It should be as simple as to register a new database instance.
Have a look at this link: HiveClient
Get the JDBC Driver for Hive if it isn't available
Follow the instructions to install the JDBC Driver Penthao Description
Configure a new Hive Database Connection

hive metastore and connection refused errors for getting into hive shell

I am trying to get into hive shell but I get the following errors:
ubuntu#group-3-vm1:~$ cd $HIVE_HOME
ubuntu#group-3-vm1:~/software/hive-1.2.1$
ubuntu#group-3-vm1:~/software/hive-1.2.1$ hive
Logging initialized using configuration in jar:file:/home/ubuntu/software/hive-1.2.1/lib/hive-common-1.2.1.jar!/hive-log4j.properties
Hive history file=/tmp/ubuntu/hive_job_log_6e94701d-7385-4044-a110-9630159476c2_1449551388.txt
SLF4J: Class path contains multiple SLF4J bindings.
SLF4J: Found binding in [jar:file:/home/ubuntu/software/tez-0.7.1-SNAPSHOT-minimal/lib/slf4j-log4j12-1.7.5.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: Found binding in [jar:file:/home/ubuntu/software/hadoop-2.6.0/share/hadoop/common/lib/slf4j-log4j12-1.7.5.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation.
SLF4J: Actual binding is of type [org.slf4j.impl.Log4jLoggerFactory]
Exception in thread "main" java.lang.RuntimeException: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient
at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:522)
at org.apache.hadoop.hive.cli.CliDriver.run(CliDriver.java:677)
at org.apache.hadoop.hive.cli.CliDriver.main(CliDriver.java:621)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.hadoop.util.RunJar.run(RunJar.java:221)
at org.apache.hadoop.util.RunJar.main(RunJar.java:136)
Caused by: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient
at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1523)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:86)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:132)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:104)
at org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:3005)
at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:3024)
at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:503)
... 8 more
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1521)
... 14 more
Caused by: javax.jdo.JDOFatalDataStoreException: Unable to open a test connection to the given database. JDBC url = jdbc:mysql://10.0.1.31:3306/metastore?createDatabaseIfNotExist=true, username = hive. Terminating connection pool (set lazyInit to true if you expect to start your database after your app). Original Exception: ------
com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure
The last packet sent successfully to the server was 0 milliseconds ago. The driver has not received any packets from the server.
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1117)
at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:350)
at com.mysql.jdbc.ConnectionImpl.coreConnect(ConnectionImpl.java:2408)
at com.mysql.jdbc.ConnectionImpl.connectOneTryOnly(ConnectionImpl.java:2445)
at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2230)
at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:813)
at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:47)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:399)
at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:334)
at java.sql.DriverManager.getConnection(DriverManager.java:571)
at java.sql.DriverManager.getConnection(DriverManager.java:187)
at com.jolbox.bonecp.BoneCP.obtainRawInternalConnection(BoneCP.java:361)
at com.jolbox.bonecp.BoneCP.<init>(BoneCP.java:416)
at com.jolbox.bonecp.BoneCPDataSource.getConnection(BoneCPDataSource.java:120)
at org.datanucleus.store.rdbms.ConnectionFactoryImpl$ManagedConnectionImpl.getConnection(ConnectionFactoryImpl.java:501)
at org.datanucleus.store.rdbms.RDBMSStoreManager.<init>(RDBMSStoreManager.java:298)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.datanucleus.plugin.NonManagedPluginRegistry.createExecutableExtension(NonManagedPluginRegistry.java:631)
at org.datanucleus.plugin.PluginManager.createExecutableExtension(PluginManager.java:301)
at org.datanucleus.NucleusContext.createStoreManagerForProperties(NucleusContext.java:1187)
at org.datanucleus.NucleusContext.initialise(NucleusContext.java:356)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.freezeConfiguration(JDOPersistenceManagerFactory.java:775)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.createPersistenceManagerFactory(JDOPersistenceManagerFactory.java:333)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.getPersistenceManagerFactory(JDOPersistenceManagerFactory.java:202)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at javax.jdo.JDOHelper$16.run(JDOHelper.java:1965)
at java.security.AccessController.doPrivileged(Native Method)
at javax.jdo.JDOHelper.invoke(JDOHelper.java:1960)
at javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1166)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701)
at org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:365)
at org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:394)
at org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:291)
at org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:258)
at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:73)
at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133)
at org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:57)
at org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:66)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:593)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:571)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:624)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:461)
at org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:66)
at org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:72)
at org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5762)
at org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:199)
at org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient.<init>(SessionHiveMetaStoreClient.java:74)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1521)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:86)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:132)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:104)
at org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:3005)
at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:3024)
at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:503)
at org.apache.hadoop.hive.cli.CliDriver.run(CliDriver.java:677)
at org.apache.hadoop.hive.cli.CliDriver.main(CliDriver.java:621)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.hadoop.util.RunJar.run(RunJar.java:221)
at org.apache.hadoop.util.RunJar.main(RunJar.java:136)
Caused by: java.net.ConnectException: Connection refused
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:339)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:200)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:182)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:579)
at java.net.Socket.connect(Socket.java:528)
at java.net.Socket.<init>(Socket.java:425)
at java.net.Socket.<init>(Socket.java:241)
at com.mysql.jdbc.StandardSocketFactory.connect(StandardSocketFactory.java:259)
at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:300)
... 76 more
------
NestedThrowables:
java.sql.SQLException: Unable to open a test connection to the given database. JDBC url = jdbc:mysql://10.0.1.31:3306/metastore?createDatabaseIfNotExist=true, username = hive. Terminating connection pool (set lazyInit to true if you expect to start your database after your app). Original Exception: ------
com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure
The last packet sent successfully to the server was 0 milliseconds ago. The driver has not received any packets from the server.
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1117)
at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:350)
at com.mysql.jdbc.ConnectionImpl.coreConnect(ConnectionImpl.java:2408)
at com.mysql.jdbc.ConnectionImpl.connectOneTryOnly(ConnectionImpl.java:2445)
at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2230)
at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:813)
at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:47)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)

Firstly, The error key as following:
Unable to instantiate
org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient at
org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:522).
Have some solution for this error:
Check your configuration file hive-site.xml, you must be ensure some permission valid for file or directory paths.
delete metastore_db directory(if you metastore_db have not important information)
re-run hive shell
Note: you must be ensure hive-site.xml enable to access by hive process.

I got the same error 1st.
What I did was in the /usr/local/hive/conf/ there is a property named hive-log4j2.properties.template. I just renamed it to hive-log4j2.properties, since your hive logs into this property.
Logging initialized using configuration in file:/usr/local/hive/conf/hive-log4j2.properties
I've also deleted the metastore_db directory.
Finally, when I run "HIVE", I get this exception.
I've fixed this exception by removing the (derby database) contents in the "metastore_db"
in,
/usr/local/hive/bin/metastore_db/
sudo rm -rf *
After cleaning the old schema, I reinitializes with:
/usr/local/hive/bin/
$schematool -initSchema -dbType derby
Your /bin directory may vary according to your hive path setup.

Strange Error using Hibernate with MySQL in Java over JDBC

I get the following exception after my program proceeding database oparations for around one minute:
WARN : org.hibernate.util.JDBCExceptionReporter - SQL Error: 0, SQLState: 08S01
ERROR: org.hibernate.util.JDBCExceptionReporter - Communications link failure
The last packet sent successfully to the server was 0 milliseconds ago. The driver has not received any packets from the server.
org.springframework.dao.DataAccessResourceFailureException: Cannot open connection; nested exception is org.hibernate.exception.JDBCConnectionException: Cannot open connection
at org.springframework.orm.hibernate3.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:631)
at org.springframework.orm.jpa.vendor.HibernateJpaDialect.translateExceptionIfPossible(HibernateJpaDialect.java:104)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.translateExceptionIfPossible(AbstractEntityManagerFactoryBean.java:403)
at org.springframework.dao.support.ChainedPersistenceExceptionTranslator.translateExceptionIfPossible(ChainedPersistenceExceptionTranslator.java:58)
at org.springframework.dao.support.DataAccessUtils.translateIfNecessary(DataAccessUtils.java:213)
at org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:163)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at $Proxy36.getBankResultsForDate(Unknown Source)
at com.***.service.ScanResultDataServiceImpl.getBankResultsForDate(ScanResultDataServiceImpl.java:138)
at com.***.CalculateScore.main(CalculateScore.java:63)
Caused by: org.hibernate.exception.JDBCConnectionException: Cannot open connection
at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:99)
at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:66)
at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:52)
at org.hibernate.jdbc.ConnectionManager.openConnection(ConnectionManager.java:449)
at org.hibernate.jdbc.ConnectionManager.getConnection(ConnectionManager.java:167)
at org.hibernate.jdbc.AbstractBatcher.prepareQueryStatement(AbstractBatcher.java:161)
at org.hibernate.loader.Loader.prepareQueryStatement(Loader.java:1596)
at org.hibernate.loader.Loader.doQuery(Loader.java:717)
at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:270)
at org.hibernate.loader.Loader.loadCollection(Loader.java:2062)
at org.hibernate.loader.collection.CollectionLoader.initialize(CollectionLoader.java:62)
at org.hibernate.persister.collection.AbstractCollectionPersister.initialize(AbstractCollectionPersister.java:628)
at org.hibernate.event.def.DefaultInitializeCollectionEventListener.onInitializeCollection(DefaultInitializeCollectionEventListener.java:83)
at org.hibernate.impl.SessionImpl.initializeCollection(SessionImpl.java:1853)
at org.hibernate.collection.AbstractPersistentCollection.forceInitialization(AbstractPersistentCollection.java:476)
at org.hibernate.engine.StatefulPersistenceContext.initializeNonLazyCollections(StatefulPersistenceContext.java:899)
at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:275)
at org.hibernate.loader.Loader.doList(Loader.java:2294)
at org.hibernate.loader.Loader.listIgnoreQueryCache(Loader.java:2172)
at org.hibernate.loader.Loader.list(Loader.java:2167)
at org.hibernate.loader.hql.QueryLoader.list(QueryLoader.java:448)
at org.hibernate.hql.ast.QueryTranslatorImpl.list(QueryTranslatorImpl.java:363)
at org.hibernate.engine.query.HQLQueryPlan.performList(HQLQueryPlan.java:196)
at org.hibernate.impl.SessionImpl.list(SessionImpl.java:1258)
at org.hibernate.impl.QueryImpl.list(QueryImpl.java:102)
at org.hibernate.ejb.QueryImpl.getResultList(QueryImpl.java:241)
at sun.reflect.GeneratedMethodAccessor16.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:601)
at org.springframework.orm.jpa.SharedEntityManagerCreator$DeferredQueryInvocationHandler.invoke(SharedEntityManagerCreator.java:310)
at $Proxy34.getResultList(Unknown Source)
at org.springframework.data.jpa.repository.query.JpaQueryExecution$CollectionExecution.doExecute(JpaQueryExecution.java:77)
at org.springframework.data.jpa.repository.query.JpaQueryExecution.execute(JpaQueryExecution.java:54)
at org.springframework.data.jpa.repository.query.AbstractJpaQuery.doExecute(AbstractJpaQuery.java:93)
at org.springframework.data.jpa.repository.query.AbstractJpaQuery.execute(AbstractJpaQuery.java:83)
at org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.invoke(RepositoryFactorySupport.java:343)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:110)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:155)
... 5 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure
The last packet sent successfully to the server was 0 milliseconds ago. The driver has not received any packets from the server.
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:525)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1116)
at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:344)
at com.mysql.jdbc.ConnectionImpl.coreConnect(ConnectionImpl.java:2333)
at com.mysql.jdbc.ConnectionImpl.connectOneTryOnly(ConnectionImpl.java:2370)
at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2154)
at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:792)
at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:47)
at sun.reflect.GeneratedConstructorAccessor37.newInstance(Unknown Source)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:525)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:381)
at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:305)
at java.sql.DriverManager.getConnection(DriverManager.java:579)
at java.sql.DriverManager.getConnection(DriverManager.java:190)
at org.springframework.jdbc.datasource.DriverManagerDataSource.getConnectionFromDriverManager(DriverManagerDataSource.java:173)
at org.springframework.jdbc.datasource.DriverManagerDataSource.getConnectionFromDriver(DriverManagerDataSource.java:164)
at org.springframework.jdbc.datasource.AbstractDriverBasedDataSource.getConnectionFromDriver(AbstractDriverBasedDataSource.java:149)
at org.springframework.jdbc.datasource.AbstractDriverBasedDataSource.getConnection(AbstractDriverBasedDataSource.java:119)
at org.hibernate.ejb.connection.InjectedDataSourceConnectionProvider.getConnection(InjectedDataSourceConnectionProvider.java:71)
at org.hibernate.jdbc.ConnectionManager.openConnection(ConnectionManager.java:446)
... 41 more
Caused by: java.net.NoRouteToHostException: Die angeforderte Adresse kann nicht zugewiesen werden
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:339)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:200)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:182)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:391)
at java.net.Socket.connect(Socket.java:579)
at java.net.Socket.connect(Socket.java:528)
at java.net.Socket.<init>(Socket.java:425)
at java.net.Socket.<init>(Socket.java:241)
at com.mysql.jdbc.StandardSocketFactory.connect(StandardSocketFactory.java:257)
at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:294)
... 60 more
ERROR: com.***.CalculateScore - org.springframework.dao.DataAccessResourceFailureException: Cannot open connection; nested exception is org.hibernate.exception.JDBCConnectionException: Cannot open connection
My program is using Hibernate with MySQL in Java over JDBC.
The operation system is Ubuntu 12.04. A reinstallation of the system did't fix the problem.
Do someone have an idea what's going wrong?

This is due to NoRouteToHostException. That case for the network configuration state.
Signals that an error occurred while attempting to connect a socket to a remote address and port. Typically, the remote host cannot be reached because of an intervening firewall, or if an intermediate router is down.
Check How to avoid a NoRouteToHostException.